RLG00000015569

Aminotransferase class-V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002899
Physical Location & Seq
Forward (+)
67940496 .. 67941829
1334 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015569

Sequence Viewer

Length: 804 bp
ATGGTTGAATCAGACGCCGATCTTTCGCTGACCGAGGTAGGTTTCGGAAAGAACAGAGGTCGCCGGAGAGGGAAGACGAATGAAGAAATTGTAAGTGAATTTCGGATGGCTTTGGTGAAGGAAAAGGCTAGTGGTAGAAGAGTTAGATTAGCGATGATTGATCATGTTACATCCATGCCATATGTTGTACTTCCAGTTAAGAAATTGGTTAAAGTTTGCAGGGAAGAAGATGTTGATCAAGTTTTCATAGATGGGGCTCATGGTGTTGGGTGTGTAGATGTTGACATGCAAGAAATTGGAGCAGATTTTTACACTAGTAATTTGCACAAGTGGTTCTTCTCCCCTGCTTCGGTTGCATTTTTATATTGTAGGAAGTCAGTCACACATTTAGAATTGCATCATCCTATGGTGTCTCATGACTATGGTAAATGGTTTGAAGGCGGTATTGAGGGAATCAAAAGGAGGAATCATGATGCTGTTGTTGAGATGGGTAAGATGTTGGCAAAGGCTTGGGGAACCAATCTTGGGTCTTCGCCAGATATGTGTGCAAGCATGATCATGGTGGGAATACCGGCTTGTTTGGAGGTTTCAAGTGATGATGATGCTTTGAAGTTAAGGACACATTTAAGGGAGAAATTTGGTGTTGAAGTCCACATATATTACCAGATGCCAAAACATGAAGAGGTGGCAACAACAGTAGGGTATGGTCTAGTTTCTCATCAAGTCTACAACAAAGTTGATGACTATTATAAGTTTAGAGATGCAATTAATCAGCTTGTTTGTGATGGGTTCACCTGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 map00270
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

268

Amino Acids

30.1

Weight (kDa)

6.31

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 45 - 127 1.7e-10 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 750
AccI GTMKAC 1 cut(s) 726
AciI CCGC 1 cut(s) 441
AcsI RAATTY 2 cut(s) 98, 635
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 1 cut(s) 189
AfiI CCNNNNNNNGG 2 cut(s) 349, 525
AgsI TTSAA 5 cut(s) 8, 437, 591, 610, 647
AhlI ACTAGT 1 cut(s) 314
AluBI AGCT 1 cut(s) 775
AluI AGCT 1 cut(s) 775
Alw26I GTCTC 1 cut(s) 417
ApoI RAATTY 2 cut(s) 98, 635
AseI ATTAAT 1 cut(s) 768
AsuHPI GGTGA 2 cut(s) 127, 784
BanII GRGCYC 1 cut(s) 259
BbsI GAAGAC 2 cut(s) 80, 522
BccI CCATC 4 cut(s) 100, 245, 481, 779
BclI TGATCA 3 cut(s) 160, 235, 555
BcoDI GTCTC 1 cut(s) 417
BcuI ACTAGT 1 cut(s) 314
BfaI CTAG 3 cut(s) 129, 315, 710
BmiI GGNNCC 1 cut(s) 517
BmsI GCATC 5 cut(s) 406, 463, 592, 657, 751
BpiI GAAGAC 2 cut(s) 80, 522
BsaBI GATNNNNATC 1 cut(s) 234
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 33
Bsc4I CCNNNNNNNGG 2 cut(s) 349, 525
Bse118I RCCGGY 1 cut(s) 571
Bse1I ACTGG 1 cut(s) 194
Bse8I GATNNNNATC 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 3 cut(s) 111, 170, 400
BseJI GATNNNNATC 1 cut(s) 234
BseLI CCNNNNNNNGG 2 cut(s) 349, 525
BseNI ACTGG 1 cut(s) 194
BsiSI CCGG 2 cut(s) 64, 572
BslI CCNNNNNNNGG 2 cut(s) 349, 525
BsmAI GTCTC 1 cut(s) 417
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 4 cut(s) 19, 160, 235, 555
BspACI CCGC 1 cut(s) 441
BspHI TCATGA 2 cut(s) 415, 469
BspLI GGNNCC 1 cut(s) 517
BsrFI RCCGGY 1 cut(s) 571
BsrI ACTGG 1 cut(s) 194
BssAI RCCGGY 1 cut(s) 571
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 4 cut(s) 19, 160, 235, 555
BssNI GRCGYC 1 cut(s) 15
Bst4CI ACNGT 1 cut(s) 697
Bst6I CTCTTC 2 cut(s) 133, 675
BstACI GRCGYC 1 cut(s) 15
BstC8I GCNNGC 1 cut(s) 550
BstF5I GGATG 3 cut(s) 111, 170, 400
BstKTI GATC 4 cut(s) 22, 163, 238, 558
BstMAI GTCTC 1 cut(s) 417
BstMBI GATC 4 cut(s) 19, 160, 235, 555
BstMWI GCNNNNNNNGC 1 cut(s) 353
BstNSI RCATGY 1 cut(s) 289
BstV2I GAAGAC 2 cut(s) 80, 522
BtgZI GCGATG 1 cut(s) 167
BtsCI GGATG 3 cut(s) 111, 170, 400
Cac8I GCNNGC 1 cut(s) 550
CciI TCATGA 2 cut(s) 415, 469
Cfr10I RCCGGY 1 cut(s) 571
CseI GACGC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 188
CviAII CATG 9 cut(s) 164, 175, 260, 286, 416, 470, 553, 559, 677
CviJI RGCY 6 cut(s) 110, 128, 257, 509, 575, 775
CviKI_1 RGCY 6 cut(s) 110, 128, 257, 509, 575, 775
CviQI GTAC 1 cut(s) 188
DpnI GATC 4 cut(s) 21, 162, 237, 557
DpnII GATC 4 cut(s) 19, 160, 235, 555
Eam1104I CTCTTC 2 cut(s) 133, 675
EarI CTCTTC 2 cut(s) 133, 675
Eco24I GRGCYC 1 cut(s) 259
EcoT38I GRGCYC 1 cut(s) 259
FaeI CATG 9 cut(s) 167, 178, 263, 289, 419, 473, 556, 562, 680
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FatI CATG 9 cut(s) 163, 174, 259, 285, 415, 469, 552, 558, 676
FauNDI CATATG 1 cut(s) 181
FbaI TGATCA 3 cut(s) 160, 235, 555
FblI GTMKAC 1 cut(s) 726
FokI GGATG 3 cut(s) 118, 157, 387
FriOI GRGCYC 1 cut(s) 259
FspBI CTAG 3 cut(s) 129, 315, 710
HapII CCGG 2 cut(s) 64, 572
HgaI GACGC 1 cut(s) 23
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 9 cut(s) 167, 178, 263, 289, 419, 473, 556, 562, 680
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 3 cut(s) 8, 453, 466
HpaII CCGG 2 cut(s) 64, 572
HphI GGTGA 2 cut(s) 127, 784
Hpy166II GTNNAC 4 cut(s) 283, 652, 727, 792
Hpy188I TCNGA 3 cut(s) 13, 47, 105
Hpy188III TCNNGA 2 cut(s) 416, 470
Hpy8I GTNNAC 4 cut(s) 283, 652, 727, 792
HpyAV CCTTC 2 cut(s) 112, 431
HpyCH4III ACNGT 1 cut(s) 697
HpyCH4V TGCA 7 cut(s) 219, 289, 325, 356, 397, 548, 764
HpyF10VI GCNNNNNNNGC 1 cut(s) 353
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 9 cut(s) 167, 178, 263, 289, 419, 473, 556, 562, 680
Ksp22I TGATCA 3 cut(s) 160, 235, 555
Kzo9I GATC 4 cut(s) 19, 160, 235, 555
LmnI GCTCC 1 cut(s) 299
LpnPI CCDG 7 cut(s) 77, 205, 207, 357, 549, 585, 677
LweI GCATC 5 cut(s) 406, 463, 592, 657, 751
MaeI CTAG 3 cut(s) 129, 315, 710
MaeIII GTNAC 2 cut(s) 166, 379
MalI GATC 4 cut(s) 21, 162, 237, 557
MboI GATC 4 cut(s) 19, 160, 235, 555
MboII GAAGA 8 cut(s) 85, 95, 150, 236, 239, 328, 522, 692
MhlI GDGCHC 1 cut(s) 259
MluCI AATT 8 cut(s) 87, 98, 203, 294, 319, 392, 635, 765
MnlI CCTC 7 cut(s) 28, 50, 62, 442, 456, 577, 676
MseI TTAA 5 cut(s) 198, 210, 614, 626, 768
MslI CAYNNNNRTG 2 cut(s) 420, 557
MspI CCGG 2 cut(s) 64, 572
MwoI GCNNNNNNNGC 1 cut(s) 353
NdeI CATATG 1 cut(s) 181
NdeII GATC 4 cut(s) 19, 160, 235, 555
NlaIII CATG 9 cut(s) 167, 178, 263, 289, 419, 473, 556, 562, 680
NlaIV GGNNCC 1 cut(s) 517
NmuCI GTSAC 1 cut(s) 379
NspI RCATGY 1 cut(s) 289
PagI TCATGA 2 cut(s) 415, 469
PfeI GAWTC 3 cut(s) 8, 453, 466
PshBI ATTAAT 1 cut(s) 768
PsiI TTATAA 1 cut(s) 750
PspN4I GGNNCC 1 cut(s) 517
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
RseI CAYNNNNRTG 2 cut(s) 420, 557
SaqAI TTAA 5 cut(s) 198, 210, 614, 626, 768
Sau3AI GATC 4 cut(s) 19, 160, 235, 555
SduI GDGCHC 1 cut(s) 259
SetI ASST 7 cut(s) 39, 43, 61, 588, 687, 777, 797
SfaNI GCATC 5 cut(s) 406, 463, 592, 657, 751
SmiMI CAYNNNNRTG 2 cut(s) 420, 557
SpeI ACTAGT 1 cut(s) 314
Sse9I AATT 8 cut(s) 87, 98, 203, 294, 319, 392, 635, 765
SsiI CCGC 1 cut(s) 441
SspMI CTAG 3 cut(s) 129, 315, 710
TaaI ACNGT 1 cut(s) 697
TaqII GACCGA 1 cut(s) 47
TasI AATT 8 cut(s) 87, 98, 203, 294, 319, 392, 635, 765
TatI WGTACW 1 cut(s) 187
TfiI GAWTC 3 cut(s) 8, 453, 466
Tru1I TTAA 5 cut(s) 198, 210, 614, 626, 768
Tru9I TTAA 5 cut(s) 198, 210, 614, 626, 768
TseFI GTSAC 1 cut(s) 379
Tsp45I GTSAC 1 cut(s) 379
TspDTI ATGAA 3 cut(s) 96, 235, 693
VspI ATTAAT 1 cut(s) 768
XapI RAATTY 2 cut(s) 98, 635
XceI RCATGY 1 cut(s) 289
XmiI GTMKAC 1 cut(s) 726
XspI CTAG 3 cut(s) 129, 315, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.