Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017098.1

Orthogroup ID

OG0002899

Physical Location & Seq

Genomic Coordinates Reverse (-)

19821 .. 20309

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017098.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atgccatatgttgtacttccagataaggaattggttaaagtttgcagggaagaaggtgttgatctagttttcatagatggggctcatggtgttgggtgtgtagatgttgacatgcaagaaattggagcagatttttacactagtaatctgcacaagtggttcttctcccctgcttcggttgcatttttatattgtaggaagtcagtcacacatttagaattgcatcatcctatggtgtctcatgactatggtaaagggttggctattgaaagtagttggatagggactagggattatagtccatctttagtgattccttcagttgtggagttcacaaataggtttgaaggcggtattaagggaatcaaaacgaggaatcatgatgctgttgttgagataggcttggggaaccaatcttgggtctccgccagatatgtgtgcaagcatgatcgtggtgggaataccggcttgtttggaggtttcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

162

Amino Acids

17.96

Weight (kDa)

6.22

Isoelectric Point (pI)

20.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62130 AT3G62130
fragaria_vesca	FvH4_4g04240 FvH4_6g08442 FvH4_6g08442 FvH4_6g08590 FvH4_6g34050 FvH4_7g09780
malus_domestica	MD12G1200200.v1.1
prunus_persica	Prupe.6G305000_v2.0.a1 Prupe.6G305100_v2.0.a1 Prupe.6G305200_v2.0.a1 Prupe.6G305300_v2.0.a1 Prupe.6G305300_v2.0.a1
pyrus_communis	pycom12g18680
rosa_chinensis	RchiOBHm_Chr2g0123491 RchiOBHm_Chr2g0123501 RchiOBHm_Chr2g0123511 RchiOBHm_Chr3g0458441
rosa_laevigata	RLG00000015569 RLG00000015570 RLG00000025157
rosa_multiflora	Rmu_sc0013809.1_g000004 Rmu_sc0017098.1_g000006 Rmu_sc0017098.1_g000007 Rmu_ssc0000091.1_g000003
rosa_rugosa	Rorug03G0028400 Rorug03G0028700
rosa_samantha	Rh2AG304800 Rh2BG312900 Rh2BG313000 Rh2CG291300 Rh2DG328800 Rh3BG090600 Rh3DG091400
rosa_wichuraiana	Rw0G018550 Rw2G024430 Rw3G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	351, 426
AcuI	CTGAAG	1 cut(s)	303
AfaI	GTAC	1 cut(s)	15
AfiI	CCNNNNNNNGG	2 cut(s)	175, 418
AgsI	TTSAA	3 cut(s)	269, 347, 484
AhlI	ACTAGT	1 cut(s)	140
Alw26I	GTCTC	2 cut(s)	243, 427
BanII	GRGCYC	1 cut(s)	85
BccI	CCATC	2 cut(s)	71, 310
BcoDI	GTCTC	2 cut(s)	243, 427
BcuI	ACTAGT	1 cut(s)	140
BfaI	CTAG	3 cut(s)	65, 141, 288
BmiI	GGNNCC	1 cut(s)	410
BmsI	GCATC	2 cut(s)	232, 373
BsaI	GGTCTC	1 cut(s)	427
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 418
Bse118I	RCCGGY	1 cut(s)	464
BseGI	GGATG	1 cut(s)	226
BseLI	CCNNNNNNNGG	2 cut(s)	175, 418
BsgI	GTGCAG	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	465
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	2 cut(s)	175, 418
BsmAI	GTCTC	2 cut(s)	243, 427
BsmFI	GGGAC	1 cut(s)	298
Bso31I	GGTCTC	1 cut(s)	427
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp143I	GATC	2 cut(s)	61, 448
BspACI	CCGC	2 cut(s)	351, 426
BspHI	TCATGA	2 cut(s)	241, 379
BspLI	GGNNCC	1 cut(s)	410
BspTNI	GGTCTC	1 cut(s)	427
BsrFI	RCCGGY	1 cut(s)	464
BssAI	RCCGGY	1 cut(s)	464
BssMI	GATC	2 cut(s)	61, 448
BstC8I	GCNNGC	1 cut(s)	443
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	2 cut(s)	64, 451
BstMAI	GTCTC	2 cut(s)	243, 427
BstMBI	GATC	2 cut(s)	61, 448
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNSI	RCATGY	1 cut(s)	115
BtsCI	GGATG	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	443
CciI	TCATGA	2 cut(s)	241, 379
Cfr10I	RCCGGY	1 cut(s)	464
Csp6I	GTAC	1 cut(s)	14
CviAII	CATG	5 cut(s)	86, 112, 242, 380, 446
CviJI	RGCY	4 cut(s)	83, 263, 402, 468
CviKI_1	RGCY	4 cut(s)	83, 263, 402, 468
CviQI	GTAC	1 cut(s)	14
DpnI	GATC	2 cut(s)	63, 450
DpnII	GATC	2 cut(s)	61, 448
EciI	GGCGGA	1 cut(s)	415
Eco24I	GRGCYC	1 cut(s)	85
Eco31I	GGTCTC	1 cut(s)	427
Eco57I	CTGAAG	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	85
FaeI	CATG	5 cut(s)	89, 115, 245, 383, 449
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	5 cut(s)	85, 111, 241, 379, 445
FauNDI	CATATG	1 cut(s)	7
FokI	GGATG	1 cut(s)	213
FriOI	GRGCYC	1 cut(s)	85
FspBI	CTAG	3 cut(s)	65, 141, 288
HapII	CCGG	1 cut(s)	465
Hin1II	CATG	5 cut(s)	89, 115, 245, 383, 449
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	3 cut(s)	313, 363, 376
HpaII	CCGG	1 cut(s)	465
Hpy166II	GTNNAC	2 cut(s)	109, 333
Hpy188III	TCNNGA	3 cut(s)	20, 242, 380
Hpy8I	GTNNAC	2 cut(s)	109, 333
HpyAV	CCTTC	3 cut(s)	47, 327, 341
HpyCH4V	TGCA	6 cut(s)	45, 115, 151, 182, 223, 441
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
Hsp92II	CATG	5 cut(s)	89, 115, 245, 383, 449
Kzo9I	GATC	2 cut(s)	61, 448
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	5 cut(s)	31, 33, 183, 442, 478
LweI	GCATC	2 cut(s)	232, 373
MaeI	CTAG	3 cut(s)	65, 141, 288
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	2 cut(s)	63, 450
MboI	GATC	2 cut(s)	61, 448
MboII	GAAGA	2 cut(s)	62, 154
MhlI	GDGCHC	1 cut(s)	85
MluCI	AATT	3 cut(s)	29, 120, 218
MmeI	TCCRAC	1 cut(s)	257
MnlI	CCTC	2 cut(s)	366, 470
MseI	TTAA	2 cut(s)	36, 357
MslI	CAYNNNNRTG	2 cut(s)	246, 450
MspI	CCGG	1 cut(s)	465
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeI	CATATG	1 cut(s)	7
NdeII	GATC	2 cut(s)	61, 448
NlaIII	CATG	5 cut(s)	89, 115, 245, 383, 449
NlaIV	GGNNCC	1 cut(s)	410
NmuCI	GTSAC	1 cut(s)	205
NspI	RCATGY	1 cut(s)	115
PagI	TCATGA	2 cut(s)	241, 379
PfeI	GAWTC	3 cut(s)	313, 363, 376
PspN4I	GGNNCC	1 cut(s)	410
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
RseI	CAYNNNNRTG	2 cut(s)	246, 450
SaqAI	TTAA	2 cut(s)	36, 357
Sau3AI	GATC	2 cut(s)	61, 448
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	3 cut(s)	58, 344, 481
SfaNI	GCATC	2 cut(s)	232, 373
SmiMI	CAYNNNNRTG	2 cut(s)	246, 450
SpeI	ACTAGT	1 cut(s)	140
Sse9I	AATT	3 cut(s)	29, 120, 218
SsiI	CCGC	2 cut(s)	351, 426
SspMI	CTAG	3 cut(s)	65, 141, 288
TasI	AATT	3 cut(s)	29, 120, 218
TatI	WGTACW	1 cut(s)	13
TfiI	GAWTC	3 cut(s)	313, 363, 376
Tru1I	TTAA	2 cut(s)	36, 357
Tru9I	TTAA	2 cut(s)	36, 357
TseFI	GTSAC	1 cut(s)	205
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	1 cut(s)	61
XceI	RCATGY	1 cut(s)	115
XspI	CTAG	3 cut(s)	65, 141, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.