Rw2G024430

Aminotransferase class-V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0002899
Physical Location & Seq
Reverse (-)
36074142 .. 36075803
1662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G024430.1

Sequence Viewer

Length: 1353 bp
ATGGCTTGTAGGATAATCATGTTCTACCGGTACTATGTTCCTCATCTACTACTTCGTCACCAGAATATCCGAATCTTGAAGCCCAAACTTTCATTTCGAATTTCAAGGGCATCATCTTACCATTATTACCACAACCTTAACCCTACTGATACCCACACCAATTTCCCCATCAAGCCAAAACTTTCTTCCTTCATTACAGACTCTGAAATCCAAGCTGAATTTTCTCACCATGATCCGGGTGTTGCCCGGATAAACAATGGCAGCTTTGGTTGCTCCCCCGCTTCTGTTATCTCTGAATTGCAACAATGGCAACTCAAATGGCTGCGCCAGCCGGACTATTTCTTATTCAATGAGCTCCACAAGGGGATACTCAAATCAAGAAACACACAGATGCAGTGGGCCTTCTCTGAAGGCAAATTCAAGAAAGGGGATGCTGTCATCATACTGCAGTGTGCTTATGGCGCAGTGAAGAACTCGATCAAGGCCTATTTTTCGTGTGCTGGCGGGTATGTTATTGGAGTTCCATTTCAATTTCCAGTGAATTACAGTGAAGAAATTATAAGTGAATTTCGGATGGCTTTGGTGAAGGAAAAGGCTAGTGGTAGAAGAGTCAGATTAGCGATGATTGATCATGTTACATCCATGCCATATGTTGTACTTCCAGTTAAGGAATTGGTTAAAGTTTGCAGGGAAGAAGGTGTTGATCTAGTTTTCATAGATGGGGCTCATGGTGTTGGGTGTGTAGATGTTGACATGCAAGAAATTGGAGCAGATTTTTACACTAGTAATTTGCACAAGTGGTTCTTCTCCCCTGCTTCGGTTGCATTTTTATATTGTAGGAAGTCAGTCACACATTTAGAATTGCATCATCCTATGGTGTCTCATGACTATGTTAAAGGGTTGGCTATTGAAAGTAGTTGGATAGGGACTAGGGACTATAGTCCATCTTTAGTGGTTCCTTCAGTTGCTTGGGGAACCAATCTTGGGTCTCCGCCAGATATGTGTGCAAGCATGATCATGGTGGGAATACCGGCTTGTTTGGAGGTTTCAAGTGATGATGATGCTTTGAAGTTAAGGACACATTTAAGGGAGAGATTTGGTGTTGAAGTCCACATATATTACCAGATGCCAAAACATGAAGAGGTGGCAACAACAACAGGGTATGGTCGAGTTTCTCATCAAGTCTACAACAAAGTTGATGACTATTATAAGTTCAGAGATGCAATTAATCAGCTTGTTTGTGATGGGTTCACCTGTCCTGAAGAAGTCCATATCATGAATAACAGGAGCCATTACCTCTCTGTCTCCTGCATACTGCTAGTGGCAATGGTTTCGGTACCATTAATATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 map00270
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

450

Amino Acids

51.16

Weight (kDa)

7.93

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 198 - 284 1e-11 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 560, 1209
Acc65I GGTACC 1 cut(s) 1336
AccB1I GGYRCC 1 cut(s) 1336
AccI GTMKAC 1 cut(s) 1185
AciI CCGC 3 cut(s) 279, 504, 992
AclWI GGATC 1 cut(s) 227
AcsI RAATTY 4 cut(s) 99, 218, 416, 566
AcuI CTGAAG 3 cut(s) 429, 945, 1281
AfaI GTAC 3 cut(s) 32, 657, 1338
AfiI CCNNNNNNNGG 3 cut(s) 235, 817, 984
AgeI ACCGGT 1 cut(s) 27
AgsI TTSAA 9 cut(s) 79, 105, 349, 421, 530, 911, 1050, 1069, 1106
AhlI ACTAGT 1 cut(s) 782
AjuI GAANNNNNNNTTGG 2 cut(s) 169, 201
AluBI AGCT 4 cut(s) 215, 264, 355, 1234
AluI AGCT 4 cut(s) 215, 264, 355, 1234
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 3 cut(s) 885, 993, 1309
AlwI GGATC 1 cut(s) 227
AlwNI CAGNNNCTG 1 cut(s) 203
AoxI GGCC 2 cut(s) 399, 483
ApeKI GCWGC 2 cut(s) 261, 322
ApoI RAATTY 4 cut(s) 99, 218, 416, 566
AseI ATTAAT 2 cut(s) 1227, 1343
AsiGI ACCGGT 1 cut(s) 27
Asp718I GGTACC 1 cut(s) 1336
AspLEI GCGC 2 cut(s) 327, 464
AspS9I GGNCC 1 cut(s) 399
AsuC2I CCSGG 2 cut(s) 237, 247
AsuHPI GGTGA 4 cut(s) 50, 218, 595, 1243
AsuII TTCGAA 1 cut(s) 97
BanI GGYRCC 1 cut(s) 1336
BanII GRGCYC 2 cut(s) 357, 727
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 2 cut(s) 273, 309
BccI CCATC 5 cut(s) 176, 568, 713, 952, 1238
BcgI CGANNNNNNTGC 2 cut(s) 1314, 1348
BciVI GTATCC 1 cut(s) 360
BclI TGATCA 2 cut(s) 628, 1014
BcnI CCSGG 2 cut(s) 237, 247
BcoDI GTCTC 3 cut(s) 885, 993, 1309
BcuI ACTAGT 1 cut(s) 782
BfaI CTAG 6 cut(s) 597, 707, 783, 930, 1319, 1351
BfmI CTRYAG 2 cut(s) 446, 937
BfuI GTATCC 1 cut(s) 360
BisI GCNGC 2 cut(s) 262, 323
BlsI GCNGC 2 cut(s) 263, 324
Bme1390I CCNGG 2 cut(s) 237, 247
BmgT120I GGNCC 1 cut(s) 399
BmiI GGNNCC 4 cut(s) 957, 976, 1289, 1338
BmrFI CCNGG 2 cut(s) 237, 247
BmsI GCATC 7 cut(s) 119, 381, 421, 874, 1051, 1116, 1210
BoxI GACNNNNGTC 1 cut(s) 939
Bpu14I TTCGAA 1 cut(s) 97
BpuMI CCSGG 2 cut(s) 237, 247
BsaI GGTCTC 1 cut(s) 993
BsaWI WCCGGW 1 cut(s) 27
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 817, 984
Bse118I RCCGGY 2 cut(s) 27, 1030
Bse1I ACTGG 2 cut(s) 536, 662
Bse3DI GCAATG 1 cut(s) 1332
BseGI GGATG 4 cut(s) 436, 579, 638, 868
BseLI CCNNNNNNNGG 3 cut(s) 235, 817, 984
BseMI GCAATG 1 cut(s) 1332
BseNI ACTGG 2 cut(s) 536, 662
BseXI GCAGC 2 cut(s) 273, 309
BshFI GGCC 2 cut(s) 401, 485
BshNI GGYRCC 1 cut(s) 1336
BshTI ACCGGT 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 357
BsiSI CCGG 5 cut(s) 28, 236, 247, 332, 1031
BslFI GGGAC 2 cut(s) 940, 947
BslI CCNNNNNNNGG 3 cut(s) 235, 817, 984
BsmAI GTCTC 3 cut(s) 885, 993, 1309
BsmFI GGGAC 2 cut(s) 940, 947
BsnI GGCC 2 cut(s) 401, 485
Bso31I GGTCTC 1 cut(s) 993
Bsp119I TTCGAA 1 cut(s) 97
Bsp1286I GDGCHC 2 cut(s) 357, 727
Bsp143I GATC 5 cut(s) 232, 477, 628, 703, 1014
BspACI CCGC 3 cut(s) 279, 504, 992
BspANI GGCC 2 cut(s) 401, 485
BspHI TCATGA 2 cut(s) 883, 1275
BspLI GGNNCC 4 cut(s) 957, 976, 1289, 1338
BspMAI CTGCAG 1 cut(s) 450
BspPI GGATC 1 cut(s) 227
BspT104I TTCGAA 1 cut(s) 97
BspT107I GGYRCC 1 cut(s) 1336
BspTNI GGTCTC 1 cut(s) 993
BsrDI GCAATG 1 cut(s) 1332
BsrFI RCCGGY 2 cut(s) 27, 1030
BsrI ACTGG 2 cut(s) 536, 662
BssAI RCCGGY 2 cut(s) 27, 1030
BssMI GATC 5 cut(s) 232, 477, 628, 703, 1014
Bst4CI ACNGT 1 cut(s) 548
Bst6I CTCTTC 2 cut(s) 601, 1134
BstBI TTCGAA 1 cut(s) 97
BstC8I GCNNGC 3 cut(s) 329, 502, 1009
BstF5I GGATG 4 cut(s) 436, 579, 638, 868
BstHHI GCGC 2 cut(s) 327, 464
BstKTI GATC 5 cut(s) 235, 480, 631, 706, 1017
BstMAI GTCTC 3 cut(s) 885, 993, 1309
BstMBI GATC 5 cut(s) 232, 477, 628, 703, 1014
BstMWI GCNNNNNNNGC 5 cut(s) 270, 307, 328, 461, 821
BstNSI RCATGY 1 cut(s) 757
BstPAI GACNNNNGTC 1 cut(s) 939
BstSCI CCNGG 2 cut(s) 235, 245
BstSFI CTRYAG 2 cut(s) 446, 937
BstV1I GCAGC 2 cut(s) 273, 309
BsuI GTATCC 1 cut(s) 360
BsuRI GGCC 2 cut(s) 401, 485
BtgZI GCGATG 1 cut(s) 635
BtsCI GGATG 4 cut(s) 436, 579, 638, 868
BtsI GCAGTG 3 cut(s) 401, 455, 471
BtsIMutI CAGTG 5 cut(s) 401, 455, 471, 543, 553
Cac8I GCNNGC 3 cut(s) 329, 502, 1009
CaiI CAGNNNCTG 1 cut(s) 203
CciI TCATGA 2 cut(s) 883, 1275
CfoI GCGC 2 cut(s) 327, 464
Cfr10I RCCGGY 2 cut(s) 27, 1030
Cfr13I GGNCC 1 cut(s) 399
Csp6I GTAC 3 cut(s) 31, 656, 1337
CspAI ACCGGT 1 cut(s) 27
CviQI GTAC 3 cut(s) 31, 656, 1337
DpnI GATC 5 cut(s) 234, 479, 630, 705, 1016
DpnII GATC 5 cut(s) 232, 477, 628, 703, 1014
Eam1104I CTCTTC 2 cut(s) 601, 1134
EarI CTCTTC 2 cut(s) 601, 1134
EciI GGCGGA 1 cut(s) 981
Ecl136II GAGCTC 1 cut(s) 355
Eco147I AGGCCT 1 cut(s) 485
Eco24I GRGCYC 2 cut(s) 357, 727
Eco31I GGTCTC 1 cut(s) 993
Eco53kI GAGCTC 1 cut(s) 355
Eco57I CTGAAG 3 cut(s) 429, 945, 1281
EcoICRI GAGCTC 1 cut(s) 355
EcoT38I GRGCYC 2 cut(s) 357, 727
FalI AAGNNNNNCTT 2 cut(s) 788, 820
FaqI GGGAC 2 cut(s) 940, 947
FauI CCCGC 2 cut(s) 286, 497
FauNDI CATATG 1 cut(s) 649
FbaI TGATCA 2 cut(s) 628, 1014
FblI GTMKAC 1 cut(s) 1185
Fnu4HI GCNGC 2 cut(s) 262, 323
FokI GGATG 4 cut(s) 443, 586, 625, 855
FriOI GRGCYC 2 cut(s) 357, 727
Fsp4HI GCNGC 2 cut(s) 262, 323
FspBI CTAG 6 cut(s) 597, 707, 783, 930, 1319, 1351
GlaI GCGC 2 cut(s) 326, 463
GluI GCNGC 2 cut(s) 262, 323
HaeIII GGCC 2 cut(s) 401, 485
HapII CCGG 5 cut(s) 28, 236, 247, 332, 1031
HhaI GCGC 2 cut(s) 327, 464
Hin6I GCGC 2 cut(s) 325, 462
HinP1I GCGC 2 cut(s) 325, 462
HincII GTYRAC 1 cut(s) 751
HindII GTYRAC 1 cut(s) 751
HinfI GANTC 3 cut(s) 72, 200, 609
HpaII CCGG 5 cut(s) 28, 236, 247, 332, 1031
HphI GGTGA 4 cut(s) 50, 218, 595, 1243
Hpy166II GTNNAC 4 cut(s) 751, 1111, 1186, 1251
Hpy188I TCNGA 7 cut(s) 71, 205, 295, 409, 573, 614, 1217
Hpy188III TCNNGA 6 cut(s) 76, 378, 421, 884, 1259, 1276
Hpy8I GTNNAC 4 cut(s) 751, 1111, 1186, 1251
HpyAV CCTTC 6 cut(s) 199, 404, 412, 580, 689, 969
HpyCH4III ACNGT 1 cut(s) 548
HpyF10VI GCNNNNNNNGC 5 cut(s) 270, 307, 328, 461, 821
HspAI GCGC 2 cut(s) 325, 462
KpnI GGTACC 1 cut(s) 1340
Ksp22I TGATCA 2 cut(s) 628, 1014
Kzo9I GATC 5 cut(s) 232, 477, 628, 703, 1014
LmnI GCTCC 4 cut(s) 278, 360, 767, 1287
Lsp1109I GCAGC 2 cut(s) 273, 309
LweI GCATC 7 cut(s) 119, 381, 421, 874, 1051, 1116, 1210
MaeI CTAG 6 cut(s) 597, 707, 783, 930, 1319, 1351
MaeIII GTNAC 3 cut(s) 56, 634, 847
MalI GATC 5 cut(s) 234, 479, 630, 705, 1016
MboI GATC 5 cut(s) 232, 477, 628, 703, 1014
MboII GAAGA 8 cut(s) 177, 481, 563, 618, 704, 796, 1151, 1274
MhlI GDGCHC 2 cut(s) 357, 727
MlyI GAGTC 2 cut(s) 194, 618
MmeI TCCRAC 1 cut(s) 899
MnlI CCTC 4 cut(s) 51, 1036, 1135, 1307
MseI TTAA 8 cut(s) 138, 666, 678, 894, 1073, 1085, 1227, 1343
MslI CAYNNNNRTG 3 cut(s) 389, 888, 1016
MspI CCGG 5 cut(s) 28, 236, 247, 332, 1031
MspR9I CCNGG 2 cut(s) 237, 247
MwoI GCNNNNNNNGC 5 cut(s) 270, 307, 328, 461, 821
NciI CCSGG 2 cut(s) 237, 247
NdeI CATATG 1 cut(s) 649
NdeII GATC 5 cut(s) 232, 477, 628, 703, 1014
NlaIV GGNNCC 4 cut(s) 957, 976, 1289, 1338
NmuCI GTSAC 2 cut(s) 56, 847
NspI RCATGY 1 cut(s) 757
NspV TTCGAA 1 cut(s) 97
PagI TCATGA 2 cut(s) 883, 1275
PceI AGGCCT 1 cut(s) 485
PfeI GAWTC 1 cut(s) 72
PinAI ACCGGT 1 cut(s) 27
PkrI GCNGC 2 cut(s) 263, 324
PleI GAGTC 2 cut(s) 194, 617
PpsI GAGTC 2 cut(s) 194, 617
PshAI GACNNNNGTC 1 cut(s) 939
PshBI ATTAAT 2 cut(s) 1227, 1343
PsiI TTATAA 2 cut(s) 560, 1209
Psp124BI GAGCTC 1 cut(s) 357
PspN4I GGNNCC 4 cut(s) 957, 976, 1289, 1338
PspPI GGNCC 1 cut(s) 399
PstI CTGCAG 1 cut(s) 450
PstNI CAGNNNCTG 1 cut(s) 203
RsaI GTAC 3 cut(s) 32, 657, 1338
RsaNI GTAC 3 cut(s) 31, 656, 1337
RseI CAYNNNNRTG 3 cut(s) 389, 888, 1016
SacI GAGCTC 1 cut(s) 357
SaqAI TTAA 8 cut(s) 138, 666, 678, 894, 1073, 1085, 1227, 1343
SatI GCNGC 2 cut(s) 262, 323
Sau3AI GATC 5 cut(s) 232, 477, 628, 703, 1014
Sau96I GGNCC 1 cut(s) 399
SchI GAGTC 2 cut(s) 194, 618
ScrFI CCNGG 2 cut(s) 237, 247
SduI GDGCHC 2 cut(s) 357, 727
SfaNI GCATC 7 cut(s) 119, 381, 421, 874, 1051, 1116, 1210
SfcI CTRYAG 2 cut(s) 446, 937
SfuI TTCGAA 1 cut(s) 97
SmiMI CAYNNNNRTG 3 cut(s) 389, 888, 1016
SpeI ACTAGT 1 cut(s) 782
SseBI AGGCCT 1 cut(s) 485
SsiI CCGC 3 cut(s) 279, 504, 992
SspMI CTAG 6 cut(s) 597, 707, 783, 930, 1319, 1351
SstI GAGCTC 1 cut(s) 357
StuI AGGCCT 1 cut(s) 485
StyD4I CCNGG 2 cut(s) 235, 245
TaaI ACNGT 1 cut(s) 548
TaqI TCGA 3 cut(s) 97, 476, 1168
TatI WGTACW 1 cut(s) 655
TfiI GAWTC 1 cut(s) 72
Tru1I TTAA 8 cut(s) 138, 666, 678, 894, 1073, 1085, 1227, 1343
Tru9I TTAA 8 cut(s) 138, 666, 678, 894, 1073, 1085, 1227, 1343
TscAI CASTG 5 cut(s) 401, 455, 471, 543, 553
TseFI GTSAC 2 cut(s) 56, 847
TseI GCWGC 2 cut(s) 261, 322
Tsp45I GTSAC 2 cut(s) 56, 847
TspDTI ATGAA 5 cut(s) 81, 181, 703, 1152, 1292
TspRI CASTG 5 cut(s) 401, 455, 471, 543, 553
VspI ATTAAT 2 cut(s) 1227, 1343
XapI RAATTY 4 cut(s) 99, 218, 416, 566
XceI RCATGY 1 cut(s) 757
XmiI GTMKAC 1 cut(s) 1185
XspI CTAG 6 cut(s) 597, 707, 783, 930, 1319, 1351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.