Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000091.1

Orthogroup ID

OG0002899

Physical Location & Seq

Genomic Coordinates Reverse (-)

14457 .. 15874

Gene Structure 1418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000091.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

atgttctaccggtactatgttcctcatctactacttcgtcaccagaatatccgaatcttgaagcccaaactttcatttcgaatttcaagggcatcatcttaccattattaccacaacctgaaccctactgatacccacaccaatttccccatcaagccaaaactttcttccttcattacagactctgaaatccaagctgaattttctcaccatgatccgggtgttgcccggataaacaatggcagctttggttgctcccccgcttctgttatctctgaattgcaacaatggcaactcaaatggctgcgccagccggactatttcttattcaatgagctccacaaggggatactcaaatcaagaaacacagttcaagaacttatcaacgcacaggatgttgatgaaatttccattgtagataatgccaccacagcagtagccatagacttgcagctgatgcagtgggccttctctgaaggcaaattcaagaaaggggatgctgtcatcatactgcagtgtgcttatggcgcagtgaagaactcgatcaaggcctatttttcgtgtgctggcgggtatgttattgaagttccatttcaatttccagtgaattacactgaagaaattataagtgaatttcggatggctttggtgaaggaaaaggctagtggtagaagagtcagattagcgatgattgatcatgttacttccatgccatatgctgtacttccagttaagaaattggttaaagtttgcagggaagaaggtgttgatctagttttcatagatggggctcatggtgttgggtgtgtagatgttgacatgcaagaaattggagcagatttttacactagtaatctgcacaagtggttcttctcccctgcttcggttgcatttttatattgtaggaagtcagtcacacatttagaattgcatcatcctatggtgtctcatgactatggggttgtggagttcacaaataggtttgaaggaggaattgagggaatcaaaaggaggaatcatgatgctgttgttgtgatgggtaagatgttggcaaaggcttggggaaccaatcttgggtctccgccagatatgtgtgcaagcatgatcatggtgggaataccggcttgtttggaggtttcaagtgatgatgatgcttttaagttaaggacacatttaagggagaaatttggtgttgaagtccacatatattaccatatgccaaaacatgaagaggtggcaacaacaacagggtatggtcgagtttctcatcaagtctacaacaaagttgatgactattataagttcagagatgcaattaatcagcttgtttgtgatgggttcacctgtgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

450

Amino Acids

51.14

Weight (kDa)

7.06

Isoelectric Point (pI)

39.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62130 AT3G62130
fragaria_vesca	FvH4_4g04240 FvH4_6g08442 FvH4_6g08442 FvH4_6g08590 FvH4_6g34050 FvH4_7g09780
malus_domestica	MD12G1200200.v1.1
prunus_persica	Prupe.6G305000_v2.0.a1 Prupe.6G305100_v2.0.a1 Prupe.6G305200_v2.0.a1 Prupe.6G305300_v2.0.a1 Prupe.6G305300_v2.0.a1
pyrus_communis	pycom12g18680
rosa_chinensis	RchiOBHm_Chr2g0123491 RchiOBHm_Chr2g0123501 RchiOBHm_Chr2g0123511 RchiOBHm_Chr3g0458441
rosa_laevigata	RLG00000015569 RLG00000015570 RLG00000025157
rosa_multiflora	Rmu_sc0013809.1_g000004 Rmu_sc0017098.1_g000006 Rmu_sc0017098.1_g000007 Rmu_ssc0000091.1_g000003
rosa_rugosa	Rorug03G0028400 Rorug03G0028700
rosa_samantha	Rh2AG304800 Rh2BG312900 Rh2BG313000 Rh2CG291300 Rh2DG328800 Rh3BG090600 Rh3DG091400
rosa_wichuraiana	Rw0G018550 Rw2G024430 Rw3G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	626, 1299
AccI	GTMKAC	1 cut(s)	1275
AciI	CCGC	3 cut(s)	261, 570, 1082
AclWI	GGATC	1 cut(s)	209
AcsI	RAATTY	6 cut(s)	81, 200, 405, 482, 632, 1184
AcuI	CTGAAG	2 cut(s)	495, 636
AfaI	GTAC	2 cut(s)	14, 723
AfiI	CCNNNNNNNGG	3 cut(s)	217, 883, 1074
AgeI	ACCGGT	1 cut(s)	9
AhlI	ACTAGT	1 cut(s)	848
AjuI	GAANNNNNNNTTGG	2 cut(s)	151, 183
AluBI	AGCT	5 cut(s)	197, 246, 337, 454, 1324
AluI	AGCT	5 cut(s)	197, 246, 337, 454, 1324
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	2 cut(s)	951, 1083
AlwI	GGATC	1 cut(s)	209
AlwNI	CAGNNNCTG	1 cut(s)	185
AoxI	GGCC	2 cut(s)	465, 549
ApeKI	GCWGC	3 cut(s)	243, 304, 451
ApoI	RAATTY	6 cut(s)	81, 200, 405, 482, 632, 1184
AseI	ATTAAT	1 cut(s)	1317
AsiGI	ACCGGT	1 cut(s)	9
AspLEI	GCGC	2 cut(s)	309, 530
AspS9I	GGNCC	1 cut(s)	465
AsuC2I	CCSGG	2 cut(s)	219, 229
AsuHPI	GGTGA	4 cut(s)	32, 200, 661, 1333
AsuII	TTCGAA	1 cut(s)	79
BanII	GRGCYC	2 cut(s)	339, 793
Bbv12I	GWGCWC	1 cut(s)	339
BbvI	GCAGC	3 cut(s)	255, 291, 463
BccI	CCATC	5 cut(s)	158, 634, 779, 1030, 1328
BciVI	GTATCC	1 cut(s)	342
BclI	TGATCA	2 cut(s)	694, 1104
BcnI	CCSGG	2 cut(s)	219, 229
BcoDI	GTCTC	2 cut(s)	951, 1083
BcuI	ACTAGT	1 cut(s)	848
BfaI	CTAG	3 cut(s)	663, 773, 849
BfmI	CTRYAG	1 cut(s)	512
BfuI	GTATCC	1 cut(s)	342
BisI	GCNGC	3 cut(s)	244, 305, 452
BlsI	GCNGC	3 cut(s)	245, 306, 453
Bme1390I	CCNGG	2 cut(s)	219, 229
BmgT120I	GGNCC	1 cut(s)	465
BmiI	GGNNCC	1 cut(s)	1066
BmrFI	CCNGG	2 cut(s)	219, 229
BmsI	GCATC	7 cut(s)	101, 447, 487, 940, 1012, 1141, 1300
Bpu14I	TTCGAA	1 cut(s)	79
BpuMI	CCSGG	2 cut(s)	219, 229
BsaI	GGTCTC	1 cut(s)	1083
BsaWI	WCCGGW	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	3 cut(s)	217, 883, 1074
Bse118I	RCCGGY	2 cut(s)	9, 1120
Bse1I	ACTGG	2 cut(s)	602, 728
BseGI	GGATG	4 cut(s)	400, 502, 645, 934
BseLI	CCNNNNNNNGG	3 cut(s)	217, 883, 1074
BseNI	ACTGG	2 cut(s)	602, 728
BseXI	GCAGC	3 cut(s)	255, 291, 463
BsgI	GTGCAG	1 cut(s)	842
BshFI	GGCC	2 cut(s)	467, 551
BshTI	ACCGGT	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	339
BsiSI	CCGG	5 cut(s)	10, 218, 229, 314, 1121
BslI	CCNNNNNNNGG	3 cut(s)	217, 883, 1074
BsmAI	GTCTC	2 cut(s)	951, 1083
BsnI	GGCC	2 cut(s)	467, 551
Bso31I	GGTCTC	1 cut(s)	1083
Bsp119I	TTCGAA	1 cut(s)	79
Bsp1286I	GDGCHC	2 cut(s)	339, 793
Bsp143I	GATC	5 cut(s)	214, 543, 694, 769, 1104
BspACI	CCGC	3 cut(s)	261, 570, 1082
BspANI	GGCC	2 cut(s)	467, 551
BspHI	TCATGA	2 cut(s)	949, 1018
BspLI	GGNNCC	1 cut(s)	1066
BspMAI	CTGCAG	1 cut(s)	516
BspPI	GGATC	1 cut(s)	209
BspT104I	TTCGAA	1 cut(s)	79
BspTNI	GGTCTC	1 cut(s)	1083
BsrFI	RCCGGY	2 cut(s)	9, 1120
BsrI	ACTGG	2 cut(s)	602, 728
BssAI	RCCGGY	2 cut(s)	9, 1120
BssMI	GATC	5 cut(s)	214, 543, 694, 769, 1104
Bst4CI	ACNGT	1 cut(s)	370
Bst6I	CTCTTC	2 cut(s)	667, 1224
BstAPI	GCANNNNNTGC	1 cut(s)	457
BstBI	TTCGAA	1 cut(s)	79
BstC8I	GCNNGC	3 cut(s)	311, 568, 1099
BstF5I	GGATG	4 cut(s)	400, 502, 645, 934
BstHHI	GCGC	2 cut(s)	309, 530
BstKTI	GATC	5 cut(s)	217, 546, 697, 772, 1107
BstMAI	GTCTC	2 cut(s)	951, 1083
BstMBI	GATC	5 cut(s)	214, 543, 694, 769, 1104
BstMWI	GCNNNNNNNGC	7 cut(s)	252, 289, 310, 431, 457, 527, 887
BstNSI	RCATGY	1 cut(s)	823
BstSCI	CCNGG	2 cut(s)	217, 227
BstSFI	CTRYAG	1 cut(s)	512
BstV1I	GCAGC	3 cut(s)	255, 291, 463
BsuI	GTATCC	1 cut(s)	342
BsuRI	GGCC	2 cut(s)	467, 551
BtgZI	GCGATG	1 cut(s)	701
BtsCI	GGATG	4 cut(s)	400, 502, 645, 934
BtsI	GCAGTG	3 cut(s)	467, 521, 537
BtsIMutI	CAGTG	5 cut(s)	467, 521, 537, 609, 612
Cac8I	GCNNGC	3 cut(s)	311, 568, 1099
CaiI	CAGNNNCTG	1 cut(s)	185
CciI	TCATGA	2 cut(s)	949, 1018
CfoI	GCGC	2 cut(s)	309, 530
Cfr10I	RCCGGY	2 cut(s)	9, 1120
Cfr13I	GGNCC	1 cut(s)	465
Csp6I	GTAC	2 cut(s)	13, 722
CspAI	ACCGGT	1 cut(s)	9
CviQI	GTAC	2 cut(s)	13, 722
DpnI	GATC	5 cut(s)	216, 545, 696, 771, 1106
DpnII	GATC	5 cut(s)	214, 543, 694, 769, 1104
Eam1104I	CTCTTC	2 cut(s)	667, 1224
EarI	CTCTTC	2 cut(s)	667, 1224
EciI	GGCGGA	1 cut(s)	1071
Ecl136II	GAGCTC	1 cut(s)	337
Eco147I	AGGCCT	1 cut(s)	551
Eco24I	GRGCYC	2 cut(s)	339, 793
Eco31I	GGTCTC	1 cut(s)	1083
Eco53kI	GAGCTC	1 cut(s)	337
Eco57I	CTGAAG	2 cut(s)	495, 636
EcoICRI	GAGCTC	1 cut(s)	337
EcoT38I	GRGCYC	2 cut(s)	339, 793
FalI	AAGNNNNNCTT	2 cut(s)	854, 886
FauI	CCCGC	2 cut(s)	268, 563
FauNDI	CATATG	2 cut(s)	715, 1215
FbaI	TGATCA	2 cut(s)	694, 1104
FblI	GTMKAC	1 cut(s)	1275
Fnu4HI	GCNGC	3 cut(s)	244, 305, 452
FokI	GGATG	4 cut(s)	407, 509, 652, 921
FriOI	GRGCYC	2 cut(s)	339, 793
Fsp4HI	GCNGC	3 cut(s)	244, 305, 452
FspBI	CTAG	3 cut(s)	663, 773, 849
GlaI	GCGC	2 cut(s)	308, 529
GluI	GCNGC	3 cut(s)	244, 305, 452
HaeIII	GGCC	2 cut(s)	467, 551
HapII	CCGG	5 cut(s)	10, 218, 229, 314, 1121
HhaI	GCGC	2 cut(s)	309, 530
Hin6I	GCGC	2 cut(s)	307, 528
HinP1I	GCGC	2 cut(s)	307, 528
HincII	GTYRAC	1 cut(s)	817
HindII	GTYRAC	1 cut(s)	817
HinfI	GANTC	5 cut(s)	54, 182, 675, 1002, 1015
HpaII	CCGG	5 cut(s)	10, 218, 229, 314, 1121
HphI	GGTGA	4 cut(s)	32, 200, 661, 1333
Hpy166II	GTNNAC	5 cut(s)	817, 972, 1201, 1276, 1341
Hpy188I	TCNGA	7 cut(s)	53, 187, 277, 475, 639, 680, 1307
Hpy188III	TCNNGA	6 cut(s)	58, 360, 374, 487, 950, 1019
Hpy8I	GTNNAC	5 cut(s)	817, 972, 1201, 1276, 1341
HpyAV	CCTTC	6 cut(s)	181, 470, 478, 646, 755, 980
HpyCH4III	ACNGT	1 cut(s)	370
HpyF10VI	GCNNNNNNNGC	7 cut(s)	252, 289, 310, 431, 457, 527, 887
HspAI	GCGC	2 cut(s)	307, 528
Ksp22I	TGATCA	2 cut(s)	694, 1104
Kzo9I	GATC	5 cut(s)	214, 543, 694, 769, 1104
LmnI	GCTCC	3 cut(s)	260, 342, 833
Lsp1109I	GCAGC	3 cut(s)	255, 291, 463
LweI	GCATC	7 cut(s)	101, 447, 487, 940, 1012, 1141, 1300
MaeI	CTAG	3 cut(s)	663, 773, 849
MaeIII	GTNAC	3 cut(s)	38, 700, 913
MalI	GATC	5 cut(s)	216, 545, 696, 771, 1106
MboI	GATC	5 cut(s)	214, 543, 694, 769, 1104
MboII	GAAGA	7 cut(s)	159, 547, 629, 684, 770, 862, 1241
MhlI	GDGCHC	2 cut(s)	339, 793
MlyI	GAGTC	2 cut(s)	176, 684
MnlI	CCTC	6 cut(s)	33, 983, 991, 1005, 1126, 1225
MseI	TTAA	6 cut(s)	732, 744, 1158, 1163, 1175, 1317
MslI	CAYNNNNRTG	2 cut(s)	954, 1106
MspA1I	CMGCKG	1 cut(s)	454
MspI	CCGG	5 cut(s)	10, 218, 229, 314, 1121
MspR9I	CCNGG	2 cut(s)	219, 229
MwoI	GCNNNNNNNGC	7 cut(s)	252, 289, 310, 431, 457, 527, 887
NciI	CCSGG	2 cut(s)	219, 229
NdeI	CATATG	2 cut(s)	715, 1215
NdeII	GATC	5 cut(s)	214, 543, 694, 769, 1104
NlaIV	GGNNCC	1 cut(s)	1066
NmuCI	GTSAC	2 cut(s)	38, 913
NspI	RCATGY	1 cut(s)	823
NspV	TTCGAA	1 cut(s)	79
PagI	TCATGA	2 cut(s)	949, 1018
PceI	AGGCCT	1 cut(s)	551
PfeI	GAWTC	3 cut(s)	54, 1002, 1015
PinAI	ACCGGT	1 cut(s)	9
PkrI	GCNGC	3 cut(s)	245, 306, 453
PleI	GAGTC	2 cut(s)	176, 683
PpsI	GAGTC	2 cut(s)	176, 683
PshBI	ATTAAT	1 cut(s)	1317
PsiI	TTATAA	2 cut(s)	626, 1299
Psp124BI	GAGCTC	1 cut(s)	339
PspN4I	GGNNCC	1 cut(s)	1066
PspPI	GGNCC	1 cut(s)	465
PstI	CTGCAG	1 cut(s)	516
PstNI	CAGNNNCTG	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	454
RsaI	GTAC	2 cut(s)	14, 723
RsaNI	GTAC	2 cut(s)	13, 722
RseI	CAYNNNNRTG	2 cut(s)	954, 1106
SacI	GAGCTC	1 cut(s)	339
SaqAI	TTAA	6 cut(s)	732, 744, 1158, 1163, 1175, 1317
SatI	GCNGC	3 cut(s)	244, 305, 452
Sau3AI	GATC	5 cut(s)	214, 543, 694, 769, 1104
Sau96I	GGNCC	1 cut(s)	465
SchI	GAGTC	2 cut(s)	176, 684
ScrFI	CCNGG	2 cut(s)	219, 229
SduI	GDGCHC	2 cut(s)	339, 793
SfaNI	GCATC	7 cut(s)	101, 447, 487, 940, 1012, 1141, 1300
SfcI	CTRYAG	1 cut(s)	512
SfuI	TTCGAA	1 cut(s)	79
SmiMI	CAYNNNNRTG	2 cut(s)	954, 1106
SpeI	ACTAGT	1 cut(s)	848
SseBI	AGGCCT	1 cut(s)	551
SsiI	CCGC	3 cut(s)	261, 570, 1082
SspMI	CTAG	3 cut(s)	663, 773, 849
SstI	GAGCTC	1 cut(s)	339
StuI	AGGCCT	1 cut(s)	551
StyD4I	CCNGG	2 cut(s)	217, 227
TaaI	ACNGT	1 cut(s)	370
TaqI	TCGA	3 cut(s)	79, 542, 1258
TatI	WGTACW	1 cut(s)	721
TfiI	GAWTC	3 cut(s)	54, 1002, 1015
Tru1I	TTAA	6 cut(s)	732, 744, 1158, 1163, 1175, 1317
Tru9I	TTAA	6 cut(s)	732, 744, 1158, 1163, 1175, 1317
TscAI	CASTG	5 cut(s)	467, 521, 537, 609, 619
TseFI	GTSAC	2 cut(s)	38, 913
TseI	GCWGC	3 cut(s)	243, 304, 451
Tsp45I	GTSAC	2 cut(s)	38, 913
TspDTI	ATGAA	5 cut(s)	63, 163, 417, 769, 1242
TspRI	CASTG	5 cut(s)	467, 521, 537, 609, 619
VspI	ATTAAT	1 cut(s)	1317
XapI	RAATTY	6 cut(s)	81, 200, 405, 482, 632, 1184
XceI	RCATGY	1 cut(s)	823
XmiI	GTMKAC	1 cut(s)	1275
XspI	CTAG	3 cut(s)	663, 773, 849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.