Rh2CG291300

Aminotransferase class-V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002899
Physical Location & Seq
Reverse (-)
32947126 .. 32949042
1917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG291300.1

Sequence Viewer

Length: 966 bp
ATGCAGTGGGCCTTCTCTGAAGGCAAATTCAAGAAAGGGGATGCTGTCATCATACTGCAGTGTGCTTATGGCGCAGTGAAGAACTCGATCAAGGCCTATTTTTCGTGTGCTAGCGGGTATGTTATTGAAGTTCCATTTCAATTTCCAGTGAATTACAGTGAAGAAATTATAAGTGAATTTCGGATGGCTTTGGTGAAGGAAAAGGCTAGTGGTAGAACAGTCAGATTAGCGATGATTGATCATGTTACTTCCATGCCATATGTTGTACTTCCAGTTAAGAAATTGGTTAAAGTTTGCAGGGAAGAAGGTGTTGATCTAGTTTTCATAGATGGGGCTCATGGTGTTGGGTGTGTAGATGTTGACATGCAAGAAATTGGAGCAGATTTTTACACTAATAATTTGCACAAGTGGTTCTTCTCCCCTGCTTCGGTTGCATTTTTATATTGTAGGAAGTCAGTCACACATTTAGAATTGCATCATCCTATGGTGTCTCATGACTATGGTAAAGGGTTGGCTATTGAAAGTAGTTGGATAGGGACTAGGGATTATAGTCCATCTTTAGTGATTCCTTCAGTTGTGGAGTTCACAAATAGGTTTGAAGGCGGTATTAAGGGAATCAAAACGAGGAATCATGATGCTGTTGTTGAGATGGGTAAGATGTTGGCAAAGGCTTGGGGAACCAATCTTGGGTCTCCGCCAGATATGTGTGCAAGCATGATCATGGTGGGAATATCGGCTTGTTTGGAGGTTTCAAGTGATGATGATGCTTTGAAGTTAGGGACAGATTTAAGGGAGAAATTTGGTGTTGAAGTCCACATATATTACCAGATGCCAAAACATGAAGAGGTGGCAACAACAACAGGGTATGGTCGAGTTTCTCATCAAGTCTACAACAAAGTTGATGACTATTATAAGTTCAGAGATGCAATTAATCAACTTGTTTGTGATGGGTTCACTTGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 map00270
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

321

Amino Acids

35.78

Weight (kDa)

6.13

Isoelectric Point (pI)

29.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 63 - 153 4.4e-11 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 170, 912
AccI GTMKAC 1 cut(s) 888
AciI CCGC 3 cut(s) 114, 603, 695
AcsI RAATTY 3 cut(s) 26, 176, 797
AcuI CTGAAG 2 cut(s) 39, 555
AfaI GTAC 1 cut(s) 267
AfiI CCNNNNNNNGG 2 cut(s) 427, 687
AgsI TTSAA 8 cut(s) 31, 128, 140, 521, 599, 753, 772, 809
Alw26I GTCTC 2 cut(s) 495, 696
AoxI GGCC 2 cut(s) 9, 93
ApoI RAATTY 3 cut(s) 26, 176, 797
AseI ATTAAT 1 cut(s) 930
AspLEI GCGC 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 9
AsuHPI GGTGA 1 cut(s) 205
AsuNHI GCTAGC 1 cut(s) 110
BanII GRGCYC 1 cut(s) 337
BccI CCATC 5 cut(s) 178, 323, 562, 643, 941
BclI TGATCA 2 cut(s) 238, 717
BcoDI GTCTC 2 cut(s) 495, 696
BfaI CTAG 4 cut(s) 111, 207, 317, 540
BfmI CTRYAG 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 9
BmiI GGNNCC 1 cut(s) 679
BmsI GCATC 6 cut(s) 31, 484, 625, 754, 819, 913
BmtI GCTAGC 1 cut(s) 114
BsaI GGTCTC 1 cut(s) 696
Bsc4I CCNNNNNNNGG 2 cut(s) 427, 687
Bse1I ACTGG 2 cut(s) 146, 272
BseGI GGATG 3 cut(s) 46, 189, 478
BseLI CCNNNNNNNGG 2 cut(s) 427, 687
BseNI ACTGG 2 cut(s) 146, 272
BshFI GGCC 2 cut(s) 11, 95
BslFI GGGAC 2 cut(s) 550, 793
BslI CCNNNNNNNGG 2 cut(s) 427, 687
BsmAI GTCTC 2 cut(s) 495, 696
BsmFI GGGAC 2 cut(s) 550, 793
BsnI GGCC 2 cut(s) 11, 95
Bso31I GGTCTC 1 cut(s) 696
Bsp1286I GDGCHC 1 cut(s) 337
Bsp143I GATC 4 cut(s) 87, 238, 313, 717
BspACI CCGC 3 cut(s) 114, 603, 695
BspANI GGCC 2 cut(s) 11, 95
BspHI TCATGA 2 cut(s) 493, 631
BspLI GGNNCC 1 cut(s) 679
BspMAI CTGCAG 1 cut(s) 60
BspOI GCTAGC 1 cut(s) 114
BspTNI GGTCTC 1 cut(s) 696
BsrI ACTGG 2 cut(s) 146, 272
BssMI GATC 4 cut(s) 87, 238, 313, 717
Bst4CI ACNGT 2 cut(s) 158, 220
Bst6I CTCTTC 1 cut(s) 837
BstC8I GCNNGC 2 cut(s) 112, 712
BstF5I GGATG 3 cut(s) 46, 189, 478
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 4 cut(s) 90, 241, 316, 720
BstMAI GTCTC 2 cut(s) 495, 696
BstMBI GATC 4 cut(s) 87, 238, 313, 717
BstMWI GCNNNNNNNGC 2 cut(s) 71, 431
BstNSI RCATGY 1 cut(s) 367
BstSFI CTRYAG 1 cut(s) 56
BsuRI GGCC 2 cut(s) 11, 95
BtgZI GCGATG 1 cut(s) 245
BtsCI GGATG 3 cut(s) 46, 189, 478
BtsI GCAGTG 3 cut(s) 11, 65, 81
BtsIMutI CAGTG 5 cut(s) 11, 65, 81, 153, 163
Cac8I GCNNGC 2 cut(s) 112, 712
CciI TCATGA 2 cut(s) 493, 631
CfoI GCGC 1 cut(s) 74
Cfr13I GGNCC 1 cut(s) 9
Csp6I GTAC 1 cut(s) 266
CviAII CATG 9 cut(s) 242, 253, 338, 364, 494, 632, 715, 721, 839
CviJI RGCY 8 cut(s) 11, 95, 188, 206, 335, 515, 671, 737
CviKI_1 RGCY 8 cut(s) 11, 95, 188, 206, 335, 515, 671, 737
CviQI GTAC 1 cut(s) 266
DpnI GATC 4 cut(s) 89, 240, 315, 719
DpnII GATC 4 cut(s) 87, 238, 313, 717
Eam1104I CTCTTC 1 cut(s) 837
EarI CTCTTC 1 cut(s) 837
EciI GGCGGA 1 cut(s) 684
Eco147I AGGCCT 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 337
Eco31I GGTCTC 1 cut(s) 696
Eco57I CTGAAG 2 cut(s) 39, 555
EcoT38I GRGCYC 1 cut(s) 337
FaeI CATG 9 cut(s) 245, 256, 341, 367, 497, 635, 718, 724, 842
FalI AAGNNNNNCTT 2 cut(s) 398, 430
FaqI GGGAC 2 cut(s) 550, 793
FatI CATG 9 cut(s) 241, 252, 337, 363, 493, 631, 714, 720, 838
FauI CCCGC 1 cut(s) 107
FauNDI CATATG 1 cut(s) 259
FbaI TGATCA 2 cut(s) 238, 717
FblI GTMKAC 1 cut(s) 888
FokI GGATG 3 cut(s) 53, 196, 465
FriOI GRGCYC 1 cut(s) 337
FspBI CTAG 4 cut(s) 111, 207, 317, 540
GlaI GCGC 1 cut(s) 73
HaeIII GGCC 2 cut(s) 11, 95
HhaI GCGC 1 cut(s) 74
Hin1II CATG 9 cut(s) 245, 256, 341, 367, 497, 635, 718, 724, 842
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HinfI GANTC 3 cut(s) 565, 615, 628
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 5 cut(s) 361, 585, 814, 889, 954
Hpy188I TCNGA 4 cut(s) 19, 183, 224, 920
Hpy188III TCNNGA 3 cut(s) 31, 494, 632
Hpy8I GTNNAC 5 cut(s) 361, 585, 814, 889, 954
HpyAV CCTTC 6 cut(s) 14, 22, 190, 299, 579, 593
HpyCH4III ACNGT 2 cut(s) 158, 220
HpyCH4V TGCA 9 cut(s) 4, 58, 297, 367, 403, 434, 475, 710, 926
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 431
Hsp92II CATG 9 cut(s) 245, 256, 341, 367, 497, 635, 718, 724, 842
HspAI GCGC 1 cut(s) 72
Ksp22I TGATCA 2 cut(s) 238, 717
Kzo9I GATC 4 cut(s) 87, 238, 313, 717
LmnI GCTCC 1 cut(s) 377
LpnPI CCDG 7 cut(s) 159, 283, 285, 435, 711, 839, 846
LweI GCATC 6 cut(s) 31, 484, 625, 754, 819, 913
MaeI CTAG 4 cut(s) 111, 207, 317, 540
MaeIII GTNAC 2 cut(s) 244, 457
MalI GATC 4 cut(s) 89, 240, 315, 719
MboI GATC 4 cut(s) 87, 238, 313, 717
MboII GAAGA 5 cut(s) 91, 173, 314, 406, 854
MhlI GDGCHC 1 cut(s) 337
MmeI TCCRAC 1 cut(s) 509
MnlI CCTC 3 cut(s) 618, 739, 838
MseI TTAA 5 cut(s) 276, 288, 609, 788, 930
MslI CAYNNNNRTG 2 cut(s) 498, 719
MwoI GCNNNNNNNGC 2 cut(s) 71, 431
NdeI CATATG 1 cut(s) 259
NdeII GATC 4 cut(s) 87, 238, 313, 717
NheI GCTAGC 1 cut(s) 110
NlaIII CATG 9 cut(s) 245, 256, 341, 367, 497, 635, 718, 724, 842
NlaIV GGNNCC 1 cut(s) 679
NmuCI GTSAC 1 cut(s) 457
NspI RCATGY 1 cut(s) 367
PagI TCATGA 2 cut(s) 493, 631
PceI AGGCCT 1 cut(s) 95
PfeI GAWTC 3 cut(s) 565, 615, 628
PshBI ATTAAT 1 cut(s) 930
PsiI TTATAA 2 cut(s) 170, 912
PspN4I GGNNCC 1 cut(s) 679
PspPI GGNCC 1 cut(s) 9
PstI CTGCAG 1 cut(s) 60
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
RseI CAYNNNNRTG 2 cut(s) 498, 719
SaqAI TTAA 5 cut(s) 276, 288, 609, 788, 930
Sau3AI GATC 4 cut(s) 87, 238, 313, 717
Sau96I GGNCC 1 cut(s) 9
SduI GDGCHC 1 cut(s) 337
SetI ASST 4 cut(s) 310, 596, 750, 849
SfaNI GCATC 6 cut(s) 31, 484, 625, 754, 819, 913
SfcI CTRYAG 1 cut(s) 56
SmiMI CAYNNNNRTG 2 cut(s) 498, 719
SseBI AGGCCT 1 cut(s) 95
SsiI CCGC 3 cut(s) 114, 603, 695
SspMI CTAG 4 cut(s) 111, 207, 317, 540
StuI AGGCCT 1 cut(s) 95
TaaI ACNGT 2 cut(s) 158, 220
TaqI TCGA 2 cut(s) 86, 871
TatI WGTACW 1 cut(s) 265
TfiI GAWTC 3 cut(s) 565, 615, 628
Tru1I TTAA 5 cut(s) 276, 288, 609, 788, 930
Tru9I TTAA 5 cut(s) 276, 288, 609, 788, 930
TscAI CASTG 4 cut(s) 65, 81, 153, 163
TseFI GTSAC 1 cut(s) 457
Tsp45I GTSAC 1 cut(s) 457
TspDTI ATGAA 2 cut(s) 313, 855
TspRI CASTG 4 cut(s) 65, 81, 153, 163
VspI ATTAAT 1 cut(s) 930
XapI RAATTY 3 cut(s) 26, 176, 797
XceI RCATGY 1 cut(s) 367
XmiI GTMKAC 1 cut(s) 888
XspI CTAG 4 cut(s) 111, 207, 317, 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.