Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002899

Physical Location & Seq

Genomic Coordinates Forward (+)

67953278 .. 67953946

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015570

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGATTGATCATGTTACATCCAGGCCATCTGTTGTACTTCCAGTTAAGAAATTGGTTAAACTTTGCAGGGAAGAAGGTATTGATCAAGTTGACATGCAAGAAATTGGGGCAGATTTTTACACTAGTAATTTGCACAAGTGGTTCTTCTCCCCTGCTTCGGTTGCATTTTTATATTGTAGGAAGTCAGTCACACATTTAGAATTGCATCATCCTATGGTGTCTCATGACTATGGTAAAGGGTTGGCTATTGAAAGTAGATGGATAGGGACTAGGGATTATAGTCCTTCTTTAGTGGTTCCTTCAGTTGTGGAGTTCACAAATAGGTTTGAAGGAGGTATTGAGGGAATCAAAAGGAGGAATCATGATGCTGTTGTTGTGATGGGTAAGATGTTGGCAAAGGCTTGGGGAACCAATCTTGGGTCTCCGCCAGATATGTGTGCAAGCATGATCATGGTGGGATTACTGGCTTGTTTGGAGGTTTCAAGTGATGATGATGCTTTGAAGTTAAGGACACATATATTGCCATATGCCAAAACATTAAGAAGTGGCAAAAACAACAGGATGCTCGAGTTTCTCATCCAGTCTACAACAAAGTTGATGACTATTATAAGTTCAGAGATGCAATTAATCAGCTTGTTTGTGATGGGTTCACCTGTGCTTGATCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

223

Amino Acids

24.81

Weight (kDa)

7.73

Isoelectric Point (pI)

50.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62130 AT3G62130
fragaria_vesca	FvH4_4g04240 FvH4_6g08442 FvH4_6g08442 FvH4_6g08590 FvH4_6g34050 FvH4_7g09780
malus_domestica	MD12G1200200.v1.1
prunus_persica	Prupe.6G305000_v2.0.a1 Prupe.6G305100_v2.0.a1 Prupe.6G305200_v2.0.a1 Prupe.6G305300_v2.0.a1 Prupe.6G305300_v2.0.a1
pyrus_communis	pycom12g18680
rosa_chinensis	RchiOBHm_Chr2g0123491 RchiOBHm_Chr2g0123501 RchiOBHm_Chr2g0123511 RchiOBHm_Chr3g0458441
rosa_laevigata	RLG00000015569 RLG00000015570 RLG00000025157
rosa_multiflora	Rmu_sc0013809.1_g000004 Rmu_sc0017098.1_g000006 Rmu_sc0017098.1_g000007 Rmu_ssc0000091.1_g000003
rosa_rugosa	Rorug03G0028400 Rorug03G0028700
rosa_samantha	Rh2AG304800 Rh2BG312900 Rh2BG313000 Rh2CG291300 Rh2DG328800 Rh3BG090600 Rh3DG091400
rosa_wichuraiana	Rw0G018550 Rw2G024430 Rw3G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	608
AccI	GTMKAC	1 cut(s)	584
AciI	CCGC	1 cut(s)	425
AcuI	CTGAAG	1 cut(s)	285
AfaI	GTAC	1 cut(s)	36
AfiI	CCNNNNNNNGG	2 cut(s)	157, 417
AgsI	TTSAA	4 cut(s)	251, 329, 483, 502
AhlI	ACTAGT	1 cut(s)	122
AjnI	CCWGG	1 cut(s)	20
AluBI	AGCT	1 cut(s)	633
AluI	AGCT	1 cut(s)	633
Alw26I	GTCTC	2 cut(s)	225, 426
Ama87I	CYCGRG	1 cut(s)	566
AoxI	GGCC	1 cut(s)	23
AseI	ATTAAT	1 cut(s)	626
AsuHPI	GGTGA	1 cut(s)	642
AvaI	CYCGRG	1 cut(s)	566
BccI	CCATC	4 cut(s)	34, 252, 373, 637
BciT130I	CCWGG	1 cut(s)	22
BclI	TGATCA	3 cut(s)	7, 82, 447
BcoDI	GTCTC	2 cut(s)	225, 426
BcuI	ACTAGT	1 cut(s)	122
BfaI	CTAG	2 cut(s)	123, 270
Bme1390I	CCNGG	1 cut(s)	22
BmeT110I	CYCGRG	1 cut(s)	566
BmiI	GGNNCC	2 cut(s)	297, 409
BmrFI	CCNGG	1 cut(s)	22
BmsI	GCATC	5 cut(s)	214, 355, 484, 552, 609
BsaI	GGTCTC	1 cut(s)	426
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 417
Bse1I	ACTGG	3 cut(s)	41, 468, 580
BseBI	CCWGG	1 cut(s)	22
BseGI	GGATG	4 cut(s)	17, 208, 567, 576
BseLI	CCNNNNNNNGG	2 cut(s)	157, 417
BseNI	ACTGG	3 cut(s)	41, 468, 580
BshFI	GGCC	1 cut(s)	25
BsiHKCI	CYCGRG	1 cut(s)	566
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	2 cut(s)	157, 417
BsmAI	GTCTC	2 cut(s)	225, 426
BsmFI	GGGAC	1 cut(s)	280
BsnI	GGCC	1 cut(s)	25
Bso31I	GGTCTC	1 cut(s)	426
BsoBI	CYCGRG	1 cut(s)	566
Bsp143I	GATC	4 cut(s)	7, 82, 447, 661
BspACI	CCGC	1 cut(s)	425
BspANI	GGCC	1 cut(s)	25
BspHI	TCATGA	2 cut(s)	223, 361
BspLI	GGNNCC	2 cut(s)	297, 409
BspTNI	GGTCTC	1 cut(s)	426
BsrI	ACTGG	3 cut(s)	41, 468, 580
BssMI	GATC	4 cut(s)	7, 82, 447, 661
Bst2UI	CCWGG	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	442
BstF5I	GGATG	4 cut(s)	17, 208, 567, 576
BstKTI	GATC	4 cut(s)	10, 85, 450, 664
BstMAI	GTCTC	2 cut(s)	225, 426
BstMBI	GATC	4 cut(s)	7, 82, 447, 661
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	1 cut(s)	22
BstNSI	RCATGY	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	25
BtsCI	GGATG	4 cut(s)	17, 208, 567, 576
Cac8I	GCNNGC	1 cut(s)	442
CciI	TCATGA	2 cut(s)	223, 361
Csp6I	GTAC	1 cut(s)	35
CviAII	CATG	6 cut(s)	11, 94, 224, 362, 445, 451
CviJI	RGCY	5 cut(s)	25, 245, 401, 467, 633
CviKI_1	RGCY	5 cut(s)	25, 245, 401, 467, 633
CviQI	GTAC	1 cut(s)	35
DpnI	GATC	4 cut(s)	9, 84, 449, 663
DpnII	GATC	4 cut(s)	7, 82, 447, 661
EciI	GGCGGA	1 cut(s)	414
Eco31I	GGTCTC	1 cut(s)	426
Eco57I	CTGAAG	1 cut(s)	285
Eco88I	CYCGRG	1 cut(s)	566
EcoRII	CCWGG	1 cut(s)	20
FaeI	CATG	6 cut(s)	14, 97, 227, 365, 448, 454
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	6 cut(s)	10, 93, 223, 361, 444, 450
FauNDI	CATATG	1 cut(s)	526
FbaI	TGATCA	3 cut(s)	7, 82, 447
FblI	GTMKAC	1 cut(s)	584
FokI	GGATG	4 cut(s)	4, 195, 563, 574
FspBI	CTAG	2 cut(s)	123, 270
HaeIII	GGCC	1 cut(s)	25
Hin1II	CATG	6 cut(s)	14, 97, 227, 365, 448, 454
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	2 cut(s)	345, 358
HphI	GGTGA	1 cut(s)	642
Hpy166II	GTNNAC	4 cut(s)	91, 315, 585, 650
Hpy188I	TCNGA	1 cut(s)	616
Hpy188III	TCNNGA	2 cut(s)	224, 362
Hpy8I	GTNNAC	4 cut(s)	91, 315, 585, 650
HpyAV	CCTTC	4 cut(s)	68, 294, 309, 323
HpyCH4V	TGCA	7 cut(s)	66, 97, 133, 164, 205, 440, 622
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
Hsp92II	CATG	6 cut(s)	14, 97, 227, 365, 448, 454
Ksp22I	TGATCA	3 cut(s)	7, 82, 447
Kzo9I	GATC	4 cut(s)	7, 82, 447, 661
LpnPI	CCDG	9 cut(s)	7, 34, 52, 54, 165, 441, 449, 544, 593
LweI	GCATC	5 cut(s)	214, 355, 484, 552, 609
MaeI	CTAG	2 cut(s)	123, 270
MaeIII	GTNAC	2 cut(s)	13, 187
MalI	GATC	4 cut(s)	9, 84, 449, 663
MboI	GATC	4 cut(s)	7, 82, 447, 661
MboII	GAAGA	2 cut(s)	83, 136
MluCI	AATT	5 cut(s)	50, 102, 127, 200, 623
MnlI	CCTC	4 cut(s)	326, 334, 348, 469
MseI	TTAA	5 cut(s)	45, 57, 506, 539, 626
MslI	CAYNNNNRTG	2 cut(s)	228, 449
MspR9I	CCNGG	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeI	CATATG	1 cut(s)	526
NdeII	GATC	4 cut(s)	7, 82, 447, 661
NlaIII	CATG	6 cut(s)	14, 97, 227, 365, 448, 454
NlaIV	GGNNCC	2 cut(s)	297, 409
NmuCI	GTSAC	1 cut(s)	187
NspI	RCATGY	1 cut(s)	97
PaeR7I	CTCGAG	1 cut(s)	566
PagI	TCATGA	2 cut(s)	223, 361
PfeI	GAWTC	2 cut(s)	345, 358
PshBI	ATTAAT	1 cut(s)	626
PsiI	TTATAA	1 cut(s)	608
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
PspN4I	GGNNCC	2 cut(s)	297, 409
PspXI	VCTCGAGB	1 cut(s)	566
RsaI	GTAC	1 cut(s)	36
RsaNI	GTAC	1 cut(s)	35
RseI	CAYNNNNRTG	2 cut(s)	228, 449
SaqAI	TTAA	5 cut(s)	45, 57, 506, 539, 626
Sau3AI	GATC	4 cut(s)	7, 82, 447, 661
ScrFI	CCNGG	1 cut(s)	22
SetI	ASST	6 cut(s)	79, 326, 337, 480, 635, 655
SfaNI	GCATC	5 cut(s)	214, 355, 484, 552, 609
Sfr274I	CTCGAG	1 cut(s)	566
SlaI	CTCGAG	1 cut(s)	566
SmiMI	CAYNNNNRTG	2 cut(s)	228, 449
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
SpeI	ACTAGT	1 cut(s)	122
Sse9I	AATT	5 cut(s)	50, 102, 127, 200, 623
SsiI	CCGC	1 cut(s)	425
SspMI	CTAG	2 cut(s)	123, 270
StyD4I	CCNGG	1 cut(s)	20
TaqI	TCGA	1 cut(s)	567
TasI	AATT	5 cut(s)	50, 102, 127, 200, 623
TatI	WGTACW	1 cut(s)	34
TfiI	GAWTC	2 cut(s)	345, 358
Tru1I	TTAA	5 cut(s)	45, 57, 506, 539, 626
Tru9I	TTAA	5 cut(s)	45, 57, 506, 539, 626
TseFI	GTSAC	1 cut(s)	187
Tsp45I	GTSAC	1 cut(s)	187
VspI	ATTAAT	1 cut(s)	626
XceI	RCATGY	1 cut(s)	97
XhoI	CTCGAG	1 cut(s)	566
XmiI	GTMKAC	1 cut(s)	584
XspI	CTAG	2 cut(s)	123, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.