Rorug03G0028400

Aminotransferase class-V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0002899
Physical Location & Seq
Reverse (-)
2260146 .. 2260421
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0028400.1

Sequence Viewer

Length: 225 bp
ATGGGAAGTGCTTCTAATGTGAGATCCACATTCCACCTCTACCATCCGCAGGATAACAACTGGGACCTGCTTGCAGTAGGTGCCTTCTGCGCCACGTTTGATGAGGATCAGCCCTTCGAATGGCGCAGCAGATATGGATGGACTGCCTTCTGCAGACCCAATGGCCCTAGCGGAGCAGACGCTTGCGGAAAATGCCTAGTGATAGACACTGATGGAAGAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 map00270
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

74

Amino Acids

8.19

Weight (kDa)

4.99

Isoelectric Point (pI)

40.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Barwin PF00967 3 - 69 8.5e-27 Barwin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 75
AccB1I GGYRCC 1 cut(s) 80
AciI CCGC 3 cut(s) 47, 171, 186
AclWI GGATC 2 cut(s) 18, 114
AfiI CCNNNNNNNGG 2 cut(s) 49, 120
AlwI GGATC 2 cut(s) 18, 114
AoxI GGCC 1 cut(s) 163
ApeKI GCWGC 1 cut(s) 126
Asp700I GAANNNNTTC 1 cut(s) 10
AspLEI GCGC 2 cut(s) 92, 126
AspS9I GGNCC 2 cut(s) 64, 164
AsuII TTCGAA 1 cut(s) 117
AvaII GGWCC 1 cut(s) 64
BanI GGYRCC 1 cut(s) 80
BbvI GCAGC 1 cut(s) 138
BccI CCATC 3 cut(s) 51, 132, 206
BfaI CTAG 3 cut(s) 168, 197, 223
BfmI CTRYAG 1 cut(s) 151
BfuAI ACCTGC 1 cut(s) 75
BisI GCNGC 1 cut(s) 127
BlsI GCNGC 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 64
BmgT120I GGNCC 2 cut(s) 64, 164
BmiI GGNNCC 2 cut(s) 65, 82
BmrI ACTGGG 1 cut(s) 70
BmuI ACTGGG 1 cut(s) 70
Bpu14I TTCGAA 1 cut(s) 117
BsaBI GATNNNNATC 1 cut(s) 105
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 120
Bse1I ACTGG 1 cut(s) 65
Bse8I GATNNNNATC 1 cut(s) 105
BseGI GGATG 2 cut(s) 43, 143
BseJI GATNNNNATC 1 cut(s) 105
BseLI CCNNNNNNNGG 2 cut(s) 49, 120
BseNI ACTGG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 138
BshFI GGCC 1 cut(s) 165
BshNI GGYRCC 1 cut(s) 80
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 2 cut(s) 49, 120
BsmFI GGGAC 1 cut(s) 77
BsnI GGCC 1 cut(s) 165
Bsp119I TTCGAA 1 cut(s) 117
Bsp143I GATC 2 cut(s) 23, 106
BspACI CCGC 3 cut(s) 47, 171, 186
BspANI GGCC 1 cut(s) 165
BspLI GGNNCC 2 cut(s) 65, 82
BspMAI CTGCAG 1 cut(s) 155
BspMI ACCTGC 1 cut(s) 75
BspPI GGATC 2 cut(s) 18, 114
BspT104I TTCGAA 1 cut(s) 117
BspT107I GGYRCC 1 cut(s) 80
BsrI ACTGG 1 cut(s) 65
BssMI GATC 2 cut(s) 23, 106
Bst6I CTCTTC 1 cut(s) 211
BstAPI GCANNNNNTGC 1 cut(s) 80
BstBI TTCGAA 1 cut(s) 117
BstC8I GCNNGC 2 cut(s) 72, 184
BstF5I GGATG 2 cut(s) 43, 143
BstHHI GCGC 2 cut(s) 92, 126
BstKTI GATC 2 cut(s) 26, 109
BstMBI GATC 2 cut(s) 23, 106
BstMWI GCNNNNNNNGC 3 cut(s) 80, 89, 192
BstSFI CTRYAG 1 cut(s) 151
BstV1I GCAGC 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 23
BstYI RGATCY 1 cut(s) 23
BsuRI GGCC 1 cut(s) 165
BtsCI GGATG 2 cut(s) 43, 143
BtsIMutI CAGTG 1 cut(s) 207
BveI ACCTGC 1 cut(s) 75
Cac8I GCNNGC 2 cut(s) 72, 184
CfoI GCGC 2 cut(s) 92, 126
Cfr13I GGNCC 2 cut(s) 64, 164
CseI GACGC 1 cut(s) 188
CviJI RGCY 3 cut(s) 112, 165, 222
CviKI_1 RGCY 3 cut(s) 112, 165, 222
DpnI GATC 2 cut(s) 25, 108
DpnII GATC 2 cut(s) 23, 106
Eam1104I CTCTTC 1 cut(s) 211
EarI CTCTTC 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 64
EcoO109I RGGNCCY 1 cut(s) 64
FaiI YATR 1 cut(s) 135
FaqI GGGAC 1 cut(s) 77
Fnu4HI GCNGC 1 cut(s) 127
FokI GGATG 2 cut(s) 30, 150
Fsp4HI GCNGC 1 cut(s) 127
FspBI CTAG 3 cut(s) 168, 197, 223
GlaI GCGC 2 cut(s) 91, 125
GluI GCNGC 1 cut(s) 127
HaeIII GGCC 1 cut(s) 165
HgaI GACGC 1 cut(s) 188
HhaI GCGC 2 cut(s) 92, 126
Hin6I GCGC 2 cut(s) 90, 124
HinP1I GCGC 2 cut(s) 90, 124
HpyAV CCTTC 3 cut(s) 94, 124, 157
HpyCH4IV ACGT 1 cut(s) 95
HpyCH4V TGCA 2 cut(s) 74, 153
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 89, 192
HpySE526I ACGT 1 cut(s) 95
HspAI GCGC 2 cut(s) 90, 124
Kzo9I GATC 2 cut(s) 23, 106
LmnI GCTCC 1 cut(s) 173
LpnPI CCDG 3 cut(s) 35, 46, 80
Lsp1109I GCAGC 1 cut(s) 138
MaeI CTAG 3 cut(s) 168, 197, 223
MaeII ACGT 1 cut(s) 95
MalI GATC 2 cut(s) 25, 108
MboI GATC 2 cut(s) 23, 106
MflI RGATCY 1 cut(s) 23
MnlI CCTC 3 cut(s) 47, 97, 212
MroXI GAANNNNTTC 1 cut(s) 10
MwoI GCNNNNNNNGC 3 cut(s) 80, 89, 192
NdeII GATC 2 cut(s) 23, 106
NlaIV GGNNCC 2 cut(s) 65, 82
NspV TTCGAA 1 cut(s) 117
PdmI GAANNNNTTC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 128
PpuMI RGGWCCY 1 cut(s) 64
Psp5II RGGWCCY 1 cut(s) 64
PspN4I GGNNCC 2 cut(s) 65, 82
PspPI GGNCC 2 cut(s) 64, 164
PspPPI RGGWCCY 1 cut(s) 64
PstI CTGCAG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 23
SatI GCNGC 1 cut(s) 127
Sau3AI GATC 2 cut(s) 23, 106
Sau96I GGNCC 2 cut(s) 64, 164
SetI ASST 4 cut(s) 39, 69, 82, 98
SfcI CTRYAG 1 cut(s) 151
SfuI TTCGAA 1 cut(s) 117
SgeI CNNG 8 cut(s) 62, 73, 79, 83, 106, 180, 195, 209
SinI GGWCC 1 cut(s) 64
SsiI CCGC 3 cut(s) 47, 171, 186
SspMI CTAG 3 cut(s) 168, 197, 223
TaiI ACGT 1 cut(s) 98
TaqI TCGA 1 cut(s) 117
TscAI CASTG 1 cut(s) 214
TseI GCWGC 1 cut(s) 126
TspRI CASTG 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 64
XmnI GAANNNNTTC 1 cut(s) 10
XspI CTAG 3 cut(s) 168, 197, 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.