RchiOBHm_Chr3g0458441

Aminotransferase class-V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002899
Physical Location & Seq
Reverse (-)
7139941 .. 7141074
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42511

Sequence Viewer

Length: 975 bp
ATGGCTTGCCGGATAATCATGTTCTACCGGTACTATGTTGCTCATCTACGACTTTGTCATCAGAATATCCAAATCTTGAAGCCCAAGCTTTCATTTCGAATTTCAAGGGCATCCTCTTACCATTATTACCACAACCTTAACCCTACTGATACCCAAACCAATTTCCCCATCAAGCCAAAACTTTCTTCCTTCATTACAGACTCTGAAATCGAAGCTGAATTTTCTCACCATGATCCGGGTGTTGCCCGGATAAACAATGGCAGCTTTGGTTGCTCCCCTGCTTTTGTTATCTCTGAATTGCAACAATGGCAACTCAAATGGCTGCGCCAGCCGGACCATTTCTTATTCAATGAGCTCCACAAGGGGATACTCAAATCAAGAAACACAGTTAAAGAACTTATCAATGCAGAGGATGTTGATGAAATTTCCATTGTAGATAATGCCACCACAGCAGTAGCCATAGTCTTGCAGCAGATGCAGTGGGCCTTCTTTGAAGGCAAATTCAAGAAAGGGGATGCTGTCATCATACTGCAGTGTGCTTATGGCGCGGTGAAGAACTCCATCAAGGCCTATTTTTTGCGTGCTGGCGGGTATGTTATTGAAGTTCCATTTCAATTTCCAGTGAATTCCAGTGAAGAAATTATAAGTGAATTTCGGATGGCTTTGGTGAAGGAAAAGGCTAGTGGTAGAAGAGTTAGATTAGCTATGATTGATCATGTTACATCCATGCCATCTGTTGTACTTCCAGTTAAGAAATTGGTTAAAGTTTGCAGGGAAGAAGGTGTTGATCAAGTTTTCATAGATGGGGCTCATGGTGTTGGGTGTGTAGATGTTGACATGCAAGAAATTGGAGCAGATTTTTACACTAGTAATTTGCACAAGTGGTTCTTCTGCCCTGCTTCGGTTGCATTTTTATATTGTAGGAAGTCAGTCACACATTTAGAATTGCATCATCCTATGTTGGATAGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 map00270
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

324

Amino Acids

37.03

Weight (kDa)

8.34

Isoelectric Point (pI)

39.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 99 - 311 4.7e-20 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 644
AccII CGCG 1 cut(s) 548
AciI CCGC 2 cut(s) 548, 588
AclWI GGATC 1 cut(s) 227
AcsI RAATTY 6 cut(s) 99, 218, 423, 500, 625, 650
AfaI GTAC 2 cut(s) 32, 741
AfiI CCNNNNNNNGG 2 cut(s) 235, 901
AgeI ACCGGT 1 cut(s) 27
AgsI TTSAA 7 cut(s) 79, 105, 349, 494, 505, 602, 614
AhlI ACTAGT 1 cut(s) 866
AjuI GAANNNNNNNTTGG 2 cut(s) 169, 201
AluBI AGCT 5 cut(s) 88, 215, 264, 355, 704
AluI AGCT 5 cut(s) 88, 215, 264, 355, 704
Alw21I GWGCWC 1 cut(s) 357
AlwI GGATC 1 cut(s) 227
AlwNI CAGNNNCTG 1 cut(s) 203
AoxI GGCC 2 cut(s) 483, 567
ApeKI GCWGC 3 cut(s) 261, 322, 469
ApoI RAATTY 6 cut(s) 99, 218, 423, 500, 625, 650
AsiGI ACCGGT 1 cut(s) 27
AspLEI GCGC 2 cut(s) 327, 548
AspS9I GGNCC 2 cut(s) 334, 483
AsuC2I CCSGG 2 cut(s) 237, 247
AsuHPI GGTGA 3 cut(s) 218, 562, 679
AsuII TTCGAA 1 cut(s) 97
AvaII GGWCC 1 cut(s) 334
BanII GRGCYC 2 cut(s) 357, 811
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 3 cut(s) 273, 309, 481
BccI CCATC 5 cut(s) 176, 569, 652, 739, 797
BciVI GTATCC 1 cut(s) 360
BclI TGATCA 2 cut(s) 712, 787
BcnI CCSGG 2 cut(s) 237, 247
BcuI ACTAGT 1 cut(s) 866
BfaI CTAG 3 cut(s) 681, 867, 973
BfmI CTRYAG 1 cut(s) 530
BfuI GTATCC 1 cut(s) 360
BisI GCNGC 3 cut(s) 262, 323, 470
BlsI GCNGC 3 cut(s) 263, 324, 471
Bme1390I CCNGG 2 cut(s) 237, 247
Bme18I GGWCC 1 cut(s) 334
BmgT120I GGNCC 2 cut(s) 334, 483
BmrFI CCNGG 2 cut(s) 237, 247
BmsI GCATC 4 cut(s) 119, 465, 505, 958
Bpu14I TTCGAA 1 cut(s) 97
BpuMI CCSGG 2 cut(s) 237, 247
BsaWI WCCGGW 1 cut(s) 27
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 901
Bse118I RCCGGY 1 cut(s) 27
Bse1I ACTGG 3 cut(s) 620, 630, 746
BseGI GGATG 6 cut(s) 110, 418, 520, 663, 722, 952
BseLI CCNNNNNNNGG 2 cut(s) 235, 901
BseNI ACTGG 3 cut(s) 620, 630, 746
BseXI GCAGC 3 cut(s) 273, 309, 481
Bsh1236I CGCG 1 cut(s) 548
BshFI GGCC 2 cut(s) 485, 569
BshTI ACCGGT 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 357
BsiSI CCGG 5 cut(s) 10, 28, 236, 247, 332
BslI CCNNNNNNNGG 2 cut(s) 235, 901
BsnI GGCC 2 cut(s) 485, 569
Bsp119I TTCGAA 1 cut(s) 97
Bsp1286I GDGCHC 2 cut(s) 357, 811
Bsp143I GATC 3 cut(s) 232, 712, 787
BspACI CCGC 2 cut(s) 548, 588
BspANI GGCC 2 cut(s) 485, 569
BspFNI CGCG 1 cut(s) 548
BspMAI CTGCAG 1 cut(s) 534
BspPI GGATC 1 cut(s) 227
BspT104I TTCGAA 1 cut(s) 97
BsrFI RCCGGY 1 cut(s) 27
BsrI ACTGG 3 cut(s) 620, 630, 746
BssAI RCCGGY 1 cut(s) 27
BssMI GATC 3 cut(s) 232, 712, 787
Bst4CI ACNGT 1 cut(s) 388
Bst6I CTCTTC 1 cut(s) 685
BstAPI GCANNNNNTGC 1 cut(s) 475
BstBI TTCGAA 1 cut(s) 97
BstC8I GCNNGC 4 cut(s) 7, 329, 582, 586
BstF5I GGATG 6 cut(s) 110, 418, 520, 663, 722, 952
BstFNI CGCG 1 cut(s) 548
BstHHI GCGC 2 cut(s) 327, 548
BstKTI GATC 3 cut(s) 235, 715, 790
BstMBI GATC 3 cut(s) 232, 712, 787
BstMWI GCNNNNNNNGC 7 cut(s) 270, 307, 328, 449, 475, 545, 905
BstNSI RCATGY 1 cut(s) 841
BstSCI CCNGG 2 cut(s) 235, 245
BstSFI CTRYAG 1 cut(s) 530
BstUI CGCG 1 cut(s) 548
BstV1I GCAGC 3 cut(s) 273, 309, 481
BsuI GTATCC 1 cut(s) 360
BsuRI GGCC 2 cut(s) 485, 569
BtsCI GGATG 6 cut(s) 110, 418, 520, 663, 722, 952
BtsI GCAGTG 2 cut(s) 485, 539
BtsIMutI CAGTG 4 cut(s) 485, 539, 627, 637
Cac8I GCNNGC 4 cut(s) 7, 329, 582, 586
CaiI CAGNNNCTG 1 cut(s) 203
CfoI GCGC 2 cut(s) 327, 548
Cfr10I RCCGGY 1 cut(s) 27
Cfr13I GGNCC 2 cut(s) 334, 483
Csp6I GTAC 2 cut(s) 31, 740
CspAI ACCGGT 1 cut(s) 27
CviAII CATG 6 cut(s) 19, 230, 716, 727, 812, 838
CviQI GTAC 2 cut(s) 31, 740
DpnI GATC 3 cut(s) 234, 714, 789
DpnII GATC 3 cut(s) 232, 712, 787
Eam1104I CTCTTC 1 cut(s) 685
EarI CTCTTC 1 cut(s) 685
Ecl136II GAGCTC 1 cut(s) 355
Eco147I AGGCCT 1 cut(s) 569
Eco24I GRGCYC 2 cut(s) 357, 811
Eco47I GGWCC 1 cut(s) 334
Eco53kI GAGCTC 1 cut(s) 355
EcoICRI GAGCTC 1 cut(s) 355
EcoRI GAATTC 1 cut(s) 625
EcoT38I GRGCYC 2 cut(s) 357, 811
FaeI CATG 6 cut(s) 22, 233, 719, 730, 815, 841
FalI AAGNNNNNCTT 2 cut(s) 872, 904
FatI CATG 6 cut(s) 18, 229, 715, 726, 811, 837
FauI CCCGC 1 cut(s) 581
FbaI TGATCA 2 cut(s) 712, 787
Fnu4HI GCNGC 3 cut(s) 262, 323, 470
FokI GGATG 6 cut(s) 97, 425, 527, 670, 709, 939
FriOI GRGCYC 2 cut(s) 357, 811
Fsp4HI GCNGC 3 cut(s) 262, 323, 470
FspBI CTAG 3 cut(s) 681, 867, 973
GlaI GCGC 2 cut(s) 326, 547
GluI GCNGC 3 cut(s) 262, 323, 470
HaeIII GGCC 2 cut(s) 485, 569
HapII CCGG 5 cut(s) 10, 28, 236, 247, 332
HhaI GCGC 2 cut(s) 327, 548
Hin1II CATG 6 cut(s) 22, 233, 719, 730, 815, 841
Hin6I GCGC 2 cut(s) 325, 546
HinP1I GCGC 2 cut(s) 325, 546
HincII GTYRAC 1 cut(s) 835
HindII GTYRAC 1 cut(s) 835
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 1 cut(s) 200
HpaII CCGG 5 cut(s) 10, 28, 236, 247, 332
HphI GGTGA 3 cut(s) 218, 562, 679
Hpy166II GTNNAC 1 cut(s) 835
Hpy188I TCNGA 4 cut(s) 63, 205, 295, 657
Hpy188III TCNNGA 3 cut(s) 76, 378, 505
Hpy8I GTNNAC 1 cut(s) 835
HpyAV CCTTC 5 cut(s) 199, 488, 496, 664, 773
HpyCH4III ACNGT 1 cut(s) 388
HpyF10VI GCNNNNNNNGC 7 cut(s) 270, 307, 328, 449, 475, 545, 905
Hsp92II CATG 6 cut(s) 22, 233, 719, 730, 815, 841
HspAI GCGC 2 cut(s) 325, 546
Ksp22I TGATCA 2 cut(s) 712, 787
Kzo9I GATC 3 cut(s) 232, 712, 787
LmnI GCTCC 3 cut(s) 278, 360, 851
Lsp1109I GCAGC 3 cut(s) 273, 309, 481
LweI GCATC 4 cut(s) 119, 465, 505, 958
MaeI CTAG 3 cut(s) 681, 867, 973
MaeIII GTNAC 2 cut(s) 718, 931
MalI GATC 3 cut(s) 234, 714, 789
MboI GATC 3 cut(s) 232, 712, 787
MboII GAAGA 6 cut(s) 177, 565, 647, 702, 788, 880
MhlI GDGCHC 2 cut(s) 357, 811
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 1 cut(s) 942
MnlI CCTC 2 cut(s) 124, 403
MseI TTAA 4 cut(s) 138, 390, 750, 762
MspI CCGG 5 cut(s) 10, 28, 236, 247, 332
MspR9I CCNGG 2 cut(s) 237, 247
MvnI CGCG 1 cut(s) 548
MwoI GCNNNNNNNGC 7 cut(s) 270, 307, 328, 449, 475, 545, 905
NciI CCSGG 2 cut(s) 237, 247
NdeII GATC 3 cut(s) 232, 712, 787
NlaIII CATG 6 cut(s) 22, 233, 719, 730, 815, 841
NmuCI GTSAC 1 cut(s) 931
NspI RCATGY 1 cut(s) 841
NspV TTCGAA 1 cut(s) 97
PceI AGGCCT 1 cut(s) 569
PflFI GACNNNGTC 1 cut(s) 54
PinAI ACCGGT 1 cut(s) 27
PkrI GCNGC 3 cut(s) 263, 324, 471
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
PsiI TTATAA 1 cut(s) 644
Psp124BI GAGCTC 1 cut(s) 357
PspPI GGNCC 2 cut(s) 334, 483
PstI CTGCAG 1 cut(s) 534
PstNI CAGNNNCTG 1 cut(s) 203
PsyI GACNNNGTC 1 cut(s) 54
RsaI GTAC 2 cut(s) 32, 741
RsaNI GTAC 2 cut(s) 31, 740
SacI GAGCTC 1 cut(s) 357
SaqAI TTAA 4 cut(s) 138, 390, 750, 762
SatI GCNGC 3 cut(s) 262, 323, 470
Sau3AI GATC 3 cut(s) 232, 712, 787
Sau96I GGNCC 2 cut(s) 334, 483
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 2 cut(s) 237, 247
SduI GDGCHC 2 cut(s) 357, 811
SetI ASST 7 cut(s) 90, 138, 217, 266, 357, 706, 784
SfaNI GCATC 4 cut(s) 119, 465, 505, 958
SfcI CTRYAG 1 cut(s) 530
SfuI TTCGAA 1 cut(s) 97
SinI GGWCC 1 cut(s) 334
SpeI ACTAGT 1 cut(s) 866
SseBI AGGCCT 1 cut(s) 569
SsiI CCGC 2 cut(s) 548, 588
SspMI CTAG 3 cut(s) 681, 867, 973
SstI GAGCTC 1 cut(s) 357
StuI AGGCCT 1 cut(s) 569
StyD4I CCNGG 2 cut(s) 235, 245
TaaI ACNGT 1 cut(s) 388
TaqI TCGA 2 cut(s) 97, 210
TatI WGTACW 1 cut(s) 739
Tru1I TTAA 4 cut(s) 138, 390, 750, 762
Tru9I TTAA 4 cut(s) 138, 390, 750, 762
TscAI CASTG 4 cut(s) 485, 539, 627, 637
TseFI GTSAC 1 cut(s) 931
TseI GCWGC 3 cut(s) 261, 322, 469
Tsp45I GTSAC 1 cut(s) 931
TspDTI ATGAA 4 cut(s) 81, 181, 435, 787
TspRI CASTG 4 cut(s) 485, 539, 627, 637
Tth111I GACNNNGTC 1 cut(s) 54
VpaK11BI GGWCC 1 cut(s) 334
XapI RAATTY 6 cut(s) 99, 218, 423, 500, 625, 650
XceI RCATGY 1 cut(s) 841
XspI CTAG 3 cut(s) 681, 867, 973
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.