Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002899

Physical Location & Seq

Genomic Coordinates Forward (+)

26921868 .. 26923068

Gene Structure 1201 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g34050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGTCTGTGGCTTTGGGCGTGACGAGCTCCAGTGAAAGAGAATCGAAGCTCGAATGTTTCTCGGCATCTCCGGAAAATTTTTCGACTCCGGCCACGGCTGCAATCGAGACCGATGGCGGGGATGCTGTCATCACACTGCAGTGTGCTTATGGCGCGGTGAAGAACTCCATTAAGGCCTATTTTGAGCGAGCTGGCGAGTATGTTATTGAAGTTCCATTTCAATTTCCAGTGAATTCCAGTGAAGAAATAGTAAATGAATTTCAGATGGCTTTGGTGAAGGAAAAGGCTAGTGGTAGAAGAGTTAGATTAGCTCTGATTGATCATGTTACATCCATGCCATCTGTTTTACTTCCAGTTAAGAAATTGGTTGAAGTGTGCAGGGAAGAAGGTGTTGATCAAGTTTTCATAGATGGGGCTCATGGTGTTGGGTGTGTAGATGTTGATATGCAAGAAATAGGAGCAGATTTTTACGCTAGTAATTTGCACAAGTGGTTCGTCTGCCCTGCTTCGGTTGCATTTCTGTATTGTAGGAAGTTAGTCACACATTCAGAACTGCATCATCCTATGGTGTCTCATGATTATGGTAAAGGGTTGGCTATTGAAAGCTGCTGGATAGGGACTAGGGATTATAGTCCTTTAGTAGTTCCTTCAGCTGTGGAGTTCACAAACAGATTTGAAGGCGGTATCAATGGAATCAAAAGGAGGAATCATGATGTTGTTGTTGAGAAGGGAAAGATGTTGGCAAAGGCTTGGGGAACCAATCTTGGGTCTCCACCGGATATGTGTGCAAGCATGATCATGGTGGGAATGCCGGCTTGTTTGGGGGTTTCAAGTGATGATGATGCCTTGAAATTAAGGACACATCTGAGGGAGAAATTTGGTGTTGAAGTACCAATATATTACCGAATGCCGAAGCATGAAGAGGTTGCAAAAACAACAACTGCGTATGCTCGAGTTTCTCATCAAGTCTACAACAAAGTTGATGACTATTATAAGTTCAGAGATGCAATCAATCAACTTGTTTGTGATGGGTTCACCTGTGCTCGATCTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

352

Amino Acids

38.77

Weight (kDa)

5.91

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	96 - 179	2e-10	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62130 AT3G62130
fragaria_vesca	FvH4_4g04240 FvH4_6g08442 FvH4_6g08442 FvH4_6g08590 FvH4_6g34050 FvH4_7g09780
malus_domestica	MD12G1200200.v1.1
prunus_persica	Prupe.6G305000_v2.0.a1 Prupe.6G305100_v2.0.a1 Prupe.6G305200_v2.0.a1 Prupe.6G305300_v2.0.a1 Prupe.6G305300_v2.0.a1
pyrus_communis	pycom12g18680
rosa_chinensis	RchiOBHm_Chr2g0123491 RchiOBHm_Chr2g0123501 RchiOBHm_Chr2g0123511 RchiOBHm_Chr3g0458441
rosa_laevigata	RLG00000015569 RLG00000015570 RLG00000025157
rosa_multiflora	Rmu_sc0013809.1_g000004 Rmu_sc0017098.1_g000006 Rmu_sc0017098.1_g000007 Rmu_ssc0000091.1_g000003
rosa_rugosa	Rorug03G0028400 Rorug03G0028700
rosa_samantha	Rh2AG304800 Rh2BG312900 Rh2BG313000 Rh2CG291300 Rh2DG328800 Rh3BG090600 Rh3DG091400
rosa_wichuraiana	Rw0G018550 Rw2G024430 Rw3G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	993
AccI	GTMKAC	1 cut(s)	969
AccII	CGCG	1 cut(s)	155
AccIII	TCCGGA	1 cut(s)	70
AciI	CCGC	3 cut(s)	117, 155, 681
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	4 cut(s)	76, 232, 257, 875
AcuI	CTGAAG	1 cut(s)	633
AfaI	GTAC	1 cut(s)	891
AfiI	CCNNNNNNNGG	3 cut(s)	117, 508, 765
AgsI	TTSAA	8 cut(s)	209, 221, 371, 602, 677, 831, 850, 887
AleI	CACNNNNGTG	1 cut(s)	139
AluBI	AGCT	6 cut(s)	27, 49, 191, 311, 606, 653
AluI	AGCT	6 cut(s)	27, 49, 191, 311, 606, 653
Alw21I	GWGCWC	2 cut(s)	29, 1045
Alw26I	GTCTC	3 cut(s)	101, 576, 774
Ama87I	CYCGRG	1 cut(s)	951
Aor13HI	TCCGGA	1 cut(s)	70
AoxI	GGCC	2 cut(s)	90, 174
ApeKI	GCWGC	2 cut(s)	98, 606
ApoI	RAATTY	4 cut(s)	76, 232, 257, 875
AspLEI	GCGC	1 cut(s)	155
AsuHPI	GGTGA	3 cut(s)	169, 286, 1027
AvaI	CYCGRG	1 cut(s)	951
BanII	GRGCYC	2 cut(s)	29, 418
Bbv12I	GWGCWC	2 cut(s)	29, 1045
BbvI	GCAGC	2 cut(s)	85, 593
BccI	CCATC	5 cut(s)	107, 259, 346, 404, 1022
BceAI	ACGGC	1 cut(s)	111
BclI	TGATCA	3 cut(s)	319, 394, 795
BcoDI	GTCTC	3 cut(s)	101, 576, 774
BfaI	CTAG	3 cut(s)	288, 474, 621
BfmI	CTRYAG	1 cut(s)	137
BisI	GCNGC	2 cut(s)	99, 607
BlsI	GCNGC	2 cut(s)	100, 608
BmeT110I	CYCGRG	1 cut(s)	951
BmiI	GGNNCC	1 cut(s)	757
BmsI	GCATC	5 cut(s)	74, 112, 565, 832, 994
BpmI	CTGGAG	1 cut(s)	13
BsaI	GGTCTC	2 cut(s)	101, 774
BsaJI	CCNNGG	1 cut(s)	93
BsaWI	WCCGGW	2 cut(s)	70, 775
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 508, 765
Bse118I	RCCGGY	1 cut(s)	811
Bse1I	ACTGG	4 cut(s)	30, 227, 237, 353
BseAI	TCCGGA	1 cut(s)	70
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	3 cut(s)	127, 329, 559
BseLI	CCNNNNNNNGG	3 cut(s)	117, 508, 765
BseMII	CTCAG	1 cut(s)	857
BseNI	ACTGG	4 cut(s)	30, 227, 237, 353
BseXI	GCAGC	2 cut(s)	85, 593
BsgI	GTGCAG	1 cut(s)	397
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	2 cut(s)	92, 176
BsiHKAI	GWGCWC	2 cut(s)	29, 1045
BsiHKCI	CYCGRG	1 cut(s)	951
BsiSI	CCGG	4 cut(s)	71, 89, 776, 812
BslFI	GGGAC	1 cut(s)	631
BslI	CCNNNNNNNGG	3 cut(s)	117, 508, 765
BsmAI	GTCTC	3 cut(s)	101, 576, 774
BsmFI	GGGAC	1 cut(s)	631
BsmI	GAATGC	2 cut(s)	813, 912
BsnI	GGCC	2 cut(s)	92, 176
Bso31I	GGTCTC	2 cut(s)	101, 774
BsoBI	CYCGRG	1 cut(s)	951
Bsp1286I	GDGCHC	3 cut(s)	29, 418, 1045
Bsp13I	TCCGGA	1 cut(s)	70
Bsp143I	GATC	4 cut(s)	319, 394, 795, 1046
BspACI	CCGC	3 cut(s)	117, 155, 681
BspANI	GGCC	2 cut(s)	92, 176
BspCNI	CTCAG	1 cut(s)	858
BspEI	TCCGGA	1 cut(s)	70
BspFNI	CGCG	1 cut(s)	155
BspHI	TCATGA	2 cut(s)	574, 709
BspLI	GGNNCC	1 cut(s)	757
BspMAI	CTGCAG	1 cut(s)	141
BspTNI	GGTCTC	2 cut(s)	101, 774
BsrFI	RCCGGY	1 cut(s)	811
BsrI	ACTGG	4 cut(s)	30, 227, 237, 353
BssAI	RCCGGY	1 cut(s)	811
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	4 cut(s)	319, 394, 795, 1046
Bst6I	CTCTTC	2 cut(s)	292, 915
BstC8I	GCNNGC	4 cut(s)	189, 193, 790, 813
BstDEI	CTNAG	1 cut(s)	866
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	3 cut(s)	127, 329, 559
BstFNI	CGCG	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	4 cut(s)	322, 397, 798, 1049
BstMAI	GTCTC	3 cut(s)	101, 576, 774
BstMBI	GATC	4 cut(s)	319, 394, 795, 1046
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 98, 152, 512
BstSFI	CTRYAG	1 cut(s)	137
BstUI	CGCG	1 cut(s)	155
BstV1I	GCAGC	2 cut(s)	85, 593
BsuRI	GGCC	2 cut(s)	92, 176
BtgI	CCRYGG	1 cut(s)	93
BtsCI	GGATG	3 cut(s)	127, 329, 559
BtsI	GCAGTG	2 cut(s)	134, 146
BtsIMutI	CAGTG	5 cut(s)	37, 134, 146, 234, 244
Cac8I	GCNNGC	4 cut(s)	189, 193, 790, 813
CciI	TCATGA	2 cut(s)	574, 709
CfoI	GCGC	1 cut(s)	155
Cfr10I	RCCGGY	1 cut(s)	811
Csp6I	GTAC	1 cut(s)	890
CviAII	CATG	8 cut(s)	323, 334, 419, 575, 710, 793, 799, 917
CviQI	GTAC	1 cut(s)	890
DdeI	CTNAG	1 cut(s)	866
DpnI	GATC	4 cut(s)	321, 396, 797, 1048
DpnII	GATC	4 cut(s)	319, 394, 795, 1046
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	2 cut(s)	292, 915
EarI	CTCTTC	2 cut(s)	292, 915
Ecl136II	GAGCTC	1 cut(s)	27
Eco147I	AGGCCT	1 cut(s)	176
Eco24I	GRGCYC	2 cut(s)	29, 418
Eco31I	GGTCTC	2 cut(s)	101, 774
Eco53kI	GAGCTC	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	633
Eco88I	CYCGRG	1 cut(s)	951
EcoICRI	GAGCTC	1 cut(s)	27
EcoRI	GAATTC	1 cut(s)	232
EcoT38I	GRGCYC	2 cut(s)	29, 418
FaeI	CATG	8 cut(s)	326, 337, 422, 578, 713, 796, 802, 920
FaqI	GGGAC	1 cut(s)	631
FatI	CATG	8 cut(s)	322, 333, 418, 574, 709, 792, 798, 916
FauI	CCCGC	1 cut(s)	110
FbaI	TGATCA	3 cut(s)	319, 394, 795
FblI	GTMKAC	1 cut(s)	969
Fnu4HI	GCNGC	2 cut(s)	99, 607
FokI	GGATG	3 cut(s)	134, 316, 546
FriOI	GRGCYC	2 cut(s)	29, 418
Fsp4HI	GCNGC	2 cut(s)	99, 607
FspBI	CTAG	3 cut(s)	288, 474, 621
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	2 cut(s)	99, 607
GsuI	CTGGAG	1 cut(s)	13
HaeIII	GGCC	2 cut(s)	92, 176
HapII	CCGG	4 cut(s)	71, 89, 776, 812
HhaI	GCGC	1 cut(s)	155
Hin1II	CATG	8 cut(s)	326, 337, 422, 578, 713, 796, 802, 920
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HinfI	GANTC	4 cut(s)	41, 85, 693, 706
HpaII	CCGG	4 cut(s)	71, 89, 776, 812
HphI	GGTGA	3 cut(s)	169, 286, 1027
Hpy166II	GTNNAC	3 cut(s)	663, 970, 1035
Hpy188I	TCNGA	5 cut(s)	264, 315, 550, 867, 1001
Hpy188III	TCNNGA	4 cut(s)	71, 106, 575, 710
Hpy8I	GTNNAC	3 cut(s)	663, 970, 1035
HpyAV	CCTTC	5 cut(s)	271, 380, 657, 671, 721
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 98, 152, 512
HpyF3I	CTNAG	1 cut(s)	866
Hsp92II	CATG	8 cut(s)	326, 337, 422, 578, 713, 796, 802, 920
HspAI	GCGC	1 cut(s)	153
Kpn2I	TCCGGA	1 cut(s)	70
KroI	GCCGGC	1 cut(s)	811
KroNI	GCCGGC	1 cut(s)	813
Ksp22I	TGATCA	3 cut(s)	319, 394, 795
Kzo9I	GATC	4 cut(s)	319, 394, 795, 1046
LmnI	GCTCC	2 cut(s)	32, 458
Lsp1109I	GCAGC	2 cut(s)	85, 593
LweI	GCATC	5 cut(s)	74, 112, 565, 832, 994
MaeI	CTAG	3 cut(s)	288, 474, 621
MaeIII	GTNAC	3 cut(s)	19, 325, 538
MalI	GATC	4 cut(s)	321, 396, 797, 1048
MboI	GATC	4 cut(s)	319, 394, 795, 1046
MboII	GAAGA	5 cut(s)	172, 254, 309, 395, 932
MhlI	GDGCHC	3 cut(s)	29, 418, 1045
MluCI	AATT	8 cut(s)	76, 221, 232, 257, 362, 478, 851, 875
MlyI	GAGTC	1 cut(s)	79
MnlI	CCTC	3 cut(s)	696, 861, 916
MroI	TCCGGA	1 cut(s)	70
MroNI	GCCGGC	1 cut(s)	811
MseI	TTAA	3 cut(s)	171, 357, 854
MslI	CAYNNNNRTG	3 cut(s)	139, 579, 797
MspA1I	CMGCKG	1 cut(s)	653
MspI	CCGG	4 cut(s)	71, 89, 776, 812
Mva1269I	GAATGC	2 cut(s)	813, 912
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	4 cut(s)	24, 98, 152, 512
NaeI	GCCGGC	1 cut(s)	813
NdeII	GATC	4 cut(s)	319, 394, 795, 1046
NgoMIV	GCCGGC	1 cut(s)	811
NlaIII	CATG	8 cut(s)	326, 337, 422, 578, 713, 796, 802, 920
NlaIV	GGNNCC	1 cut(s)	757
NmeAIII	GCCGAG	1 cut(s)	41
NmuCI	GTSAC	2 cut(s)	19, 538
OliI	CACNNNNGTG	1 cut(s)	139
PaeR7I	CTCGAG	1 cut(s)	951
PagI	TCATGA	2 cut(s)	574, 709
PceI	AGGCCT	1 cut(s)	176
PctI	GAATGC	2 cut(s)	813, 912
PdiI	GCCGGC	1 cut(s)	813
PfeI	GAWTC	3 cut(s)	41, 693, 706
PkrI	GCNGC	2 cut(s)	100, 608
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PsiI	TTATAA	1 cut(s)	993
Psp124BI	GAGCTC	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	757
PspXI	VCTCGAGB	1 cut(s)	951
PstI	CTGCAG	1 cut(s)	141
PvuII	CAGCTG	1 cut(s)	653
RsaI	GTAC	1 cut(s)	891
RsaNI	GTAC	1 cut(s)	890
RseI	CAYNNNNRTG	3 cut(s)	139, 579, 797
SacI	GAGCTC	1 cut(s)	29
SaqAI	TTAA	3 cut(s)	171, 357, 854
SatI	GCNGC	2 cut(s)	99, 607
Sau3AI	GATC	4 cut(s)	319, 394, 795, 1046
SchI	GAGTC	1 cut(s)	79
SduI	GDGCHC	3 cut(s)	29, 418, 1045
SetI	ASST	9 cut(s)	29, 51, 193, 313, 391, 608, 655, 927, 1040
SfaNI	GCATC	5 cut(s)	74, 112, 565, 832, 994
SfcI	CTRYAG	1 cut(s)	137
Sfr274I	CTCGAG	1 cut(s)	951
SlaI	CTCGAG	1 cut(s)	951
SmiMI	CAYNNNNRTG	3 cut(s)	139, 579, 797
SmlI	CTYRAG	1 cut(s)	951
SmoI	CTYRAG	1 cut(s)	951
Sse9I	AATT	8 cut(s)	76, 221, 232, 257, 362, 478, 851, 875
SseBI	AGGCCT	1 cut(s)	176
SsiI	CCGC	3 cut(s)	117, 155, 681
SspMI	CTAG	3 cut(s)	288, 474, 621
SstI	GAGCTC	1 cut(s)	29
StuI	AGGCCT	1 cut(s)	176
TaqI	TCGA	6 cut(s)	44, 51, 83, 105, 952, 1045
TaqII	GACCGA	1 cut(s)	125
TasI	AATT	8 cut(s)	76, 221, 232, 257, 362, 478, 851, 875
TfiI	GAWTC	3 cut(s)	41, 693, 706
Tru1I	TTAA	3 cut(s)	171, 357, 854
Tru9I	TTAA	3 cut(s)	171, 357, 854
TscAI	CASTG	5 cut(s)	37, 141, 146, 234, 244
TseFI	GTSAC	2 cut(s)	19, 538
TseI	GCWGC	2 cut(s)	98, 606
Tsp45I	GTSAC	2 cut(s)	19, 538
TspDTI	ATGAA	3 cut(s)	270, 394, 933
TspRI	CASTG	5 cut(s)	37, 141, 146, 234, 244
XapI	RAATTY	4 cut(s)	76, 232, 257, 875
XhoI	CTCGAG	1 cut(s)	951
XmiI	GTMKAC	1 cut(s)	969
XspI	CTAG	3 cut(s)	288, 474, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.