FvH4_7g09780

Aminotransferase class-V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002899
Physical Location & Seq
Forward (+)
9349945 .. 9350922
978 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g09780.t1

Sequence Viewer

Length: 978 bp
ATGTTATTGACCGATGGCGGTAGCTTCATCTTGAAAGGGGATGCTGTCATCACACTGCAGTGTGCTTATGGCGCGGCGAAGAACTCCATTAAGGCCTATTTTGAGCGAGCTGGCGAGTATGTTATTGAAGTTCCATTTCAATTTCCAGTGAATTCCAGTGAAGAAATAGTAAATGAATTTCAGATGGCTTTGGTGAAGGAAAAGGCTAGTGGTAGAAGAGTTAGATTAGCTCTGATTGATCATGTTACATCCATGCCATCTGTTTTACTTCCAGTTAAGAAATTGGTTGAAGTGTGCAGGGAAGAAGGTGTTAATCAAGTTTTCATAGATGGGGCTCATGGTGTTGGGTGTGTAGATGTTGATATGCAAGAAATAGGAGCAGATTTTTACGCTAGTAATTTGCACAAGTGGTTCGTCTGCCCTGCTTCGGTTGCATTTCTGTATTGTAGGAAGTCAGTCACACATTCAGAACTGCATCATCCTATGGTGTCTCATGATTATGGTAAAGGGTTGGCTATTGAAAGCTGCTGGATAGGGACTAGGGATTATAGTCCTTTAGTAGTTCCTTCAGCTGTGGAGTTCACAAACAGATTTGAAGGCGGTATCAATGGAATCAAAAGGAGGAATCATGATGTTGTTGTTGAGAAGGGAAAGATGTTGGCAAAGGCTTGGGGAACCAATCTTGGGTCTCCACCGGATATGTGTGCAAGCATGATCATGGTGGGAATCATGCCGGCTTGTTTGGGGGTTTCAAGTGATGATGATGCCTTGAAATTAAGGACACATCTGAGGGAGAAATTTGGTGTTGAAGTACCAATATATTACCGAATGCCGAAGCATGAAGAGGTTGCAAAAACAACAACTGCGTATGCTCAAGTTTCTCATCAAGTCTACAACAAAGTTGATGACTATTATAAGTTCAGAGATGCAATCAATCAACTTGTTTGTGATGGGTTCACCTGTGCTCGATCTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 map00270
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

326

Amino Acids

36.09

Weight (kDa)

6.42

Isoelectric Point (pI)

40.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 62 - 154 3.7e-11 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 915
AccI GTMKAC 1 cut(s) 891
AccII CGCG 1 cut(s) 74
AciI CCGC 3 cut(s) 18, 74, 600
AcsI RAATTY 3 cut(s) 151, 176, 797
AcuI CTGAAG 1 cut(s) 552
AfaI GTAC 1 cut(s) 813
AfiI CCNNNNNNNGG 2 cut(s) 427, 684
AgsI TTSAA 9 cut(s) 34, 128, 140, 290, 521, 596, 753, 772, 809
AleI CACNNNNGTG 1 cut(s) 58
AluBI AGCT 5 cut(s) 24, 110, 230, 525, 572
AluI AGCT 5 cut(s) 24, 110, 230, 525, 572
Alw21I GWGCWC 1 cut(s) 967
Alw26I GTCTC 2 cut(s) 495, 693
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 525
ApoI RAATTY 3 cut(s) 151, 176, 797
AspLEI GCGC 1 cut(s) 74
AsuHPI GGTGA 2 cut(s) 205, 949
BanII GRGCYC 1 cut(s) 337
Bbv12I GWGCWC 1 cut(s) 967
BbvI GCAGC 1 cut(s) 512
BccI CCATC 5 cut(s) 8, 178, 265, 323, 944
BclI TGATCA 2 cut(s) 238, 714
BcoDI GTCTC 2 cut(s) 495, 693
BfaI CTAG 3 cut(s) 207, 393, 540
BfmI CTRYAG 1 cut(s) 56
BisI GCNGC 2 cut(s) 75, 526
BlsI GCNGC 2 cut(s) 76, 527
BmiI GGNNCC 1 cut(s) 676
BmsI GCATC 4 cut(s) 31, 484, 754, 916
BpuEI CTTGAG 1 cut(s) 858
BsaI GGTCTC 1 cut(s) 693
BsaWI WCCGGW 1 cut(s) 694
Bsc4I CCNNNNNNNGG 2 cut(s) 427, 684
Bse118I RCCGGY 1 cut(s) 733
Bse1I ACTGG 3 cut(s) 146, 156, 272
BseGI GGATG 3 cut(s) 46, 248, 478
BseLI CCNNNNNNNGG 2 cut(s) 427, 684
BseMII CTCAG 1 cut(s) 779
BseNI ACTGG 3 cut(s) 146, 156, 272
BseXI GCAGC 1 cut(s) 512
BsgI GTGCAG 1 cut(s) 316
Bsh1236I CGCG 1 cut(s) 74
BshFI GGCC 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 967
BsiSI CCGG 2 cut(s) 695, 734
BslFI GGGAC 1 cut(s) 550
BslI CCNNNNNNNGG 2 cut(s) 427, 684
BsmAI GTCTC 2 cut(s) 495, 693
BsmFI GGGAC 1 cut(s) 550
BsmI GAATGC 1 cut(s) 834
BsnI GGCC 1 cut(s) 95
Bso31I GGTCTC 1 cut(s) 693
Bsp1286I GDGCHC 2 cut(s) 337, 967
Bsp143I GATC 3 cut(s) 238, 714, 968
BspACI CCGC 3 cut(s) 18, 74, 600
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 1 cut(s) 780
BspFNI CGCG 1 cut(s) 74
BspHI TCATGA 2 cut(s) 493, 628
BspLI GGNNCC 1 cut(s) 676
BspMAI CTGCAG 1 cut(s) 60
BspTNI GGTCTC 1 cut(s) 693
BsrFI RCCGGY 1 cut(s) 733
BsrI ACTGG 3 cut(s) 146, 156, 272
BssAI RCCGGY 1 cut(s) 733
BssMI GATC 3 cut(s) 238, 714, 968
Bst6I CTCTTC 2 cut(s) 211, 837
BstC8I GCNNGC 4 cut(s) 108, 112, 709, 735
BstDEI CTNAG 1 cut(s) 788
BstF5I GGATG 3 cut(s) 46, 248, 478
BstFNI CGCG 1 cut(s) 74
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 3 cut(s) 241, 717, 971
BstMAI GTCTC 2 cut(s) 495, 693
BstMBI GATC 3 cut(s) 238, 714, 968
BstMWI GCNNNNNNNGC 2 cut(s) 71, 431
BstSFI CTRYAG 1 cut(s) 56
BstUI CGCG 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 512
BsuRI GGCC 1 cut(s) 95
BtsCI GGATG 3 cut(s) 46, 248, 478
BtsI GCAGTG 2 cut(s) 53, 65
BtsIMutI CAGTG 4 cut(s) 53, 65, 153, 163
Cac8I GCNNGC 4 cut(s) 108, 112, 709, 735
CciI TCATGA 2 cut(s) 493, 628
CfoI GCGC 1 cut(s) 74
Cfr10I RCCGGY 1 cut(s) 733
Csp6I GTAC 1 cut(s) 812
CviAII CATG 9 cut(s) 242, 253, 338, 494, 629, 712, 718, 730, 839
CviQI GTAC 1 cut(s) 812
DdeI CTNAG 1 cut(s) 788
DpnI GATC 3 cut(s) 240, 716, 970
DpnII GATC 3 cut(s) 238, 714, 968
Eam1104I CTCTTC 2 cut(s) 211, 837
EarI CTCTTC 2 cut(s) 211, 837
Eco147I AGGCCT 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 337
Eco31I GGTCTC 1 cut(s) 693
Eco57I CTGAAG 1 cut(s) 552
EcoRI GAATTC 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 337
FaeI CATG 9 cut(s) 245, 256, 341, 497, 632, 715, 721, 733, 842
FaqI GGGAC 1 cut(s) 550
FatI CATG 9 cut(s) 241, 252, 337, 493, 628, 711, 717, 729, 838
FbaI TGATCA 2 cut(s) 238, 714
FblI GTMKAC 1 cut(s) 891
Fnu4HI GCNGC 2 cut(s) 75, 526
FokI GGATG 3 cut(s) 53, 235, 465
FriOI GRGCYC 1 cut(s) 337
Fsp4HI GCNGC 2 cut(s) 75, 526
FspBI CTAG 3 cut(s) 207, 393, 540
GlaI GCGC 1 cut(s) 73
GluI GCNGC 2 cut(s) 75, 526
HaeIII GGCC 1 cut(s) 95
HapII CCGG 2 cut(s) 695, 734
HhaI GCGC 1 cut(s) 74
Hin1II CATG 9 cut(s) 245, 256, 341, 497, 632, 715, 721, 733, 842
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HinfI GANTC 3 cut(s) 612, 625, 726
HpaII CCGG 2 cut(s) 695, 734
HphI GGTGA 2 cut(s) 205, 949
Hpy166II GTNNAC 3 cut(s) 582, 892, 957
Hpy188I TCNGA 5 cut(s) 183, 234, 469, 789, 923
Hpy188III TCNNGA 3 cut(s) 31, 494, 629
Hpy8I GTNNAC 3 cut(s) 582, 892, 957
HpyAV CCTTC 5 cut(s) 190, 299, 576, 590, 640
HpyCH4V TGCA 9 cut(s) 58, 297, 367, 403, 434, 475, 707, 851, 929
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 431
HpyF3I CTNAG 1 cut(s) 788
Hsp92II CATG 9 cut(s) 245, 256, 341, 497, 632, 715, 721, 733, 842
HspAI GCGC 1 cut(s) 72
KroI GCCGGC 1 cut(s) 733
KroNI GCCGGC 1 cut(s) 735
Ksp22I TGATCA 2 cut(s) 238, 714
Kzo9I GATC 3 cut(s) 238, 714, 968
LmnI GCTCC 1 cut(s) 377
Lsp1109I GCAGC 1 cut(s) 512
LweI GCATC 4 cut(s) 31, 484, 754, 916
MaeI CTAG 3 cut(s) 207, 393, 540
MaeIII GTNAC 2 cut(s) 244, 457
MalI GATC 3 cut(s) 240, 716, 970
MboI GATC 3 cut(s) 238, 714, 968
MboII GAAGA 5 cut(s) 91, 173, 228, 314, 854
MhlI GDGCHC 2 cut(s) 337, 967
MluCI AATT 7 cut(s) 140, 151, 176, 281, 397, 773, 797
MnlI CCTC 3 cut(s) 615, 783, 838
MroNI GCCGGC 1 cut(s) 733
MseI TTAA 4 cut(s) 90, 276, 312, 776
MslI CAYNNNNRTG 3 cut(s) 58, 498, 716
MspA1I CMGCKG 1 cut(s) 572
MspI CCGG 2 cut(s) 695, 734
Mva1269I GAATGC 1 cut(s) 834
MvnI CGCG 1 cut(s) 74
MwoI GCNNNNNNNGC 2 cut(s) 71, 431
NaeI GCCGGC 1 cut(s) 735
NdeII GATC 3 cut(s) 238, 714, 968
NgoMIV GCCGGC 1 cut(s) 733
NlaIII CATG 9 cut(s) 245, 256, 341, 497, 632, 715, 721, 733, 842
NlaIV GGNNCC 1 cut(s) 676
NmuCI GTSAC 1 cut(s) 457
OliI CACNNNNGTG 1 cut(s) 58
PagI TCATGA 2 cut(s) 493, 628
PceI AGGCCT 1 cut(s) 95
PctI GAATGC 1 cut(s) 834
PdiI GCCGGC 1 cut(s) 735
PfeI GAWTC 3 cut(s) 612, 625, 726
PkrI GCNGC 2 cut(s) 76, 527
PsiI TTATAA 1 cut(s) 915
PspN4I GGNNCC 1 cut(s) 676
PstI CTGCAG 1 cut(s) 60
PvuII CAGCTG 1 cut(s) 572
RsaI GTAC 1 cut(s) 813
RsaNI GTAC 1 cut(s) 812
RseI CAYNNNNRTG 3 cut(s) 58, 498, 716
SaqAI TTAA 4 cut(s) 90, 276, 312, 776
SatI GCNGC 2 cut(s) 75, 526
Sau3AI GATC 3 cut(s) 238, 714, 968
SduI GDGCHC 2 cut(s) 337, 967
SetI ASST 8 cut(s) 26, 112, 232, 310, 527, 574, 849, 962
SfaNI GCATC 4 cut(s) 31, 484, 754, 916
SfcI CTRYAG 1 cut(s) 56
SmiMI CAYNNNNRTG 3 cut(s) 58, 498, 716
SmlI CTYRAG 1 cut(s) 873
SmoI CTYRAG 1 cut(s) 873
Sse9I AATT 7 cut(s) 140, 151, 176, 281, 397, 773, 797
SseBI AGGCCT 1 cut(s) 95
SsiI CCGC 3 cut(s) 18, 74, 600
SspMI CTAG 3 cut(s) 207, 393, 540
StuI AGGCCT 1 cut(s) 95
TaqI TCGA 1 cut(s) 967
TaqII GACCGA 1 cut(s) 26
TasI AATT 7 cut(s) 140, 151, 176, 281, 397, 773, 797
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 3 cut(s) 612, 625, 726
Tru1I TTAA 4 cut(s) 90, 276, 312, 776
Tru9I TTAA 4 cut(s) 90, 276, 312, 776
TscAI CASTG 4 cut(s) 60, 65, 153, 163
TseFI GTSAC 1 cut(s) 457
TseI GCWGC 1 cut(s) 525
Tsp45I GTSAC 1 cut(s) 457
TspDTI ATGAA 4 cut(s) 16, 189, 313, 855
TspRI CASTG 4 cut(s) 60, 65, 153, 163
XapI RAATTY 3 cut(s) 151, 176, 797
XmiI GTMKAC 1 cut(s) 891
XspI CTAG 3 cut(s) 207, 393, 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.