Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017098.1

Orthogroup ID

OG0002899

Physical Location & Seq

Genomic Coordinates Reverse (-)

20333 .. 21034

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017098.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atggcttgccggataatcatgttctaccggtactatgttgctcatctacgactttgtcatcagaatatccaaatcttgaagcccaagctttcatttcgaatttcaagggcatcctcttaccattattaccacaaccttaaccctactgatacccaaaccaatttccccatcaagccaaaactttcttccttcattacagactctgaaatccaagctgaattttctcaccatgatccgggtgttgcccggataaacaatggcagctttggttgctcccccgcttctgttatctctgaattgcaacaatggcaactcaaatggctgcgccagccggactatttcttattcaatgagctccacaaggggatactcaaatcaagaaacacagttcaagaacttatcaacgcacaggatgttgatgaaatttccattgtagataatgccaccacagcagtagccatagacttgcagctgatgcagtgggccttctctgaaggcaaattcaagaaaggggatgctgtcatcatactgcagtgtgcttatggcgcggtgaagaactccatcaaggcctattttttgcgtgctggcggggatgttattgaagttccatttcaatttccagtgaattacactgaagaaattataagtgaatttcggatggctttggtgaaggaaaggctagtggtagaagagtcagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

233

Amino Acids

26.77

Weight (kDa)

6.66

Isoelectric Point (pI)

46.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62130 AT3G62130
fragaria_vesca	FvH4_4g04240 FvH4_6g08442 FvH4_6g08442 FvH4_6g08590 FvH4_6g34050 FvH4_7g09780
malus_domestica	MD12G1200200.v1.1
prunus_persica	Prupe.6G305000_v2.0.a1 Prupe.6G305100_v2.0.a1 Prupe.6G305200_v2.0.a1 Prupe.6G305300_v2.0.a1 Prupe.6G305300_v2.0.a1
pyrus_communis	pycom12g18680
rosa_chinensis	RchiOBHm_Chr2g0123491 RchiOBHm_Chr2g0123501 RchiOBHm_Chr2g0123511 RchiOBHm_Chr3g0458441
rosa_laevigata	RLG00000015569 RLG00000015570 RLG00000025157
rosa_multiflora	Rmu_sc0013809.1_g000004 Rmu_sc0017098.1_g000006 Rmu_sc0017098.1_g000007 Rmu_ssc0000091.1_g000003
rosa_rugosa	Rorug03G0028400 Rorug03G0028700
rosa_samantha	Rh2AG304800 Rh2BG312900 Rh2BG313000 Rh2CG291300 Rh2DG328800 Rh3BG090600 Rh3DG091400
rosa_wichuraiana	Rw0G018550 Rw2G024430 Rw3G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	644
AccII	CGCG	1 cut(s)	548
AciI	CCGC	3 cut(s)	279, 548, 588
AclWI	GGATC	1 cut(s)	227
AcsI	RAATTY	5 cut(s)	99, 218, 423, 500, 650
AcuI	CTGAAG	2 cut(s)	513, 654
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgeI	ACCGGT	1 cut(s)	27
AgsI	TTSAA	7 cut(s)	79, 105, 349, 392, 505, 602, 614
AjuI	GAANNNNNNNTTGG	2 cut(s)	169, 201
AluBI	AGCT	5 cut(s)	88, 215, 264, 355, 472
AluI	AGCT	5 cut(s)	88, 215, 264, 355, 472
Alw21I	GWGCWC	1 cut(s)	357
AlwI	GGATC	1 cut(s)	227
AlwNI	CAGNNNCTG	1 cut(s)	203
AoxI	GGCC	2 cut(s)	483, 567
ApeKI	GCWGC	3 cut(s)	261, 322, 469
ApoI	RAATTY	5 cut(s)	99, 218, 423, 500, 650
AsiGI	ACCGGT	1 cut(s)	27
AspLEI	GCGC	2 cut(s)	327, 548
AspS9I	GGNCC	1 cut(s)	483
AsuC2I	CCSGG	2 cut(s)	237, 247
AsuHPI	GGTGA	3 cut(s)	218, 562, 679
AsuII	TTCGAA	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	3 cut(s)	273, 309, 481
BccI	CCATC	3 cut(s)	176, 569, 652
BciVI	GTATCC	1 cut(s)	360
BcnI	CCSGG	2 cut(s)	237, 247
BfaI	CTAG	1 cut(s)	680
BfmI	CTRYAG	1 cut(s)	530
BfuI	GTATCC	1 cut(s)	360
BisI	GCNGC	3 cut(s)	262, 323, 470
BlsI	GCNGC	3 cut(s)	263, 324, 471
Bme1390I	CCNGG	2 cut(s)	237, 247
BmgT120I	GGNCC	1 cut(s)	483
BmrFI	CCNGG	2 cut(s)	237, 247
BmsI	GCATC	3 cut(s)	119, 465, 505
Bpu14I	TTCGAA	1 cut(s)	97
BpuMI	CCSGG	2 cut(s)	237, 247
BsaWI	WCCGGW	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse118I	RCCGGY	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	620
BseGI	GGATG	5 cut(s)	110, 418, 520, 598, 663
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseNI	ACTGG	1 cut(s)	620
BseXI	GCAGC	3 cut(s)	273, 309, 481
Bsh1236I	CGCG	1 cut(s)	548
BshFI	GGCC	2 cut(s)	485, 569
BshTI	ACCGGT	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	5 cut(s)	10, 28, 236, 247, 332
BslI	CCNNNNNNNGG	1 cut(s)	235
BsnI	GGCC	2 cut(s)	485, 569
Bsp119I	TTCGAA	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	1 cut(s)	232
BspACI	CCGC	3 cut(s)	279, 548, 588
BspANI	GGCC	2 cut(s)	485, 569
BspFNI	CGCG	1 cut(s)	548
BspMAI	CTGCAG	1 cut(s)	534
BspPI	GGATC	1 cut(s)	227
BspT104I	TTCGAA	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	620
BssAI	RCCGGY	1 cut(s)	27
BssMI	GATC	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	388
Bst6I	CTCTTC	1 cut(s)	684
BstAPI	GCANNNNNTGC	1 cut(s)	475
BstBI	TTCGAA	1 cut(s)	97
BstC8I	GCNNGC	4 cut(s)	7, 329, 582, 586
BstF5I	GGATG	5 cut(s)	110, 418, 520, 598, 663
BstFNI	CGCG	1 cut(s)	548
BstHHI	GCGC	2 cut(s)	327, 548
BstKTI	GATC	1 cut(s)	235
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	6 cut(s)	270, 307, 328, 449, 475, 545
BstSCI	CCNGG	2 cut(s)	235, 245
BstSFI	CTRYAG	1 cut(s)	530
BstUI	CGCG	1 cut(s)	548
BstV1I	GCAGC	3 cut(s)	273, 309, 481
BsuI	GTATCC	1 cut(s)	360
BsuRI	GGCC	2 cut(s)	485, 569
BtsCI	GGATG	5 cut(s)	110, 418, 520, 598, 663
BtsI	GCAGTG	2 cut(s)	485, 539
BtsIMutI	CAGTG	4 cut(s)	485, 539, 627, 630
Cac8I	GCNNGC	4 cut(s)	7, 329, 582, 586
CaiI	CAGNNNCTG	1 cut(s)	203
CfoI	GCGC	2 cut(s)	327, 548
Cfr10I	RCCGGY	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	483
Csp6I	GTAC	1 cut(s)	31
CspAI	ACCGGT	1 cut(s)	27
CviAII	CATG	2 cut(s)	19, 230
CviQI	GTAC	1 cut(s)	31
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
Eam1104I	CTCTTC	1 cut(s)	684
EarI	CTCTTC	1 cut(s)	684
Ecl136II	GAGCTC	1 cut(s)	355
Eco147I	AGGCCT	1 cut(s)	569
Eco24I	GRGCYC	1 cut(s)	357
Eco53kI	GAGCTC	1 cut(s)	355
Eco57I	CTGAAG	2 cut(s)	513, 654
EcoICRI	GAGCTC	1 cut(s)	355
EcoT38I	GRGCYC	1 cut(s)	357
FaeI	CATG	2 cut(s)	22, 233
FaiI	YATR	7 cut(s)	20, 36, 231, 461, 527, 543, 644
FatI	CATG	2 cut(s)	18, 229
FauI	CCCGC	2 cut(s)	286, 581
Fnu4HI	GCNGC	3 cut(s)	262, 323, 470
FokI	GGATG	5 cut(s)	97, 425, 527, 605, 670
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	3 cut(s)	262, 323, 470
FspBI	CTAG	1 cut(s)	680
GlaI	GCGC	2 cut(s)	326, 547
GluI	GCNGC	3 cut(s)	262, 323, 470
HaeIII	GGCC	2 cut(s)	485, 569
HapII	CCGG	5 cut(s)	10, 28, 236, 247, 332
HhaI	GCGC	2 cut(s)	327, 548
Hin1II	CATG	2 cut(s)	22, 233
Hin6I	GCGC	2 cut(s)	325, 546
HinP1I	GCGC	2 cut(s)	325, 546
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	2 cut(s)	200, 692
HpaII	CCGG	5 cut(s)	10, 28, 236, 247, 332
HphI	GGTGA	3 cut(s)	218, 562, 679
Hpy188I	TCNGA	6 cut(s)	63, 205, 295, 493, 657, 697
Hpy188III	TCNNGA	4 cut(s)	76, 378, 392, 505
HpyAV	CCTTC	4 cut(s)	199, 488, 496, 664
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4V	TGCA	4 cut(s)	301, 469, 478, 532
HpyF10VI	GCNNNNNNNGC	6 cut(s)	270, 307, 328, 449, 475, 545
Hsp92II	CATG	2 cut(s)	22, 233
HspAI	GCGC	2 cut(s)	325, 546
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	2 cut(s)	278, 360
LpnPI	CCDG	9 cut(s)	23, 41, 249, 260, 341, 345, 395, 570, 633
Lsp1109I	GCAGC	3 cut(s)	273, 309, 481
LweI	GCATC	3 cut(s)	119, 465, 505
MaeI	CTAG	1 cut(s)	680
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	4 cut(s)	177, 565, 647, 701
MhlI	GDGCHC	1 cut(s)	357
MlyI	GAGTC	2 cut(s)	194, 701
MnlI	CCTC	1 cut(s)	124
MseI	TTAA	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	472
MspI	CCGG	5 cut(s)	10, 28, 236, 247, 332
MspR9I	CCNGG	2 cut(s)	237, 247
MvnI	CGCG	1 cut(s)	548
MwoI	GCNNNNNNNGC	6 cut(s)	270, 307, 328, 449, 475, 545
NciI	CCSGG	2 cut(s)	237, 247
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	2 cut(s)	22, 233
NspV	TTCGAA	1 cut(s)	97
PceI	AGGCCT	1 cut(s)	569
PflFI	GACNNNGTC	1 cut(s)	54
PinAI	ACCGGT	1 cut(s)	27
PkrI	GCNGC	3 cut(s)	263, 324, 471
PleI	GAGTC	2 cut(s)	194, 700
PpsI	GAGTC	2 cut(s)	194, 700
PsiI	TTATAA	1 cut(s)	644
Psp124BI	GAGCTC	1 cut(s)	357
PspPI	GGNCC	1 cut(s)	483
PstI	CTGCAG	1 cut(s)	534
PstNI	CAGNNNCTG	1 cut(s)	203
PsyI	GACNNNGTC	1 cut(s)	54
PvuII	CAGCTG	1 cut(s)	472
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SacI	GAGCTC	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	3 cut(s)	262, 323, 470
Sau3AI	GATC	1 cut(s)	232
Sau96I	GGNCC	1 cut(s)	483
SchI	GAGTC	2 cut(s)	194, 701
ScrFI	CCNGG	2 cut(s)	237, 247
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	6 cut(s)	90, 138, 217, 266, 357, 474
SfaNI	GCATC	3 cut(s)	119, 465, 505
SfcI	CTRYAG	1 cut(s)	530
SfuI	TTCGAA	1 cut(s)	97
SseBI	AGGCCT	1 cut(s)	569
SsiI	CCGC	3 cut(s)	279, 548, 588
SspMI	CTAG	1 cut(s)	680
SstI	GAGCTC	1 cut(s)	357
StuI	AGGCCT	1 cut(s)	569
StyD4I	CCNGG	2 cut(s)	235, 245
TaaI	ACNGT	1 cut(s)	388
TaqI	TCGA	1 cut(s)	97
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	4 cut(s)	485, 539, 627, 637
TseI	GCWGC	3 cut(s)	261, 322, 469
TspDTI	ATGAA	3 cut(s)	81, 181, 435
TspRI	CASTG	4 cut(s)	485, 539, 627, 637
Tth111I	GACNNNGTC	1 cut(s)	54
XapI	RAATTY	5 cut(s)	99, 218, 423, 500, 650
XspI	CTAG	1 cut(s)	680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.