Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002899

Physical Location & Seq

Genomic Coordinates Reverse (-)

5087516 .. 5088462

Gene Structure 947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g08590.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAAAGGGGATGTTGTCATCACACTGCAGTCTGCTTATGGCGCGGTGAAGAACTCCATTAAGGCCTATTTTGAGCGAGCTGGCGGGTATGTTATTGAAGTTCCATTTCAATTTCCAGTGAATTCCAGTGAAGAAATAGTAAATGAATTTCAGATGGCTTTGGTGAAGGAAAAGGCTAGTGGTAGAAGAGTTAGATTAGCTCTGATTGATCATGTTACATCCATGCCATCTGTTTTACTTCCAGTTAAGAAATTGGTTGAAGTGTGCAGGGAAGAAGCTGTGGAGTTCACAAACAGATTTGAAGGCGGTATCGATGGAATCAAAAGGAGGAATCATGATGCTGTTGTTGAGAAGGGAAAGATGTTGGCAAAGGCTTGGGGAACCAATCTTGGATCTCCACCGGATATGTGTGCAAGCATGATCATGGTGGGAATGCCGGCTTGTTTGGGGGTTCCAAGTGATGATGATGCCTTGAAATTAAGGATACATCTGAGGGAGAAATTTGGTGTTGAAGTACCAATATATTACCGAATGCCGAAGCATGAAGAGGTTGCAAAAACAACAACTGCGTATGCTCGAGTTTCTCATCAAGTCTACAACAAAGTTGATGACTATTATAAGTTCAGAGATGCAATCAATCAACTTGTTTGTGATGGGTTCACCTGTGCTCGATCTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

227

Amino Acids

25.3

Weight (kDa)

8.51

Isoelectric Point (pI)

49.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62130 AT3G62130
fragaria_vesca	FvH4_4g04240 FvH4_6g08442 FvH4_6g08442 FvH4_6g08590 FvH4_6g34050 FvH4_7g09780
malus_domestica	MD12G1200200.v1.1
prunus_persica	Prupe.6G305000_v2.0.a1 Prupe.6G305100_v2.0.a1 Prupe.6G305200_v2.0.a1 Prupe.6G305300_v2.0.a1 Prupe.6G305300_v2.0.a1
pyrus_communis	pycom12g18680
rosa_chinensis	RchiOBHm_Chr2g0123491 RchiOBHm_Chr2g0123501 RchiOBHm_Chr2g0123511 RchiOBHm_Chr3g0458441
rosa_laevigata	RLG00000015569 RLG00000015570 RLG00000025157
rosa_multiflora	Rmu_sc0013809.1_g000004 Rmu_sc0017098.1_g000006 Rmu_sc0017098.1_g000007 Rmu_ssc0000091.1_g000003
rosa_rugosa	Rorug03G0028400 Rorug03G0028700
rosa_samantha	Rh2AG304800 Rh2BG312900 Rh2BG313000 Rh2CG291300 Rh2DG328800 Rh3BG090600 Rh3DG091400
rosa_wichuraiana	Rw0G018550 Rw2G024430 Rw3G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	618
AccI	GTMKAC	1 cut(s)	594
AccII	CGCG	1 cut(s)	44
AciI	CCGC	3 cut(s)	44, 84, 306
AclWI	GGATC	1 cut(s)	400
AcsI	RAATTY	3 cut(s)	121, 146, 500
AfaI	GTAC	1 cut(s)	516
AgsI	TTSAA	6 cut(s)	98, 110, 260, 302, 475, 512
AluBI	AGCT	3 cut(s)	80, 200, 278
AluI	AGCT	3 cut(s)	80, 200, 278
Alw21I	GWGCWC	1 cut(s)	670
AlwI	GGATC	1 cut(s)	400
Ama87I	CYCGRG	1 cut(s)	576
AoxI	GGCC	1 cut(s)	63
ApoI	RAATTY	3 cut(s)	121, 146, 500
AspLEI	GCGC	1 cut(s)	44
AsuHPI	GGTGA	3 cut(s)	58, 175, 652
AvaI	CYCGRG	1 cut(s)	576
Bbv12I	GWGCWC	1 cut(s)	670
BccI	CCATC	4 cut(s)	148, 235, 308, 647
BciVI	GTATCC	1 cut(s)	477
BclI	TGATCA	2 cut(s)	208, 420
BfaI	CTAG	1 cut(s)	177
BfmI	CTRYAG	1 cut(s)	26
BfuI	GTATCC	1 cut(s)	477
BmeT110I	CYCGRG	1 cut(s)	576
BmiI	GGNNCC	2 cut(s)	382, 453
BmsI	GCATC	3 cut(s)	328, 457, 619
Bsa29I	ATCGAT	1 cut(s)	312
BsaWI	WCCGGW	1 cut(s)	400
Bse118I	RCCGGY	1 cut(s)	436
Bse1I	ACTGG	3 cut(s)	116, 126, 242
BseCI	ATCGAT	1 cut(s)	312
BseGI	GGATG	2 cut(s)	16, 218
BseMII	CTCAG	1 cut(s)	482
BseNI	ACTGG	3 cut(s)	116, 126, 242
BsgI	GTGCAG	1 cut(s)	286
Bsh1236I	CGCG	1 cut(s)	44
BshFI	GGCC	1 cut(s)	65
BshVI	ATCGAT	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	670
BsiHKCI	CYCGRG	1 cut(s)	576
BsiSI	CCGG	2 cut(s)	401, 437
BsmI	GAATGC	2 cut(s)	438, 537
BsnI	GGCC	1 cut(s)	65
BsoBI	CYCGRG	1 cut(s)	576
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp143I	GATC	4 cut(s)	208, 392, 420, 671
BspACI	CCGC	3 cut(s)	44, 84, 306
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	1 cut(s)	483
BspDI	ATCGAT	1 cut(s)	312
BspFNI	CGCG	1 cut(s)	44
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	2 cut(s)	382, 453
BspMAI	CTGCAG	1 cut(s)	30
BspPI	GGATC	1 cut(s)	400
BsrFI	RCCGGY	1 cut(s)	436
BsrI	ACTGG	3 cut(s)	116, 126, 242
BssAI	RCCGGY	1 cut(s)	436
BssMI	GATC	4 cut(s)	208, 392, 420, 671
Bst6I	CTCTTC	2 cut(s)	181, 540
BstC8I	GCNNGC	4 cut(s)	78, 82, 415, 438
BstDEI	CTNAG	1 cut(s)	491
BstF5I	GGATG	2 cut(s)	16, 218
BstFNI	CGCG	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	4 cut(s)	211, 395, 423, 674
BstMBI	GATC	4 cut(s)	208, 392, 420, 671
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstSFI	CTRYAG	1 cut(s)	26
BstUI	CGCG	1 cut(s)	44
BstX2I	RGATCY	1 cut(s)	392
BstYI	RGATCY	1 cut(s)	392
Bsu15I	ATCGAT	1 cut(s)	312
BsuI	GTATCC	1 cut(s)	477
BsuRI	GGCC	1 cut(s)	65
BsuTUI	ATCGAT	1 cut(s)	312
BtsCI	GGATG	2 cut(s)	16, 218
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	3 cut(s)	23, 123, 133
Cac8I	GCNNGC	4 cut(s)	78, 82, 415, 438
CciI	TCATGA	1 cut(s)	334
CfoI	GCGC	1 cut(s)	44
Cfr10I	RCCGGY	1 cut(s)	436
ClaI	ATCGAT	1 cut(s)	312
Csp6I	GTAC	1 cut(s)	515
CviAII	CATG	6 cut(s)	212, 223, 335, 418, 424, 542
CviJI	RGCY	8 cut(s)	65, 80, 158, 176, 200, 278, 374, 440
CviKI_1	RGCY	8 cut(s)	65, 80, 158, 176, 200, 278, 374, 440
CviQI	GTAC	1 cut(s)	515
DdeI	CTNAG	1 cut(s)	491
DpnI	GATC	4 cut(s)	210, 394, 422, 673
DpnII	GATC	4 cut(s)	208, 392, 420, 671
Eam1104I	CTCTTC	2 cut(s)	181, 540
EarI	CTCTTC	2 cut(s)	181, 540
Eco147I	AGGCCT	1 cut(s)	65
Eco88I	CYCGRG	1 cut(s)	576
EcoRI	GAATTC	1 cut(s)	121
FaeI	CATG	6 cut(s)	215, 226, 338, 421, 427, 545
FatI	CATG	6 cut(s)	211, 222, 334, 417, 423, 541
FauI	CCCGC	1 cut(s)	77
FbaI	TGATCA	2 cut(s)	208, 420
FblI	GTMKAC	1 cut(s)	594
FokI	GGATG	2 cut(s)	23, 205
FspBI	CTAG	1 cut(s)	177
GlaI	GCGC	1 cut(s)	43
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	2 cut(s)	401, 437
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	6 cut(s)	215, 226, 338, 421, 427, 545
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HinfI	GANTC	2 cut(s)	318, 331
HpaII	CCGG	2 cut(s)	401, 437
HphI	GGTGA	3 cut(s)	58, 175, 652
Hpy166II	GTNNAC	3 cut(s)	288, 595, 660
Hpy188I	TCNGA	4 cut(s)	153, 204, 492, 626
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	3 cut(s)	288, 595, 660
HpyAV	CCTTC	3 cut(s)	160, 296, 346
HpyCH4V	TGCA	5 cut(s)	28, 267, 413, 554, 632
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	1 cut(s)	491
Hsp92II	CATG	6 cut(s)	215, 226, 338, 421, 427, 545
HspAI	GCGC	1 cut(s)	42
KroI	GCCGGC	1 cut(s)	436
KroNI	GCCGGC	1 cut(s)	438
Ksp22I	TGATCA	2 cut(s)	208, 420
Kzo9I	GATC	4 cut(s)	208, 392, 420, 671
LpnPI	CCDG	8 cut(s)	66, 129, 139, 253, 255, 414, 450, 676
LweI	GCATC	3 cut(s)	328, 457, 619
MaeI	CTAG	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	4 cut(s)	210, 394, 422, 673
MboI	GATC	4 cut(s)	208, 392, 420, 671
MboII	GAAGA	5 cut(s)	61, 143, 198, 284, 557
MflI	RGATCY	1 cut(s)	392
MhlI	GDGCHC	1 cut(s)	670
MluCI	AATT	6 cut(s)	110, 121, 146, 251, 476, 500
MnlI	CCTC	3 cut(s)	321, 486, 541
MroNI	GCCGGC	1 cut(s)	436
MseI	TTAA	3 cut(s)	60, 246, 479
MslI	CAYNNNNRTG	1 cut(s)	422
MspI	CCGG	2 cut(s)	401, 437
Mva1269I	GAATGC	2 cut(s)	438, 537
MvnI	CGCG	1 cut(s)	44
MwoI	GCNNNNNNNGC	1 cut(s)	41
NaeI	GCCGGC	1 cut(s)	438
NdeII	GATC	4 cut(s)	208, 392, 420, 671
NgoMIV	GCCGGC	1 cut(s)	436
NlaIII	CATG	6 cut(s)	215, 226, 338, 421, 427, 545
NlaIV	GGNNCC	2 cut(s)	382, 453
PaeR7I	CTCGAG	1 cut(s)	576
PagI	TCATGA	1 cut(s)	334
PceI	AGGCCT	1 cut(s)	65
PctI	GAATGC	2 cut(s)	438, 537
PdiI	GCCGGC	1 cut(s)	438
PfeI	GAWTC	2 cut(s)	318, 331
PsiI	TTATAA	1 cut(s)	618
PspN4I	GGNNCC	2 cut(s)	382, 453
PspXI	VCTCGAGB	1 cut(s)	576
PstI	CTGCAG	1 cut(s)	30
PsuI	RGATCY	1 cut(s)	392
RsaI	GTAC	1 cut(s)	516
RsaNI	GTAC	1 cut(s)	515
RseI	CAYNNNNRTG	1 cut(s)	422
SaqAI	TTAA	3 cut(s)	60, 246, 479
Sau3AI	GATC	4 cut(s)	208, 392, 420, 671
SduI	GDGCHC	1 cut(s)	670
SetI	ASST	5 cut(s)	82, 202, 280, 552, 665
SfaNI	GCATC	3 cut(s)	328, 457, 619
SfcI	CTRYAG	1 cut(s)	26
Sfr274I	CTCGAG	1 cut(s)	576
SlaI	CTCGAG	1 cut(s)	576
SmiMI	CAYNNNNRTG	1 cut(s)	422
SmlI	CTYRAG	1 cut(s)	576
SmoI	CTYRAG	1 cut(s)	576
Sse9I	AATT	6 cut(s)	110, 121, 146, 251, 476, 500
SseBI	AGGCCT	1 cut(s)	65
SsiI	CCGC	3 cut(s)	44, 84, 306
SspMI	CTAG	1 cut(s)	177
StuI	AGGCCT	1 cut(s)	65
TaqI	TCGA	3 cut(s)	312, 577, 670
TasI	AATT	6 cut(s)	110, 121, 146, 251, 476, 500
TfiI	GAWTC	2 cut(s)	318, 331
Tru1I	TTAA	3 cut(s)	60, 246, 479
Tru9I	TTAA	3 cut(s)	60, 246, 479
TscAI	CASTG	3 cut(s)	30, 123, 133
TspDTI	ATGAA	3 cut(s)	17, 159, 558
TspRI	CASTG	3 cut(s)	30, 123, 133
XapI	RAATTY	3 cut(s)	121, 146, 500
XhoI	CTCGAG	1 cut(s)	576
XmiI	GTMKAC	1 cut(s)	594
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.