Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002899

Physical Location & Seq

Genomic Coordinates Reverse (-)

38364068 .. 38365381

Gene Structure 1314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG304800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCTTGTAGGATAATCATGCTCCACCGGTACTATGTTCCTCATCTACTACTTCGTCATCAGAATATCCGAATCTTGAAGCCCAAACTTTCATTTCGAATTTCAAGGGCATCATCTTACCATTATTACCACAACCTTAACCCTACTGATACCCACACCAATTTCCCCATCAAGCCAAAACTTTCTTCCTTCATTACAGACTCTGAAATCCAAGCTGAATTTTCTCACCATGATCCGGGTGTTGCCCGGATAAACAATGGCAGCTTTGGTTGCTCCCCCGCTTCTGTTATCTCTGAATTGCAACAATGGCAACTCAAATGGCTGCGCCAGCCGGACTATTTCTTATTCAATGAGCTCCACAAGGGGATACTCAAATCAAGAAACACAGTTCTAGAACTTATCAATGCACAGGATGTTGATGAAATTTCCATTGTAGATAATGCCACCACAGCAGTAGCCATAGTCTTGCAGCAAATGCAGTGGGCCTTCTCTGAAGGCAAATTCAAGAAAGGGGATGTTGTCATCATACTACAGTTTGAAGGCGGTATTAAGGGAATCAAAATGATGAATCATGATGCTGTTGTTGAGATGGGTAAGATGTTGGCAAAGGCTTGGGGAACCAATCTTGGGTCTCCGCCAGATATGTGTGCAAGCATGATCATGGTGGGAATACCGGCTTGTTTGGAGGTTTCAAGTGATGATGATGCTTTGAAGTTAAGGACACATTTAAGGGAGAAATTTGGTGTTGAAGTCCACATATTACCAGATGCCAAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

259

Amino Acids

29.31

Weight (kDa)

8.3

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62130 AT3G62130
fragaria_vesca	FvH4_4g04240 FvH4_6g08442 FvH4_6g08442 FvH4_6g08590 FvH4_6g34050 FvH4_7g09780
malus_domestica	MD12G1200200.v1.1
prunus_persica	Prupe.6G305000_v2.0.a1 Prupe.6G305100_v2.0.a1 Prupe.6G305200_v2.0.a1 Prupe.6G305300_v2.0.a1 Prupe.6G305300_v2.0.a1
pyrus_communis	pycom12g18680
rosa_chinensis	RchiOBHm_Chr2g0123491 RchiOBHm_Chr2g0123501 RchiOBHm_Chr2g0123511 RchiOBHm_Chr3g0458441
rosa_laevigata	RLG00000015569 RLG00000015570 RLG00000025157
rosa_multiflora	Rmu_sc0013809.1_g000004 Rmu_sc0017098.1_g000006 Rmu_sc0017098.1_g000007 Rmu_ssc0000091.1_g000003
rosa_rugosa	Rorug03G0028400 Rorug03G0028700
rosa_samantha	Rh2AG304800 Rh2BG312900 Rh2BG313000 Rh2CG291300 Rh2DG328800 Rh3BG090600 Rh3DG091400
rosa_wichuraiana	Rw0G018550 Rw2G024430 Rw3G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	279, 543, 635
AclWI	GGATC	1 cut(s)	227
AcsI	RAATTY	5 cut(s)	99, 218, 423, 500, 737
AcuI	CTGAAG	1 cut(s)	513
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	235, 627
AgeI	ACCGGT	1 cut(s)	27
AgsI	TTSAA	8 cut(s)	79, 105, 349, 505, 539, 693, 712, 749
AjuI	GAANNNNNNNTTGG	2 cut(s)	169, 201
AluBI	AGCT	3 cut(s)	215, 264, 355
AluI	AGCT	3 cut(s)	215, 264, 355
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	1 cut(s)	636
AlwI	GGATC	1 cut(s)	227
AlwNI	CAGNNNCTG	1 cut(s)	203
AoxI	GGCC	1 cut(s)	483
ApeKI	GCWGC	3 cut(s)	261, 322, 469
ApoI	RAATTY	5 cut(s)	99, 218, 423, 500, 737
AsiGI	ACCGGT	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	327
AspS9I	GGNCC	1 cut(s)	483
AsuC2I	CCSGG	2 cut(s)	237, 247
AsuHPI	GGTGA	1 cut(s)	218
AsuII	TTCGAA	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	3 cut(s)	273, 309, 481
BccI	CCATC	2 cut(s)	176, 583
BciVI	GTATCC	1 cut(s)	360
BclI	TGATCA	1 cut(s)	657
BcnI	CCSGG	2 cut(s)	237, 247
BcoDI	GTCTC	1 cut(s)	636
BfaI	CTAG	1 cut(s)	392
BfmI	CTRYAG	1 cut(s)	530
BfuI	GTATCC	1 cut(s)	360
BisI	GCNGC	3 cut(s)	262, 323, 470
BlsI	GCNGC	3 cut(s)	263, 324, 471
Bme1390I	CCNGG	2 cut(s)	237, 247
BmgT120I	GGNCC	1 cut(s)	483
BmiI	GGNNCC	1 cut(s)	619
BmrFI	CCNGG	2 cut(s)	237, 247
BmsI	GCATC	4 cut(s)	119, 565, 694, 757
Bpu14I	TTCGAA	1 cut(s)	97
BpuMI	CCSGG	2 cut(s)	237, 247
BsaI	GGTCTC	1 cut(s)	636
BsaWI	WCCGGW	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 627
Bse118I	RCCGGY	2 cut(s)	27, 673
BseGI	GGATG	2 cut(s)	418, 520
BseLI	CCNNNNNNNGG	2 cut(s)	235, 627
BseXI	GCAGC	3 cut(s)	273, 309, 481
BshFI	GGCC	1 cut(s)	485
BshTI	ACCGGT	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	5 cut(s)	28, 236, 247, 332, 674
BslI	CCNNNNNNNGG	2 cut(s)	235, 627
BsmAI	GTCTC	1 cut(s)	636
BsnI	GGCC	1 cut(s)	485
Bso31I	GGTCTC	1 cut(s)	636
Bsp119I	TTCGAA	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	2 cut(s)	232, 657
BspACI	CCGC	3 cut(s)	279, 543, 635
BspANI	GGCC	1 cut(s)	485
BspHI	TCATGA	1 cut(s)	571
BspLI	GGNNCC	1 cut(s)	619
BspPI	GGATC	1 cut(s)	227
BspT104I	TTCGAA	1 cut(s)	97
BspTNI	GGTCTC	1 cut(s)	636
BsrFI	RCCGGY	2 cut(s)	27, 673
BssAI	RCCGGY	2 cut(s)	27, 673
BssMI	GATC	2 cut(s)	232, 657
Bst4CI	ACNGT	2 cut(s)	388, 534
BstAPI	GCANNNNNTGC	1 cut(s)	475
BstBI	TTCGAA	1 cut(s)	97
BstC8I	GCNNGC	2 cut(s)	329, 652
BstF5I	GGATG	2 cut(s)	418, 520
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	2 cut(s)	235, 660
BstMAI	GTCTC	1 cut(s)	636
BstMBI	GATC	2 cut(s)	232, 657
BstMWI	GCNNNNNNNGC	5 cut(s)	270, 307, 328, 449, 475
BstSCI	CCNGG	2 cut(s)	235, 245
BstSFI	CTRYAG	1 cut(s)	530
BstV1I	GCAGC	3 cut(s)	273, 309, 481
BsuI	GTATCC	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	485
BtsCI	GGATG	2 cut(s)	418, 520
BtsI	GCAGTG	1 cut(s)	485
BtsIMutI	CAGTG	1 cut(s)	485
Cac8I	GCNNGC	2 cut(s)	329, 652
CaiI	CAGNNNCTG	1 cut(s)	203
CciI	TCATGA	1 cut(s)	571
CfoI	GCGC	1 cut(s)	327
Cfr10I	RCCGGY	2 cut(s)	27, 673
Cfr13I	GGNCC	1 cut(s)	483
Csp6I	GTAC	1 cut(s)	31
CspAI	ACCGGT	1 cut(s)	27
CspCI	CAANNNNNGTGG	2 cut(s)	461, 496
CviAII	CATG	6 cut(s)	19, 230, 572, 655, 661, 777
CviQI	GTAC	1 cut(s)	31
DpnI	GATC	2 cut(s)	234, 659
DpnII	GATC	2 cut(s)	232, 657
EciI	GGCGGA	1 cut(s)	624
Ecl136II	GAGCTC	1 cut(s)	355
Eco24I	GRGCYC	1 cut(s)	357
Eco31I	GGTCTC	1 cut(s)	636
Eco53kI	GAGCTC	1 cut(s)	355
Eco57I	CTGAAG	1 cut(s)	513
EcoICRI	GAGCTC	1 cut(s)	355
EcoT38I	GRGCYC	1 cut(s)	357
FaeI	CATG	6 cut(s)	22, 233, 575, 658, 664, 780
FatI	CATG	6 cut(s)	18, 229, 571, 654, 660, 776
FauI	CCCGC	1 cut(s)	286
FbaI	TGATCA	1 cut(s)	657
Fnu4HI	GCNGC	3 cut(s)	262, 323, 470
FokI	GGATG	2 cut(s)	425, 527
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	3 cut(s)	262, 323, 470
FspBI	CTAG	1 cut(s)	392
GlaI	GCGC	1 cut(s)	326
GluI	GCNGC	3 cut(s)	262, 323, 470
HaeIII	GGCC	1 cut(s)	485
HapII	CCGG	5 cut(s)	28, 236, 247, 332, 674
HhaI	GCGC	1 cut(s)	327
Hin1II	CATG	6 cut(s)	22, 233, 575, 658, 664, 780
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HinfI	GANTC	4 cut(s)	72, 200, 555, 568
HpaII	CCGG	5 cut(s)	28, 236, 247, 332, 674
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	1 cut(s)	754
Hpy188I	TCNGA	5 cut(s)	63, 71, 205, 295, 493
Hpy188III	TCNNGA	5 cut(s)	76, 378, 392, 505, 572
Hpy8I	GTNNAC	1 cut(s)	754
HpyAV	CCTTC	4 cut(s)	199, 488, 496, 533
HpyCH4III	ACNGT	2 cut(s)	388, 534
HpyCH4V	TGCA	5 cut(s)	301, 407, 469, 478, 650
HpyF10VI	GCNNNNNNNGC	5 cut(s)	270, 307, 328, 449, 475
Hsp92II	CATG	6 cut(s)	22, 233, 575, 658, 664, 780
HspAI	GCGC	1 cut(s)	325
Ksp22I	TGATCA	1 cut(s)	657
Kzo9I	GATC	2 cut(s)	232, 657
LmnI	GCTCC	3 cut(s)	27, 278, 360
LpnPI	CCDG	8 cut(s)	41, 249, 260, 341, 345, 395, 651, 687
Lsp1109I	GCAGC	3 cut(s)	273, 309, 481
LweI	GCATC	4 cut(s)	119, 565, 694, 757
MaeI	CTAG	1 cut(s)	392
MalI	GATC	2 cut(s)	234, 659
MboI	GATC	2 cut(s)	232, 657
MboII	GAAGA	1 cut(s)	177
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	7 cut(s)	99, 160, 218, 296, 423, 500, 737
MlyI	GAGTC	1 cut(s)	194
MnlI	CCTC	2 cut(s)	51, 679
MseI	TTAA	4 cut(s)	138, 549, 716, 728
MslI	CAYNNNNRTG	1 cut(s)	659
MspI	CCGG	5 cut(s)	28, 236, 247, 332, 674
MspR9I	CCNGG	2 cut(s)	237, 247
MwoI	GCNNNNNNNGC	5 cut(s)	270, 307, 328, 449, 475
NciI	CCSGG	2 cut(s)	237, 247
NdeII	GATC	2 cut(s)	232, 657
NlaIII	CATG	6 cut(s)	22, 233, 575, 658, 664, 780
NlaIV	GGNNCC	1 cut(s)	619
NspV	TTCGAA	1 cut(s)	97
PagI	TCATGA	1 cut(s)	571
PfeI	GAWTC	3 cut(s)	72, 555, 568
PinAI	ACCGGT	1 cut(s)	27
PkrI	GCNGC	3 cut(s)	263, 324, 471
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
Psp124BI	GAGCTC	1 cut(s)	357
PspN4I	GGNNCC	1 cut(s)	619
PspPI	GGNCC	1 cut(s)	483
PstNI	CAGNNNCTG	1 cut(s)	203
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	659
SacI	GAGCTC	1 cut(s)	357
SaqAI	TTAA	4 cut(s)	138, 549, 716, 728
SatI	GCNGC	3 cut(s)	262, 323, 470
Sau3AI	GATC	2 cut(s)	232, 657
Sau96I	GGNCC	1 cut(s)	483
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	2 cut(s)	237, 247
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	5 cut(s)	138, 217, 266, 357, 690
SfaNI	GCATC	4 cut(s)	119, 565, 694, 757
SfcI	CTRYAG	1 cut(s)	530
SfuI	TTCGAA	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	659
Sse9I	AATT	7 cut(s)	99, 160, 218, 296, 423, 500, 737
SsiI	CCGC	3 cut(s)	279, 543, 635
SspMI	CTAG	1 cut(s)	392
SstI	GAGCTC	1 cut(s)	357
StyD4I	CCNGG	2 cut(s)	235, 245
TaaI	ACNGT	2 cut(s)	388, 534
TaqI	TCGA	1 cut(s)	97
TasI	AATT	7 cut(s)	99, 160, 218, 296, 423, 500, 737
TfiI	GAWTC	3 cut(s)	72, 555, 568
Tru1I	TTAA	4 cut(s)	138, 549, 716, 728
Tru9I	TTAA	4 cut(s)	138, 549, 716, 728
TscAI	CASTG	1 cut(s)	485
TseI	GCWGC	3 cut(s)	261, 322, 469
TspDTI	ATGAA	4 cut(s)	81, 181, 435, 581
TspRI	CASTG	1 cut(s)	485
XapI	RAATTY	5 cut(s)	99, 218, 423, 500, 737
XbaI	TCTAGA	1 cut(s)	391
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.