Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002899

Physical Location & Seq

Genomic Coordinates Forward (+)

27564889 .. 27566691

Gene Structure 1803 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G305200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGATGAACAATGGCAGCTTTGGTTGCTGCCCTGCTTCTGTCATCTCTGCCTTGCAACAATGGCAGCTCAAAATGCTCCGCCAGCCGTGCAATTTCTTCTTGAATGATCTCCAGAACAGGATACTTGAATCAAGAACCATAATTAAAGACCTTATCAACGCAGAAGATGTGGATGAAGTCTCCATTGTAGACAACATCTCCACTGCTGCTGCCATAGTCCTGCAGCAAACAGCATGGGCCTTTGCTGAAGGGAAATTCAACAAGGGGGATACTGTCATTATGTTTAGCTGCACTTATGGTGCAGTGAAGAACTCAATCAAGGCCTACTTTTCACGTGCTGGTGGGTATGTTATCGAAGTTCCATTTAACTTTCCATTGAATTCCAATGAAGAAATCATAAGTGAATTTAGGAAAGCATTGGAGAGAGAAAAGGGTAATGGTAGGAGAGTGAGATTGGCTGTGATAGATCATGTCACATGCATGCCAAGTGTTGTAATGCCAGTTAAGCAATTGGTTAAAATCGTTAGGGAAGAAGGTGTTGAACAAGTTTTCATAGATGCAGCTCATGGTGTTGGGTGCGTAGATGTTGATATGCAAGAAATTGGGGCAGATTTTTATGCTAGTACTTTGTATAAGTGGTTCTTCTGCCCACCTGCAGCTGCATTTTTGTATTGTAGGAAGTCAGCTACATATTCAGATTTGGAATTACATCACCCTGTTGTATCTCATAGGTATGGTAAGGGGTTGGCTGAAGAAAGTTTTTGGGTTGGGACAAGGGATTATAGTCCATATCTGGTGCTTCCTTCAGCTATGGAGTTCGTTAAGAGATTCGAAGGCGGTGTTGAGGGAATCAGAAAAATGAATCATGATGCTGTTGTAGAGATGGGGAAGATGTTGGCAGAAGCTTGGGGAACCAATCTAGGCTGCCCTCCTGATATGTGTGCTAGCATGATCATGGTTGGTTTACCGTCTTGTTTGGGGATTTCAAGTGATGATGATGCTATGAAGTTATGGGCACATTTACGCAAGAAATTTGGTGTTGAAGTCAGGATACATTATCAAGCTCCCAAAGATGGAGAGGTTGTGTTGACAACGGGGTACATTCGAATTTGTCATCAGATTTACAACAAAGTTGATGACTATTACAAGCTCAGAGATACAATTAATCAACTCGTTCATGACGGGTTCACTTGCGCTCTTGAGTTCAGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

405

Amino Acids

45.35

Weight (kDa)

5.85

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62130 AT3G62130
fragaria_vesca	FvH4_4g04240 FvH4_6g08442 FvH4_6g08442 FvH4_6g08590 FvH4_6g34050 FvH4_7g09780
malus_domestica	MD12G1200200.v1.1
prunus_persica	Prupe.6G305000_v2.0.a1 Prupe.6G305100_v2.0.a1 Prupe.6G305200_v2.0.a1 Prupe.6G305300_v2.0.a1 Prupe.6G305300_v2.0.a1
pyrus_communis	pycom12g18680
rosa_chinensis	RchiOBHm_Chr2g0123491 RchiOBHm_Chr2g0123501 RchiOBHm_Chr2g0123511 RchiOBHm_Chr3g0458441
rosa_laevigata	RLG00000015569 RLG00000015570 RLG00000025157
rosa_multiflora	Rmu_sc0013809.1_g000004 Rmu_sc0017098.1_g000006 Rmu_sc0017098.1_g000007 Rmu_ssc0000091.1_g000003
rosa_rugosa	Rorug03G0028400 Rorug03G0028700
rosa_samantha	Rh2AG304800 Rh2BG312900 Rh2BG313000 Rh2CG291300 Rh2DG328800 Rh3BG090600 Rh3DG091400
rosa_wichuraiana	Rw0G018550 Rw2G024430 Rw3G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	661
Acc36I	ACCTGC	1 cut(s)	661
AccI	GTMKAC	1 cut(s)	189
AciI	CCGC	2 cut(s)	79, 837
AcsI	RAATTY	5 cut(s)	254, 379, 404, 1031, 1107
AcuI	CTGAAG	3 cut(s)	267, 771, 789
AcvI	CACGTG	1 cut(s)	335
AfaI	GTAC	2 cut(s)	625, 1100
AfiI	CCNNNNNNNGG	1 cut(s)	1073
AgsI	TTSAA	7 cut(s)	103, 128, 259, 379, 542, 987, 1043
Alw26I	GTCTC	1 cut(s)	184
AoxI	GGCC	2 cut(s)	237, 321
ApoI	RAATTY	5 cut(s)	254, 379, 404, 1031, 1107
AseI	ATTAAT	1 cut(s)	1164
AspLEI	GCGC	1 cut(s)	1196
AspS9I	GGNCC	1 cut(s)	237
AsuHPI	GGTGA	1 cut(s)	704
AsuII	TTCGAA	2 cut(s)	831, 1105
AsuNHI	GCTAGC	1 cut(s)	944
BaeGI	GKGCMC	1 cut(s)	1018
BarI	GAAGNNNNNNTAC	2 cut(s)	1035, 1067
BbrPI	CACGTG	1 cut(s)	335
BccI	CCATC	2 cut(s)	877, 1067
BceAI	ACGGC	1 cut(s)	70
BciVI	GTATCC	3 cut(s)	114, 262, 1044
BclI	TGATCA	1 cut(s)	951
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	3 cut(s)	621, 920, 945
BfmI	CTRYAG	2 cut(s)	221, 654
BfuAI	ACCTGC	1 cut(s)	661
BfuI	GTATCC	3 cut(s)	114, 262, 1044
BmcAI	AGTACT	1 cut(s)	625
BmgT120I	GGNCC	1 cut(s)	237
BmiI	GGNNCC	1 cut(s)	913
BmsI	GCATC	3 cut(s)	547, 859, 988
BmtI	GCTAGC	1 cut(s)	948
BpmI	CTGGAG	1 cut(s)	95
Bpu14I	TTCGAA	2 cut(s)	831, 1105
BsaAI	YACGTR	1 cut(s)	335
BsaXI	ACNNNNNCTCC	4 cut(s)	182, 212, 1068, 1098
Bsc4I	CCNNNNNNNGG	1 cut(s)	1073
Bse1I	ACTGG	1 cut(s)	500
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	1073
BseMII	CTCAG	1 cut(s)	1165
BseNI	ACTGG	1 cut(s)	500
BseSI	GKGCMC	1 cut(s)	1018
BsgI	GTGCAG	2 cut(s)	274, 321
BshFI	GGCC	2 cut(s)	239, 323
BslFI	GGGAC	1 cut(s)	784
BslI	CCNNNNNNNGG	1 cut(s)	1073
BsmAI	GTCTC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	784
BsnI	GGCC	2 cut(s)	239, 323
Bsp119I	TTCGAA	2 cut(s)	831, 1105
Bsp1286I	GDGCHC	1 cut(s)	1018
Bsp143I	GATC	3 cut(s)	106, 466, 951
BspACI	CCGC	2 cut(s)	79, 837
BspANI	GGCC	2 cut(s)	239, 323
BspCNI	CTCAG	1 cut(s)	1164
BspHI	TCATGA	2 cut(s)	865, 1177
BspLI	GGNNCC	1 cut(s)	913
BspMAI	CTGCAG	2 cut(s)	225, 658
BspMI	ACCTGC	1 cut(s)	661
BspOI	GCTAGC	1 cut(s)	948
BspT104I	TTCGAA	2 cut(s)	831, 1105
BsrI	ACTGG	1 cut(s)	500
BssMI	GATC	3 cut(s)	106, 466, 951
Bst4CI	ACNGT	2 cut(s)	274, 969
BstBAI	YACGTR	1 cut(s)	335
BstBI	TTCGAA	2 cut(s)	831, 1105
BstC8I	GCNNGC	3 cut(s)	83, 482, 946
BstDEI	CTNAG	1 cut(s)	1151
BstF5I	GGATG	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	1196
BstKTI	GATC	3 cut(s)	109, 469, 954
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	3 cut(s)	106, 466, 951
BstMWI	GCNNNNNNNGC	6 cut(s)	24, 61, 73, 82, 87, 505
BstNSI	RCATGY	2 cut(s)	480, 484
BstSFI	CTRYAG	2 cut(s)	221, 654
BstSLI	GKGCMC	1 cut(s)	1018
BsuI	GTATCC	3 cut(s)	114, 262, 1044
BsuRI	GGCC	2 cut(s)	239, 323
BtsCI	GGATG	1 cut(s)	178
BtsI	GCAGTG	2 cut(s)	201, 309
BtsIMutI	CAGTG	2 cut(s)	201, 309
BveI	ACCTGC	1 cut(s)	661
Cac8I	GCNNGC	3 cut(s)	83, 482, 946
CciI	TCATGA	2 cut(s)	865, 1177
CfoI	GCGC	1 cut(s)	1196
Cfr13I	GGNCC	1 cut(s)	237
Csp6I	GTAC	2 cut(s)	624, 1099
CviAII	CATG	9 cut(s)	234, 470, 477, 481, 566, 866, 949, 955, 1178
CviQI	GTAC	2 cut(s)	624, 1099
DdeI	CTNAG	1 cut(s)	1151
DpnI	GATC	3 cut(s)	108, 468, 953
DpnII	GATC	3 cut(s)	106, 466, 951
EciI	GGCGGA	1 cut(s)	68
Eco147I	AGGCCT	1 cut(s)	323
Eco57I	CTGAAG	3 cut(s)	267, 771, 789
Eco72I	CACGTG	1 cut(s)	335
EcoRI	GAATTC	1 cut(s)	379
EcoT22I	ATGCAT	1 cut(s)	482
FaeI	CATG	9 cut(s)	237, 473, 480, 484, 569, 869, 952, 958, 1181
FalI	AAGNNNNNCTT	4 cut(s)	311, 343, 626, 658
FaqI	GGGAC	1 cut(s)	784
FatI	CATG	9 cut(s)	233, 469, 476, 480, 565, 865, 948, 954, 1177
FbaI	TGATCA	1 cut(s)	951
FblI	GTMKAC	1 cut(s)	189
FokI	GGATG	1 cut(s)	185
FspBI	CTAG	3 cut(s)	621, 920, 945
GlaI	GCGC	1 cut(s)	1195
GsuI	CTGGAG	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	239, 323
HhaI	GCGC	1 cut(s)	1196
Hin1II	CATG	9 cut(s)	237, 473, 480, 484, 569, 869, 952, 958, 1181
Hin6I	GCGC	1 cut(s)	1194
HinP1I	GCGC	1 cut(s)	1194
HincII	GTYRAC	1 cut(s)	1089
HindII	GTYRAC	1 cut(s)	1089
HindIII	AAGCTT	1 cut(s)	903
HinfI	GANTC	4 cut(s)	128, 828, 849, 862
HphI	GGTGA	1 cut(s)	704
Hpy166II	GTNNAC	4 cut(s)	190, 965, 1089, 1188
Hpy188I	TCNGA	4 cut(s)	697, 854, 1119, 1154
Hpy188III	TCNNGA	8 cut(s)	100, 112, 132, 866, 932, 1048, 1178, 1199
Hpy8I	GTNNAC	4 cut(s)	190, 965, 1089, 1188
HpyAV	CCTTC	4 cut(s)	242, 527, 813, 827
HpyCH4III	ACNGT	2 cut(s)	274, 969
HpyCH4IV	ACGT	1 cut(s)	334
HpyF10VI	GCNNNNNNNGC	6 cut(s)	24, 61, 73, 82, 87, 505
HpyF3I	CTNAG	1 cut(s)	1151
HpySE526I	ACGT	1 cut(s)	334
Hsp92II	CATG	9 cut(s)	237, 473, 480, 484, 569, 869, 952, 958, 1181
HspAI	GCGC	1 cut(s)	1194
Ksp22I	TGATCA	1 cut(s)	951
Kzo9I	GATC	3 cut(s)	106, 466, 951
LmnI	GCTCC	2 cut(s)	81, 1069
LweI	GCATC	3 cut(s)	547, 859, 988
MaeI	CTAG	3 cut(s)	621, 920, 945
MaeII	ACGT	1 cut(s)	334
MaeIII	GTNAC	1 cut(s)	472
MalI	GATC	3 cut(s)	108, 468, 953
MboI	GATC	3 cut(s)	106, 466, 951
MboII	GAAGA	8 cut(s)	88, 176, 319, 401, 542, 634, 764, 901
MfeI	CAATTG	2 cut(s)	509, 1210
MhlI	GDGCHC	1 cut(s)	1018
MnlI	CCTC	3 cut(s)	838, 939, 1072
Mph1103I	ATGCAT	1 cut(s)	482
MseI	TTAA	6 cut(s)	144, 366, 504, 516, 822, 1164
MslI	CAYNNNNRTG	3 cut(s)	479, 732, 953
MspA1I	CMGCKG	1 cut(s)	659
MunI	CAATTG	2 cut(s)	509, 1210
MwoI	GCNNNNNNNGC	6 cut(s)	24, 61, 73, 82, 87, 505
NdeII	GATC	3 cut(s)	106, 466, 951
NheI	GCTAGC	1 cut(s)	944
NlaIII	CATG	9 cut(s)	237, 473, 480, 484, 569, 869, 952, 958, 1181
NlaIV	GGNNCC	1 cut(s)	913
NmuCI	GTSAC	1 cut(s)	472
NsiI	ATGCAT	1 cut(s)	482
NspI	RCATGY	2 cut(s)	480, 484
NspV	TTCGAA	2 cut(s)	831, 1105
PaeI	GCATGC	1 cut(s)	484
PagI	TCATGA	2 cut(s)	865, 1177
PaqCI	CACCTGC	1 cut(s)	661
PceI	AGGCCT	1 cut(s)	323
PfeI	GAWTC	4 cut(s)	128, 828, 849, 862
PmaCI	CACGTG	1 cut(s)	335
PmlI	CACGTG	1 cut(s)	335
Ppu21I	YACGTR	1 cut(s)	335
PshBI	ATTAAT	1 cut(s)	1164
PspCI	CACGTG	1 cut(s)	335
PspN4I	GGNNCC	1 cut(s)	913
PspPI	GGNCC	1 cut(s)	237
PsrI	GAACNNNNNNTAC	2 cut(s)	623, 655
PstI	CTGCAG	2 cut(s)	225, 658
PvuII	CAGCTG	1 cut(s)	659
RsaI	GTAC	2 cut(s)	625, 1100
RsaNI	GTAC	2 cut(s)	624, 1099
RseI	CAYNNNNRTG	3 cut(s)	479, 732, 953
SaqAI	TTAA	6 cut(s)	144, 366, 504, 516, 822, 1164
Sau3AI	GATC	3 cut(s)	106, 466, 951
Sau96I	GGNCC	1 cut(s)	237
ScaI	AGTACT	1 cut(s)	625
SduI	GDGCHC	1 cut(s)	1018
SfaNI	GCATC	3 cut(s)	547, 859, 988
SfcI	CTRYAG	2 cut(s)	221, 654
SfuI	TTCGAA	2 cut(s)	831, 1105
SmiMI	CAYNNNNRTG	3 cut(s)	479, 732, 953
SmlI	CTYRAG	1 cut(s)	1199
SmoI	CTYRAG	1 cut(s)	1199
SphI	GCATGC	1 cut(s)	484
SseBI	AGGCCT	1 cut(s)	323
SsiI	CCGC	2 cut(s)	79, 837
SspMI	CTAG	3 cut(s)	621, 920, 945
StuI	AGGCCT	1 cut(s)	323
TaaI	ACNGT	2 cut(s)	274, 969
TaiI	ACGT	1 cut(s)	337
TaqI	TCGA	3 cut(s)	354, 831, 1105
TatI	WGTACW	1 cut(s)	623
TfiI	GAWTC	4 cut(s)	128, 828, 849, 862
Tru1I	TTAA	6 cut(s)	144, 366, 504, 516, 822, 1164
Tru9I	TTAA	6 cut(s)	144, 366, 504, 516, 822, 1164
TscAI	CASTG	2 cut(s)	208, 309
TseFI	GTSAC	1 cut(s)	472
Tsp45I	GTSAC	1 cut(s)	472
TspDTI	ATGAA	7 cut(s)	20, 189, 402, 541, 875, 1019, 1166
TspRI	CASTG	2 cut(s)	208, 309
VspI	ATTAAT	1 cut(s)	1164
XapI	RAATTY	5 cut(s)	254, 379, 404, 1031, 1107
XceI	RCATGY	2 cut(s)	480, 484
XmiI	GTMKAC	1 cut(s)	189
XspI	CTAG	3 cut(s)	621, 920, 945
ZrmI	AGTACT	1 cut(s)	625
Zsp2I	ATGCAT	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.