RLG00000025157

Aminotransferase class-V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0002899
Physical Location & Seq
Forward (+)
42616767 .. 42618239
1473 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025157

Sequence Viewer

Length: 1473 bp
ATGGCTTGTCGGATAATCATGTTCTACCGGTATTATCTTCCTCATCTACTACTTCGTCATCAGAATATCCCAAACTTGAAGCCCAAACTTTCATTTCGAATTTCAGGGGCATCCTCTTACCATTATTACCACAACCTTAACCCTACTGATACCCAAACCAATTTCCCCATCAAGCCAAAACTCTCTTCCTTCATTACAGACCCTGAAATCCAAGCTGAATTTTCTCACCATGATCCGGGTGTTGCCCGGATAAACAATGGCAGCTTTGGTTGCTCCCCTGCTTCTGTTATCTCTGCATTGCAACAATGGCAACTCAAATGGCTGTGCCAGCCGGACCGTTTCCTCTTCAATGAGCTCCACAAGGGGATACTCAAATCAAGAAACACAGTTAAAGAACTTATCAATGCACAGGATGTTGATGAAATTTCCATTGTAGATAATGCCACCACAGCAGTAGCCATAGTCTTGCAGCAGATGCAGTGGGCCTTCTCTGAAGGCAAATTCAAGAAAGGCGATGCTGTCATCATACTGCAGTGTGCTTATGGTGCGGTGAAGAACTCGATCAAGGCCTATTTTTCGCGTGCTGGCGGGTATGTTTTTGAAGTTCCATTTCAATTTCCAGTGAATTCCAGTGAAGAAATTATAAGTGAATTTCGGATGGCTTTGGTGAAGGAAAAGGCTAGTGGTAGAAGAGTTAGATTGGCTATGATTGATCATGTTACATCCATGCCATCTGTTGTACTTCCAGTTAAGAGATTGGTTAAAGTTTGCAGGGAAGAAGGTGTTGATCAAGTTTTCATAGATGGGGCTCATGGTGTTGGGTGTGTAGATGTTGATATGCAAGAAATTGGAGCAGATTTTTATACTAGTAATTTACACAAGTGGTTCTTCTGCCCTGCTTCGGTTGCATTTTTGTATAGTAGGAAGTCAATCATTTATTCAGAATTGCATCATCCTGTGGTGTCTCATGAGTATGGTAAAGGGTTGGCTATTGAAAGTGGTTGGATAGGGACAAGGGATTATAGTCCTTTTTTAGTGGTTCCTTCAGCTGTGGAGTTCACAAATAGGTTTGAAGGCGGTATTGAGGGAATCAAAAGGAGGAATCATGATGCGGTTGTTGAGATGGGGAAGAAGTTGGCAAAGGCTTGGGGAACCAATCTTGGGTCTCCACCGGATATGTGTGCGAGCATGATCATGGTCGGACTACCGGCCTGTTTGGGGATTTCAAGTAATGATGATGCTTTGAAGTTAAGGACACATCTAAGGGAGCAATTTGGTGTTGAAGTCCCAATATATTACCAGATGCCAAAACATGAAGAGGTTGCAACAACAACAGGGTATGCTCGAATTTCTTATCAAGTCTACAACAAAGATGATGACTACTATAAGTTCAGAGATGCAATTAATCAACTTGTTTGTGATGGTTTCACCTGTGCTCGATCTTTAGGTAAATATGGTCTGCCTTCATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 map00270
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

491

Amino Acids

55.12

Weight (kDa)

8.35

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 93 - 312 1.2e-19 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 644
AccI GTMKAC 1 cut(s) 1362
AccII CGCG 1 cut(s) 580
AciI CCGC 4 cut(s) 548, 588, 1077, 1112
AclWI GGATC 1 cut(s) 227
AcsI RAATTY 7 cut(s) 99, 218, 423, 500, 625, 650, 1347
AcuI CTGAAG 2 cut(s) 513, 1029
AfaI GTAC 1 cut(s) 741
AfiI CCNNNNNNNGG 4 cut(s) 235, 901, 1161, 1218
AgeI ACCGGT 1 cut(s) 27
AhlI ACTAGT 1 cut(s) 866
AjuI GAANNNNNNNTTGG 2 cut(s) 169, 201
AluBI AGCT 4 cut(s) 215, 264, 355, 1049
AluI AGCT 4 cut(s) 215, 264, 355, 1049
Alw21I GWGCWC 2 cut(s) 357, 1438
Alw26I GTCTC 2 cut(s) 969, 1170
AlwI GGATC 1 cut(s) 227
AlwNI CAGNNNCTG 1 cut(s) 203
AoxI GGCC 3 cut(s) 483, 567, 1209
ApeKI GCWGC 2 cut(s) 261, 469
ApoI RAATTY 7 cut(s) 99, 218, 423, 500, 625, 650, 1347
AseI ATTAAT 1 cut(s) 1404
AsiGI ACCGGT 1 cut(s) 27
AspS9I GGNCC 2 cut(s) 334, 483
AsuC2I CCSGG 2 cut(s) 237, 247
AsuHPI GGTGA 4 cut(s) 218, 562, 679, 1420
AsuII TTCGAA 1 cut(s) 97
AvaII GGWCC 1 cut(s) 334
BanII GRGCYC 2 cut(s) 357, 811
Bbv12I GWGCWC 2 cut(s) 357, 1438
BbvI GCAGC 2 cut(s) 273, 481
BccI CCATC 6 cut(s) 176, 652, 739, 797, 1117, 1415
BciVI GTATCC 1 cut(s) 360
BclI TGATCA 3 cut(s) 712, 787, 1191
BcnI CCSGG 2 cut(s) 237, 247
BcoDI GTCTC 2 cut(s) 969, 1170
BcuI ACTAGT 1 cut(s) 866
BfaI CTAG 2 cut(s) 681, 867
BfmI CTRYAG 1 cut(s) 530
BfuI GTATCC 1 cut(s) 360
BisI GCNGC 2 cut(s) 262, 470
BlsI GCNGC 2 cut(s) 263, 471
Bme1390I CCNGG 2 cut(s) 237, 247
Bme18I GGWCC 1 cut(s) 334
BmgT120I GGNCC 2 cut(s) 334, 483
BmiI GGNNCC 2 cut(s) 1041, 1153
BmrFI CCNGG 2 cut(s) 237, 247
BmsI GCATC 8 cut(s) 119, 465, 505, 958, 1099, 1228, 1293, 1387
Bpu14I TTCGAA 1 cut(s) 97
BpuMI CCSGG 2 cut(s) 237, 247
BsaI GGTCTC 1 cut(s) 1170
BsaWI WCCGGW 2 cut(s) 27, 1171
Bsc4I CCNNNNNNNGG 4 cut(s) 235, 901, 1161, 1218
Bse118I RCCGGY 2 cut(s) 27, 1207
Bse1I ACTGG 3 cut(s) 620, 630, 746
Bse3DI GCAATG 1 cut(s) 296
BseGI GGATG 6 cut(s) 110, 418, 663, 722, 952, 1466
BseLI CCNNNNNNNGG 4 cut(s) 235, 901, 1161, 1218
BseMI GCAATG 1 cut(s) 296
BseNI ACTGG 3 cut(s) 620, 630, 746
BseXI GCAGC 2 cut(s) 273, 481
Bsh1236I CGCG 1 cut(s) 580
BshFI GGCC 3 cut(s) 485, 569, 1211
BshTI ACCGGT 1 cut(s) 27
BsiHKAI GWGCWC 2 cut(s) 357, 1438
BsiSI CCGG 6 cut(s) 28, 236, 247, 332, 1172, 1208
BslFI GGGAC 2 cut(s) 1024, 1271
BslI CCNNNNNNNGG 4 cut(s) 235, 901, 1161, 1218
BsmAI GTCTC 2 cut(s) 969, 1170
BsmFI GGGAC 2 cut(s) 1024, 1271
BsnI GGCC 3 cut(s) 485, 569, 1211
Bso31I GGTCTC 1 cut(s) 1170
Bsp119I TTCGAA 1 cut(s) 97
Bsp1286I GDGCHC 3 cut(s) 357, 811, 1438
Bsp143I GATC 6 cut(s) 232, 561, 712, 787, 1191, 1439
BspACI CCGC 4 cut(s) 548, 588, 1077, 1112
BspANI GGCC 3 cut(s) 485, 569, 1211
BspFNI CGCG 1 cut(s) 580
BspHI TCATGA 2 cut(s) 967, 1105
BspLI GGNNCC 2 cut(s) 1041, 1153
BspMAI CTGCAG 1 cut(s) 534
BspPI GGATC 1 cut(s) 227
BspT104I TTCGAA 1 cut(s) 97
BspTNI GGTCTC 1 cut(s) 1170
BsrDI GCAATG 1 cut(s) 296
BsrFI RCCGGY 2 cut(s) 27, 1207
BsrI ACTGG 3 cut(s) 620, 630, 746
BssAI RCCGGY 2 cut(s) 27, 1207
BssMI GATC 6 cut(s) 232, 561, 712, 787, 1191, 1439
Bst4CI ACNGT 2 cut(s) 338, 388
Bst6I CTCTTC 4 cut(s) 190, 350, 685, 1311
BstAPI GCANNNNNTGC 1 cut(s) 475
BstBI TTCGAA 1 cut(s) 97
BstC8I GCNNGC 4 cut(s) 329, 582, 586, 1186
BstDEI CTNAG 1 cut(s) 1262
BstF5I GGATG 6 cut(s) 110, 418, 663, 722, 952, 1466
BstFNI CGCG 1 cut(s) 580
BstKTI GATC 6 cut(s) 235, 564, 715, 790, 1194, 1442
BstMAI GTCTC 2 cut(s) 969, 1170
BstMBI GATC 6 cut(s) 232, 561, 712, 787, 1191, 1439
BstMWI GCNNNNNNNGC 7 cut(s) 270, 307, 328, 449, 475, 545, 905
BstSCI CCNGG 2 cut(s) 235, 245
BstSFI CTRYAG 1 cut(s) 530
BstUI CGCG 1 cut(s) 580
BstV1I GCAGC 2 cut(s) 273, 481
BsuI GTATCC 1 cut(s) 360
BsuRI GGCC 3 cut(s) 485, 569, 1211
BtgZI GCGATG 1 cut(s) 528
BtsCI GGATG 6 cut(s) 110, 418, 663, 722, 952, 1466
BtsI GCAGTG 2 cut(s) 485, 539
BtsIMutI CAGTG 4 cut(s) 485, 539, 627, 637
Cac8I GCNNGC 4 cut(s) 329, 582, 586, 1186
CaiI CAGNNNCTG 1 cut(s) 203
CciI TCATGA 2 cut(s) 967, 1105
Cfr10I RCCGGY 2 cut(s) 27, 1207
Cfr13I GGNCC 2 cut(s) 334, 483
CpoI CGGWCCG 1 cut(s) 334
Csp6I GTAC 1 cut(s) 740
CspAI ACCGGT 1 cut(s) 27
CspI CGGWCCG 1 cut(s) 334
CviQI GTAC 1 cut(s) 740
DdeI CTNAG 1 cut(s) 1262
DpnI GATC 6 cut(s) 234, 563, 714, 789, 1193, 1441
DpnII GATC 6 cut(s) 232, 561, 712, 787, 1191, 1439
Eam1104I CTCTTC 4 cut(s) 190, 350, 685, 1311
EarI CTCTTC 4 cut(s) 190, 350, 685, 1311
Ecl136II GAGCTC 1 cut(s) 355
Eco147I AGGCCT 1 cut(s) 569
Eco24I GRGCYC 2 cut(s) 357, 811
Eco31I GGTCTC 1 cut(s) 1170
Eco47I GGWCC 1 cut(s) 334
Eco53kI GAGCTC 1 cut(s) 355
Eco57I CTGAAG 2 cut(s) 513, 1029
EcoICRI GAGCTC 1 cut(s) 355
EcoRI GAATTC 1 cut(s) 625
EcoT38I GRGCYC 2 cut(s) 357, 811
FalI AAGNNNNNCTT 2 cut(s) 872, 904
FaqI GGGAC 2 cut(s) 1024, 1271
FauI CCCGC 1 cut(s) 581
FbaI TGATCA 3 cut(s) 712, 787, 1191
FblI GTMKAC 1 cut(s) 1362
Fnu4HI GCNGC 2 cut(s) 262, 470
FokI GGATG 6 cut(s) 97, 425, 670, 709, 939, 1453
FriOI GRGCYC 2 cut(s) 357, 811
Fsp4HI GCNGC 2 cut(s) 262, 470
FspBI CTAG 2 cut(s) 681, 867
GluI GCNGC 2 cut(s) 262, 470
HaeIII GGCC 3 cut(s) 485, 569, 1211
HapII CCGG 6 cut(s) 28, 236, 247, 332, 1172, 1208
HinfI GANTC 2 cut(s) 1089, 1102
HpaII CCGG 6 cut(s) 28, 236, 247, 332, 1172, 1208
HphI GGTGA 4 cut(s) 218, 562, 679, 1420
Hpy166II GTNNAC 2 cut(s) 1059, 1363
Hpy188I TCNGA 7 cut(s) 12, 63, 493, 657, 943, 1202, 1394
Hpy188III TCNNGA 4 cut(s) 378, 505, 968, 1106
Hpy8I GTNNAC 2 cut(s) 1059, 1363
HpyAV CCTTC 8 cut(s) 199, 488, 496, 664, 773, 1053, 1067, 1473
HpyCH4III ACNGT 2 cut(s) 338, 388
HpyF10VI GCNNNNNNNGC 7 cut(s) 270, 307, 328, 449, 475, 545, 905
HpyF3I CTNAG 1 cut(s) 1262
Ksp22I TGATCA 3 cut(s) 712, 787, 1191
Kzo9I GATC 6 cut(s) 232, 561, 712, 787, 1191, 1439
LmnI GCTCC 4 cut(s) 278, 360, 851, 1267
Lsp1109I GCAGC 2 cut(s) 273, 481
LweI GCATC 8 cut(s) 119, 465, 505, 958, 1099, 1228, 1293, 1387
MaeI CTAG 2 cut(s) 681, 867
MaeIII GTNAC 1 cut(s) 718
MalI GATC 6 cut(s) 234, 563, 714, 789, 1193, 1441
MboI GATC 6 cut(s) 232, 561, 712, 787, 1191, 1439
MhlI GDGCHC 3 cut(s) 357, 811, 1438
MmeI TCCRAC 2 cut(s) 983, 1180
MnlI CCTC 6 cut(s) 51, 124, 353, 1078, 1092, 1312
MseI TTAA 6 cut(s) 138, 390, 750, 762, 1250, 1404
MslI CAYNNNNRTG 2 cut(s) 972, 1193
MspA1I CMGCKG 1 cut(s) 1049
MspI CCGG 6 cut(s) 28, 236, 247, 332, 1172, 1208
MspR9I CCNGG 2 cut(s) 237, 247
MvnI CGCG 1 cut(s) 580
MwoI GCNNNNNNNGC 7 cut(s) 270, 307, 328, 449, 475, 545, 905
NciI CCSGG 2 cut(s) 237, 247
NdeII GATC 6 cut(s) 232, 561, 712, 787, 1191, 1439
NlaIV GGNNCC 2 cut(s) 1041, 1153
NspV TTCGAA 1 cut(s) 97
PagI TCATGA 2 cut(s) 967, 1105
PceI AGGCCT 1 cut(s) 569
PfeI GAWTC 2 cut(s) 1089, 1102
PinAI ACCGGT 1 cut(s) 27
PkrI GCNGC 2 cut(s) 263, 471
PshBI ATTAAT 1 cut(s) 1404
PsiI TTATAA 1 cut(s) 644
Psp124BI GAGCTC 1 cut(s) 357
PspN4I GGNNCC 2 cut(s) 1041, 1153
PspPI GGNCC 2 cut(s) 334, 483
PstI CTGCAG 1 cut(s) 534
PstNI CAGNNNCTG 1 cut(s) 203
PvuII CAGCTG 1 cut(s) 1049
RsaI GTAC 1 cut(s) 741
RsaNI GTAC 1 cut(s) 740
RseI CAYNNNNRTG 2 cut(s) 972, 1193
Rsr2I CGGWCCG 1 cut(s) 334
RsrII CGGWCCG 1 cut(s) 334
SacI GAGCTC 1 cut(s) 357
SaqAI TTAA 6 cut(s) 138, 390, 750, 762, 1250, 1404
SatI GCNGC 2 cut(s) 262, 470
Sau3AI GATC 6 cut(s) 232, 561, 712, 787, 1191, 1439
Sau96I GGNCC 2 cut(s) 334, 483
ScrFI CCNGG 2 cut(s) 237, 247
SduI GDGCHC 3 cut(s) 357, 811, 1438
SfaNI GCATC 8 cut(s) 119, 465, 505, 958, 1099, 1228, 1293, 1387
SfcI CTRYAG 1 cut(s) 530
SfuI TTCGAA 1 cut(s) 97
SinI GGWCC 1 cut(s) 334
SmiMI CAYNNNNRTG 2 cut(s) 972, 1193
SpeI ACTAGT 1 cut(s) 866
SseBI AGGCCT 1 cut(s) 569
SsiI CCGC 4 cut(s) 548, 588, 1077, 1112
SspMI CTAG 2 cut(s) 681, 867
SstI GAGCTC 1 cut(s) 357
StuI AGGCCT 1 cut(s) 569
StyD4I CCNGG 2 cut(s) 235, 245
TaaI ACNGT 2 cut(s) 338, 388
TaqI TCGA 4 cut(s) 97, 560, 1345, 1438
TatI WGTACW 1 cut(s) 739
TfiI GAWTC 2 cut(s) 1089, 1102
Tru1I TTAA 6 cut(s) 138, 390, 750, 762, 1250, 1404
Tru9I TTAA 6 cut(s) 138, 390, 750, 762, 1250, 1404
TscAI CASTG 4 cut(s) 485, 539, 627, 637
TseI GCWGC 2 cut(s) 261, 469
TspDTI ATGAA 6 cut(s) 81, 181, 435, 787, 1329, 1455
TspRI CASTG 4 cut(s) 485, 539, 627, 637
VpaK11BI GGWCC 1 cut(s) 334
VspI ATTAAT 1 cut(s) 1404
XapI RAATTY 7 cut(s) 99, 218, 423, 500, 625, 650, 1347
XmiI GTMKAC 1 cut(s) 1362
XspI CTAG 2 cut(s) 681, 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.