RchiOBHm_Chr2g0123511

Aminotransferase class-V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002899
Physical Location & Seq
Reverse (-)
36708083 .. 36709193
1111 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49580

Sequence Viewer

Length: 1005 bp
ATGGCTTGTAGGATAATCATGTTCTACCGGTACTATGTTCCTCATCTACTACTTCGTCACCAGAATATCCGAATCTTGAAGCCCAAACTTTCATTTCGAATTTCAAGGGCATCATCTTACCATTATTACCACAACCTTAACCATACTGATACCCACACCAATTTCCCCATCAAGCCAAAACTTTCTTCCTTCATTACAGACTCTGAAATCCAAGCTGAATTTTCTCACCATGATCCGGGTGTTGCCCGGATAAACAATGGCAGCTTTGGTTGCTCCCCCGCTTCTGTTATCTCTGAATTGCAACAATGGCAACTCAAATGGCTGCGCCAGCCGGACTATTTCTTATTCAATGAGCTCCACAAGGGGATACTCAAATCAAGAAACACAGTTAAAGAACTTATCAATGCACAGGATGTTGATGAAATTTCCATTGTAGATAATGCCACCACAGCAGTAGCCATAGTCTTGCAGCAGATGCAGTGGGCCTTCTCTGAAGGCAAATTCAAGAAAGGGGATGCTGTCATCATACTGCAGTGTGCTTATGGCGCAGTGAAGAACTCGATCAAGGCCTATTTTTCGTGTGCTGGCGGGTATGTTATTGAAGTTCCATTTCAATTTCCAGTGAATTACAGTGAAGAAATTATAAGTGAATTTCGGATGGCTTTGGTGAAGGAAAAGGCTAGTGGTAGAAGAGTCAGATTAGCGATGATTGATCATGTTACTTCCATGCCATATGTTGTACTTCCAGTTAAGAAATTGGTTAAAGTTTGCAGGGAAGAAGGTGTTGATCTAGTTTTCATAGATGGGGCTCATGGTGTTGGGTGTGTAGATGTTGACATGCAAGAAATTGGAGCAGATTTTTACACTAGTAATCTGCACAAGTGGTTCTTCTCCCCTGCTTCGGTTGCATTTTTATATTGTAGGAAGTCAGTCACACATTTAGAATTGCATCATCTTATGGTGTCTCATGACTATGGGGGTTGGCTATTGAAAGTAGTTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 map00270
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

334

Amino Acids

38.12

Weight (kDa)

8.7

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 95 - 312 3.1e-20 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 644
AciI CCGC 2 cut(s) 279, 588
AclWI GGATC 1 cut(s) 227
AcsI RAATTY 5 cut(s) 99, 218, 423, 500, 650
AcuI CTGAAG 1 cut(s) 513
AfaI GTAC 2 cut(s) 32, 741
AfiI CCNNNNNNNGG 2 cut(s) 235, 901
AgeI ACCGGT 1 cut(s) 27
AgsI TTSAA 7 cut(s) 79, 105, 349, 505, 602, 614, 991
AhlI ACTAGT 1 cut(s) 866
AjuI GAANNNNNNNTTGG 2 cut(s) 169, 201
AluBI AGCT 3 cut(s) 215, 264, 355
AluI AGCT 3 cut(s) 215, 264, 355
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 1 cut(s) 969
AlwI GGATC 1 cut(s) 227
AlwNI CAGNNNCTG 1 cut(s) 203
AoxI GGCC 2 cut(s) 483, 567
ApeKI GCWGC 3 cut(s) 261, 322, 469
ApoI RAATTY 5 cut(s) 99, 218, 423, 500, 650
AsiGI ACCGGT 1 cut(s) 27
AspLEI GCGC 2 cut(s) 327, 548
AspS9I GGNCC 1 cut(s) 483
AsuC2I CCSGG 2 cut(s) 237, 247
AsuHPI GGTGA 3 cut(s) 50, 218, 679
AsuII TTCGAA 1 cut(s) 97
BanII GRGCYC 2 cut(s) 357, 811
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 3 cut(s) 273, 309, 481
BccI CCATC 3 cut(s) 176, 652, 797
BciVI GTATCC 1 cut(s) 360
BclI TGATCA 1 cut(s) 712
BcnI CCSGG 2 cut(s) 237, 247
BcoDI GTCTC 1 cut(s) 969
BcuI ACTAGT 1 cut(s) 866
BfaI CTAG 3 cut(s) 681, 791, 867
BfmI CTRYAG 1 cut(s) 530
BfuI GTATCC 1 cut(s) 360
BisI GCNGC 3 cut(s) 262, 323, 470
BlsI GCNGC 3 cut(s) 263, 324, 471
Bme1390I CCNGG 2 cut(s) 237, 247
BmgT120I GGNCC 1 cut(s) 483
BmrFI CCNGG 2 cut(s) 237, 247
BmsI GCATC 4 cut(s) 119, 465, 505, 958
Bpu14I TTCGAA 1 cut(s) 97
BpuMI CCSGG 2 cut(s) 237, 247
BsaWI WCCGGW 1 cut(s) 27
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 901
Bse118I RCCGGY 1 cut(s) 27
Bse1I ACTGG 2 cut(s) 620, 746
BseGI GGATG 3 cut(s) 418, 520, 663
BseLI CCNNNNNNNGG 2 cut(s) 235, 901
BseNI ACTGG 2 cut(s) 620, 746
BseXI GCAGC 3 cut(s) 273, 309, 481
BsgI GTGCAG 1 cut(s) 860
BshFI GGCC 2 cut(s) 485, 569
BshTI ACCGGT 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 357
BsiSI CCGG 4 cut(s) 28, 236, 247, 332
BslI CCNNNNNNNGG 2 cut(s) 235, 901
BsmAI GTCTC 1 cut(s) 969
BsnI GGCC 2 cut(s) 485, 569
Bsp119I TTCGAA 1 cut(s) 97
Bsp1286I GDGCHC 2 cut(s) 357, 811
Bsp143I GATC 4 cut(s) 232, 561, 712, 787
BspACI CCGC 2 cut(s) 279, 588
BspANI GGCC 2 cut(s) 485, 569
BspHI TCATGA 1 cut(s) 967
BspMAI CTGCAG 1 cut(s) 534
BspPI GGATC 1 cut(s) 227
BspT104I TTCGAA 1 cut(s) 97
BsrFI RCCGGY 1 cut(s) 27
BsrI ACTGG 2 cut(s) 620, 746
BssAI RCCGGY 1 cut(s) 27
BssMI GATC 4 cut(s) 232, 561, 712, 787
Bst4CI ACNGT 2 cut(s) 388, 632
Bst6I CTCTTC 1 cut(s) 685
BstAPI GCANNNNNTGC 1 cut(s) 475
BstBI TTCGAA 1 cut(s) 97
BstC8I GCNNGC 2 cut(s) 329, 586
BstF5I GGATG 3 cut(s) 418, 520, 663
BstHHI GCGC 2 cut(s) 327, 548
BstKTI GATC 4 cut(s) 235, 564, 715, 790
BstMAI GTCTC 1 cut(s) 969
BstMBI GATC 4 cut(s) 232, 561, 712, 787
BstMWI GCNNNNNNNGC 7 cut(s) 270, 307, 328, 449, 475, 545, 905
BstNSI RCATGY 1 cut(s) 841
BstSCI CCNGG 2 cut(s) 235, 245
BstSFI CTRYAG 1 cut(s) 530
BstV1I GCAGC 3 cut(s) 273, 309, 481
BsuI GTATCC 1 cut(s) 360
BsuRI GGCC 2 cut(s) 485, 569
BtgZI GCGATG 1 cut(s) 719
BtsCI GGATG 3 cut(s) 418, 520, 663
BtsI GCAGTG 3 cut(s) 485, 539, 555
BtsIMutI CAGTG 5 cut(s) 485, 539, 555, 627, 637
Cac8I GCNNGC 2 cut(s) 329, 586
CaiI CAGNNNCTG 1 cut(s) 203
CciI TCATGA 1 cut(s) 967
CfoI GCGC 2 cut(s) 327, 548
Cfr10I RCCGGY 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 483
Csp6I GTAC 2 cut(s) 31, 740
CspAI ACCGGT 1 cut(s) 27
CviAII CATG 7 cut(s) 19, 230, 716, 727, 812, 838, 968
CviQI GTAC 2 cut(s) 31, 740
DpnI GATC 4 cut(s) 234, 563, 714, 789
DpnII GATC 4 cut(s) 232, 561, 712, 787
Eam1104I CTCTTC 1 cut(s) 685
EarI CTCTTC 1 cut(s) 685
Ecl136II GAGCTC 1 cut(s) 355
Eco147I AGGCCT 1 cut(s) 569
Eco24I GRGCYC 2 cut(s) 357, 811
Eco53kI GAGCTC 1 cut(s) 355
Eco57I CTGAAG 1 cut(s) 513
EcoICRI GAGCTC 1 cut(s) 355
EcoT38I GRGCYC 2 cut(s) 357, 811
FaeI CATG 7 cut(s) 22, 233, 719, 730, 815, 841, 971
FalI AAGNNNNNCTT 2 cut(s) 872, 904
FatI CATG 7 cut(s) 18, 229, 715, 726, 811, 837, 967
FauI CCCGC 2 cut(s) 286, 581
FauNDI CATATG 1 cut(s) 733
FbaI TGATCA 1 cut(s) 712
Fnu4HI GCNGC 3 cut(s) 262, 323, 470
FokI GGATG 3 cut(s) 425, 527, 670
FriOI GRGCYC 2 cut(s) 357, 811
Fsp4HI GCNGC 3 cut(s) 262, 323, 470
FspBI CTAG 3 cut(s) 681, 791, 867
GlaI GCGC 2 cut(s) 326, 547
GluI GCNGC 3 cut(s) 262, 323, 470
HaeIII GGCC 2 cut(s) 485, 569
HapII CCGG 4 cut(s) 28, 236, 247, 332
HhaI GCGC 2 cut(s) 327, 548
Hin1II CATG 7 cut(s) 22, 233, 719, 730, 815, 841, 971
Hin6I GCGC 2 cut(s) 325, 546
HinP1I GCGC 2 cut(s) 325, 546
HincII GTYRAC 1 cut(s) 835
HindII GTYRAC 1 cut(s) 835
HinfI GANTC 3 cut(s) 72, 200, 693
HpaII CCGG 4 cut(s) 28, 236, 247, 332
HphI GGTGA 3 cut(s) 50, 218, 679
Hpy166II GTNNAC 1 cut(s) 835
Hpy188I TCNGA 6 cut(s) 71, 205, 295, 493, 657, 698
Hpy188III TCNNGA 4 cut(s) 76, 378, 505, 968
Hpy8I GTNNAC 1 cut(s) 835
HpyAV CCTTC 5 cut(s) 199, 488, 496, 664, 773
HpyCH4III ACNGT 2 cut(s) 388, 632
HpyF10VI GCNNNNNNNGC 7 cut(s) 270, 307, 328, 449, 475, 545, 905
Hsp92II CATG 7 cut(s) 22, 233, 719, 730, 815, 841, 971
HspAI GCGC 2 cut(s) 325, 546
Ksp22I TGATCA 1 cut(s) 712
Kzo9I GATC 4 cut(s) 232, 561, 712, 787
LmnI GCTCC 3 cut(s) 278, 360, 851
Lsp1109I GCAGC 3 cut(s) 273, 309, 481
LweI GCATC 4 cut(s) 119, 465, 505, 958
MaeI CTAG 3 cut(s) 681, 791, 867
MaeIII GTNAC 3 cut(s) 56, 718, 931
MalI GATC 4 cut(s) 234, 563, 714, 789
MboI GATC 4 cut(s) 232, 561, 712, 787
MboII GAAGA 6 cut(s) 177, 565, 647, 702, 788, 880
MhlI GDGCHC 2 cut(s) 357, 811
MlyI GAGTC 2 cut(s) 194, 702
MmeI TCCRAC 1 cut(s) 979
MnlI CCTC 1 cut(s) 51
MseI TTAA 4 cut(s) 138, 390, 750, 762
MslI CAYNNNNRTG 1 cut(s) 972
MspI CCGG 4 cut(s) 28, 236, 247, 332
MspR9I CCNGG 2 cut(s) 237, 247
MwoI GCNNNNNNNGC 7 cut(s) 270, 307, 328, 449, 475, 545, 905
NciI CCSGG 2 cut(s) 237, 247
NdeI CATATG 1 cut(s) 733
NdeII GATC 4 cut(s) 232, 561, 712, 787
NlaIII CATG 7 cut(s) 22, 233, 719, 730, 815, 841, 971
NmuCI GTSAC 2 cut(s) 56, 931
NspI RCATGY 1 cut(s) 841
NspV TTCGAA 1 cut(s) 97
PagI TCATGA 1 cut(s) 967
PceI AGGCCT 1 cut(s) 569
PfeI GAWTC 1 cut(s) 72
PinAI ACCGGT 1 cut(s) 27
PkrI GCNGC 3 cut(s) 263, 324, 471
PleI GAGTC 2 cut(s) 194, 701
PpsI GAGTC 2 cut(s) 194, 701
PsiI TTATAA 1 cut(s) 644
Psp124BI GAGCTC 1 cut(s) 357
PspPI GGNCC 1 cut(s) 483
PstI CTGCAG 1 cut(s) 534
PstNI CAGNNNCTG 1 cut(s) 203
RsaI GTAC 2 cut(s) 32, 741
RsaNI GTAC 2 cut(s) 31, 740
RseI CAYNNNNRTG 1 cut(s) 972
SacI GAGCTC 1 cut(s) 357
SaqAI TTAA 4 cut(s) 138, 390, 750, 762
SatI GCNGC 3 cut(s) 262, 323, 470
Sau3AI GATC 4 cut(s) 232, 561, 712, 787
Sau96I GGNCC 1 cut(s) 483
SchI GAGTC 2 cut(s) 194, 702
ScrFI CCNGG 2 cut(s) 237, 247
SduI GDGCHC 2 cut(s) 357, 811
SetI ASST 5 cut(s) 138, 217, 266, 357, 784
SfaNI GCATC 4 cut(s) 119, 465, 505, 958
SfcI CTRYAG 1 cut(s) 530
SfuI TTCGAA 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 972
SpeI ACTAGT 1 cut(s) 866
SseBI AGGCCT 1 cut(s) 569
SsiI CCGC 2 cut(s) 279, 588
SspMI CTAG 3 cut(s) 681, 791, 867
SstI GAGCTC 1 cut(s) 357
StuI AGGCCT 1 cut(s) 569
StyD4I CCNGG 2 cut(s) 235, 245
TaaI ACNGT 2 cut(s) 388, 632
TaqI TCGA 2 cut(s) 97, 560
TatI WGTACW 1 cut(s) 739
TfiI GAWTC 1 cut(s) 72
Tru1I TTAA 4 cut(s) 138, 390, 750, 762
Tru9I TTAA 4 cut(s) 138, 390, 750, 762
TscAI CASTG 5 cut(s) 485, 539, 555, 627, 637
TseFI GTSAC 2 cut(s) 56, 931
TseI GCWGC 3 cut(s) 261, 322, 469
Tsp45I GTSAC 2 cut(s) 56, 931
TspDTI ATGAA 4 cut(s) 81, 181, 435, 787
TspRI CASTG 5 cut(s) 485, 539, 555, 627, 637
XapI RAATTY 5 cut(s) 99, 218, 423, 500, 650
XceI RCATGY 1 cut(s) 841
XspI CTAG 3 cut(s) 681, 791, 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.