Rw0G018550

Aminotransferase class-V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00832
OG0002899
Physical Location & Seq
Reverse (-)
19114 .. 20540
1427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G018550.1

Sequence Viewer

Length: 1146 bp
ATGGCTTGTAGGATAATCATGTTCTACCGGTACTATGTTCCTCATCTACTACTTCGTCACCAGAATATCCGAATCTTGAAGCCCAAACTTTCATTTCGAATTTCAAGGGCATCATCTTACCATTATTACCACAACCTTAACCCTACTGATACCCACACCAATTTCCCCATCAAGCCAAAACTTCTTCCTTCATTACAGACTCTGAAATCCAAGCTGAATTTTCTCACCATGATCCGGGATGTTGATGAAATTTCCATTGTAGATAATGCCACCACAGCAGTAGCCATAGTCTTGCAGCAGATGCAGTGGGCCTTCTCTGAAGGTAAATTCAAGAAAGGGGATGCTGTCATCATACTGCAGTGTGCTTATGGCGCAGTGAAGAACTCGATCAAGGCCTATTTTTCGTGTGCTGGCGGGTATGTTATTGAAGTTCCATTTCAATTTCCAGCGAATTACAGTGAAGAAATTATAAGTGAATTTTGGGATGGCTTTGTCAGATTAGCGATTATTGATCATGTTACTTCCATGCCATATGTTGTACTTCCAGTTAAGAAATTGGTTAAAGTTTGCAGGGAAGAAGGTGTTGATCTAGTTTTCATAGATGGGGCTCATGGTGTTGGGTGTGTAGATGTTTACATGCAAGAAATTGGAGCAGATTTTTACACTAGTAATTTGCACAAGTGGTTCTTCTCCCCTGCTTCGGTTGCATTTTTATATTGTAGGAAGTTAGTCACACATTTAGAATTGCATCATCCTATGGTGTCTCATGACTATGTTAAAGGGTTGGCTATTGAAAGTAGTTGGATAGGGACTAGGGATTATAGTCCATCTTTAGTGGTTCCTTCAGTTGCTTGGGGAACCAATCTTGGGTCTCCGCCAGATATGTGTGCAAGCATGATCATGGTGGGAATACCGGCTTGTTTGGAGGTTTCAAGTGATAATGATGCTTTGAAGTTAAGGACACATTTAAGGGAGAGATTTGGTGTTGAAGTCCACATATATTACCAGATGCCAAAACATGAAGAGGTGGCAACAACAACAGGGTATGGTCGAGTTTCTCATCAAGTCTACAACAAAGTTGATGACTATTATAAGTTCAGAGATGCAATTAATCAGCTTGTTTGTGATGGGTTCACCTGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 map00270
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

381

Amino Acids

43.31

Weight (kDa)

7.62

Isoelectric Point (pI)

38.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 66 - 243 2.9e-15 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 470, 1092
AccI GTMKAC 1 cut(s) 1068
AciI CCGC 2 cut(s) 414, 875
AclWI GGATC 1 cut(s) 226
AcsI RAATTY 5 cut(s) 99, 217, 249, 326, 476
AcuI CTGAAG 2 cut(s) 339, 828
AfaI GTAC 2 cut(s) 32, 540
AfiI CCNNNNNNNGG 3 cut(s) 234, 700, 867
AgeI ACCGGT 1 cut(s) 27
AgsI TTSAA 9 cut(s) 79, 105, 331, 428, 440, 794, 933, 952, 989
AhlI ACTAGT 1 cut(s) 665
AluBI AGCT 2 cut(s) 214, 1117
AluI AGCT 2 cut(s) 214, 1117
Alw26I GTCTC 2 cut(s) 768, 876
AlwI GGATC 1 cut(s) 226
AlwNI CAGNNNCTG 1 cut(s) 202
AoxI GGCC 2 cut(s) 309, 393
ApeKI GCWGC 1 cut(s) 295
ApoI RAATTY 5 cut(s) 99, 217, 249, 326, 476
AseI ATTAAT 1 cut(s) 1110
AsiGI ACCGGT 1 cut(s) 27
AspLEI GCGC 1 cut(s) 374
AspS9I GGNCC 1 cut(s) 309
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 3 cut(s) 50, 217, 1126
AsuII TTCGAA 1 cut(s) 97
BanII GRGCYC 1 cut(s) 610
BbvI GCAGC 1 cut(s) 307
BccI CCATC 5 cut(s) 176, 479, 596, 835, 1121
BclI TGATCA 2 cut(s) 511, 897
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 2 cut(s) 768, 876
BcuI ACTAGT 1 cut(s) 665
BfaI CTAG 3 cut(s) 590, 666, 813
BfmI CTRYAG 1 cut(s) 356
BisI GCNGC 1 cut(s) 296
BlsI GCNGC 1 cut(s) 297
Bme1390I CCNGG 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 309
BmiI GGNNCC 2 cut(s) 840, 859
BmrFI CCNGG 1 cut(s) 236
BmsI GCATC 7 cut(s) 119, 291, 331, 757, 934, 999, 1093
Bpu14I TTCGAA 1 cut(s) 97
BpuMI CCSGG 1 cut(s) 236
BsaI GGTCTC 1 cut(s) 876
BsaWI WCCGGW 1 cut(s) 27
Bsc4I CCNNNNNNNGG 3 cut(s) 234, 700, 867
Bse118I RCCGGY 2 cut(s) 27, 913
Bse1I ACTGG 1 cut(s) 545
BseGI GGATG 4 cut(s) 244, 346, 490, 751
BseLI CCNNNNNNNGG 3 cut(s) 234, 700, 867
BseNI ACTGG 1 cut(s) 545
BseXI GCAGC 1 cut(s) 307
BshFI GGCC 2 cut(s) 311, 395
BshTI ACCGGT 1 cut(s) 27
BsiSI CCGG 3 cut(s) 28, 235, 914
BslFI GGGAC 1 cut(s) 823
BslI CCNNNNNNNGG 3 cut(s) 234, 700, 867
BsmAI GTCTC 2 cut(s) 768, 876
BsmFI GGGAC 1 cut(s) 823
BsnI GGCC 2 cut(s) 311, 395
Bso31I GGTCTC 1 cut(s) 876
Bsp119I TTCGAA 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 610
Bsp143I GATC 5 cut(s) 231, 387, 511, 586, 897
BspACI CCGC 2 cut(s) 414, 875
BspANI GGCC 2 cut(s) 311, 395
BspHI TCATGA 1 cut(s) 766
BspLI GGNNCC 2 cut(s) 840, 859
BspMAI CTGCAG 1 cut(s) 360
BspPI GGATC 1 cut(s) 226
BspT104I TTCGAA 1 cut(s) 97
BspTNI GGTCTC 1 cut(s) 876
BsrFI RCCGGY 2 cut(s) 27, 913
BsrI ACTGG 1 cut(s) 545
BssAI RCCGGY 2 cut(s) 27, 913
BssMI GATC 5 cut(s) 231, 387, 511, 586, 897
Bst4CI ACNGT 1 cut(s) 458
Bst6I CTCTTC 1 cut(s) 1017
BstAPI GCANNNNNTGC 1 cut(s) 301
BstBI TTCGAA 1 cut(s) 97
BstC8I GCNNGC 2 cut(s) 412, 892
BstF5I GGATG 4 cut(s) 244, 346, 490, 751
BstHHI GCGC 1 cut(s) 374
BstKTI GATC 5 cut(s) 234, 390, 514, 589, 900
BstMAI GTCTC 2 cut(s) 768, 876
BstMBI GATC 5 cut(s) 231, 387, 511, 586, 897
BstMWI GCNNNNNNNGC 4 cut(s) 275, 301, 371, 704
BstNSI RCATGY 1 cut(s) 640
BstSCI CCNGG 1 cut(s) 234
BstSFI CTRYAG 1 cut(s) 356
BstV1I GCAGC 1 cut(s) 307
BsuRI GGCC 2 cut(s) 311, 395
BtsCI GGATG 4 cut(s) 244, 346, 490, 751
BtsI GCAGTG 3 cut(s) 311, 365, 381
BtsIMutI CAGTG 4 cut(s) 311, 365, 381, 463
Cac8I GCNNGC 2 cut(s) 412, 892
CaiI CAGNNNCTG 1 cut(s) 202
CciI TCATGA 1 cut(s) 766
CfoI GCGC 1 cut(s) 374
Cfr10I RCCGGY 2 cut(s) 27, 913
Cfr13I GGNCC 1 cut(s) 309
Csp6I GTAC 2 cut(s) 31, 539
CspAI ACCGGT 1 cut(s) 27
CviQI GTAC 2 cut(s) 31, 539
DpnI GATC 5 cut(s) 233, 389, 513, 588, 899
DpnII GATC 5 cut(s) 231, 387, 511, 586, 897
Eam1104I CTCTTC 1 cut(s) 1017
EarI CTCTTC 1 cut(s) 1017
EciI GGCGGA 1 cut(s) 864
Eco147I AGGCCT 1 cut(s) 395
Eco24I GRGCYC 1 cut(s) 610
Eco31I GGTCTC 1 cut(s) 876
Eco57I CTGAAG 2 cut(s) 339, 828
EcoT38I GRGCYC 1 cut(s) 610
FalI AAGNNNNNCTT 2 cut(s) 671, 703
FaqI GGGAC 1 cut(s) 823
FauI CCCGC 1 cut(s) 407
FauNDI CATATG 1 cut(s) 532
FbaI TGATCA 2 cut(s) 511, 897
FblI GTMKAC 1 cut(s) 1068
Fnu4HI GCNGC 1 cut(s) 296
FokI GGATG 4 cut(s) 251, 353, 497, 738
FriOI GRGCYC 1 cut(s) 610
Fsp4HI GCNGC 1 cut(s) 296
FspBI CTAG 3 cut(s) 590, 666, 813
GlaI GCGC 1 cut(s) 373
GluI GCNGC 1 cut(s) 296
HaeIII GGCC 2 cut(s) 311, 395
HapII CCGG 3 cut(s) 28, 235, 914
HhaI GCGC 1 cut(s) 374
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HinfI GANTC 2 cut(s) 72, 199
HpaII CCGG 3 cut(s) 28, 235, 914
HphI GGTGA 3 cut(s) 50, 217, 1126
Hpy166II GTNNAC 4 cut(s) 634, 994, 1069, 1134
Hpy188I TCNGA 5 cut(s) 71, 204, 319, 497, 1100
Hpy188III TCNNGA 3 cut(s) 76, 331, 767
Hpy8I GTNNAC 4 cut(s) 634, 994, 1069, 1134
HpyAV CCTTC 5 cut(s) 198, 314, 322, 572, 852
HpyCH4III ACNGT 1 cut(s) 458
HpyF10VI GCNNNNNNNGC 4 cut(s) 275, 301, 371, 704
HspAI GCGC 1 cut(s) 372
Ksp22I TGATCA 2 cut(s) 511, 897
Kzo9I GATC 5 cut(s) 231, 387, 511, 586, 897
LmnI GCTCC 1 cut(s) 650
Lsp1109I GCAGC 1 cut(s) 307
LweI GCATC 7 cut(s) 119, 291, 331, 757, 934, 999, 1093
MaeI CTAG 3 cut(s) 590, 666, 813
MaeIII GTNAC 3 cut(s) 56, 517, 730
MalI GATC 5 cut(s) 233, 389, 513, 588, 899
MboI GATC 5 cut(s) 231, 387, 511, 586, 897
MboII GAAGA 6 cut(s) 176, 391, 473, 587, 679, 1034
MhlI GDGCHC 1 cut(s) 610
MlyI GAGTC 1 cut(s) 193
MmeI TCCRAC 1 cut(s) 782
MnlI CCTC 3 cut(s) 51, 919, 1018
MseI TTAA 7 cut(s) 138, 549, 561, 777, 956, 968, 1110
MslI CAYNNNNRTG 2 cut(s) 771, 899
MspI CCGG 3 cut(s) 28, 235, 914
MspR9I CCNGG 1 cut(s) 236
MwoI GCNNNNNNNGC 4 cut(s) 275, 301, 371, 704
NciI CCSGG 1 cut(s) 236
NdeI CATATG 1 cut(s) 532
NdeII GATC 5 cut(s) 231, 387, 511, 586, 897
NlaIV GGNNCC 2 cut(s) 840, 859
NmuCI GTSAC 2 cut(s) 56, 730
NspI RCATGY 1 cut(s) 640
NspV TTCGAA 1 cut(s) 97
PagI TCATGA 1 cut(s) 766
PceI AGGCCT 1 cut(s) 395
PfeI GAWTC 1 cut(s) 72
PfoI TCCNGGA 1 cut(s) 234
PinAI ACCGGT 1 cut(s) 27
PkrI GCNGC 1 cut(s) 297
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PshBI ATTAAT 1 cut(s) 1110
PsiI TTATAA 2 cut(s) 470, 1092
PspN4I GGNNCC 2 cut(s) 840, 859
PspPI GGNCC 1 cut(s) 309
PstI CTGCAG 1 cut(s) 360
PstNI CAGNNNCTG 1 cut(s) 202
RsaI GTAC 2 cut(s) 32, 540
RsaNI GTAC 2 cut(s) 31, 539
RseI CAYNNNNRTG 2 cut(s) 771, 899
SaqAI TTAA 7 cut(s) 138, 549, 561, 777, 956, 968, 1110
SatI GCNGC 1 cut(s) 296
Sau3AI GATC 5 cut(s) 231, 387, 511, 586, 897
Sau96I GGNCC 1 cut(s) 309
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 1 cut(s) 236
SduI GDGCHC 1 cut(s) 610
SetI ASST 8 cut(s) 138, 216, 325, 583, 930, 1029, 1119, 1139
SfaNI GCATC 7 cut(s) 119, 291, 331, 757, 934, 999, 1093
SfcI CTRYAG 1 cut(s) 356
SfuI TTCGAA 1 cut(s) 97
SmiMI CAYNNNNRTG 2 cut(s) 771, 899
SpeI ACTAGT 1 cut(s) 665
SseBI AGGCCT 1 cut(s) 395
SsiI CCGC 2 cut(s) 414, 875
SspMI CTAG 3 cut(s) 590, 666, 813
StuI AGGCCT 1 cut(s) 395
StyD4I CCNGG 1 cut(s) 234
TaaI ACNGT 1 cut(s) 458
TaqI TCGA 3 cut(s) 97, 386, 1051
TatI WGTACW 1 cut(s) 538
TfiI GAWTC 1 cut(s) 72
Tru1I TTAA 7 cut(s) 138, 549, 561, 777, 956, 968, 1110
Tru9I TTAA 7 cut(s) 138, 549, 561, 777, 956, 968, 1110
TscAI CASTG 4 cut(s) 311, 365, 381, 463
TseFI GTSAC 2 cut(s) 56, 730
TseI GCWGC 1 cut(s) 295
Tsp45I GTSAC 2 cut(s) 56, 730
TspDTI ATGAA 5 cut(s) 81, 180, 261, 586, 1035
TspRI CASTG 4 cut(s) 311, 365, 381, 463
VspI ATTAAT 1 cut(s) 1110
XapI RAATTY 5 cut(s) 99, 217, 249, 326, 476
XceI RCATGY 1 cut(s) 640
XmiI GTMKAC 1 cut(s) 1068
XspI CTAG 3 cut(s) 590, 666, 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.