FvH4_4g04240

Aminotransferase class-V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0002899
Physical Location & Seq
Reverse (-)
3655526 .. 3656470
945 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g04240.t1

Sequence Viewer

Length: 762 bp
ATGAAAGGGGATGCTGTCATCACACTGCAGTGTGCTTATGGCGCGGTGAAGAACTCCATTAAGGCCTATTTTGAGCGAGCTGGCGGGGAAGAAGGTGTTGATCAAGTTTTCATAGATGGGGCTCATGGTGTTGGGTGTGTAGATGTTGATATGCAAGAAATAGGGGCAGATTTTTACATTAGTAATTTGCACAAGTGGTTCGTCTGCCCTGCTTCGGTTGCATTTCTGTATTGTAGGAAGTCAGTCACACATTCAGAACTGCATCATCATATGGTGTCTCATGATTATGGTAAAGGGTTGGCTATTGAAAGCTGCTGGATAGGGACTAGGGATTATAGTCCTTTAGTAGTTCCTTCAGCTGTGGAGTTCACAAACAGATTTGAAGGCGGTATCGATGGAATCAAAAGGAGGAATCATGATTCTGTTGTTGAGAAGGGAAAGATGTTGGCAAAGGCTTGGGGAACCAATCTTGGGTCTCCACCGGATATGTGTGCAAGCATGATCATGGTGGGAATGCCGGCTTATTTGGGGGTTTCAAGTGACGATGATGCCTTGAAATTAAGGACACATCTGAGGGAGAAATTTAGTGTTGAAGTACCAATATATTACCGAATGCCGAAGCATGAAGAGGTTGCAAAAACAACAACTGCGTATGCTCGAGTTTCTCATCAAGTCTACAACAAAGTTGATGACTATTATAAGTTCAGAGATGCAATCAATCAACTTGTTTGTGATGGGTTCACATGTGCTCGATCTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 map00270
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

254

Amino Acids

28.18

Weight (kDa)

6.4

Isoelectric Point (pI)

33.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 36 - 83 6.4e-06 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 699
AccI GTMKAC 1 cut(s) 675
AccII CGCG 1 cut(s) 44
AciI CCGC 3 cut(s) 44, 84, 387
AcsI RAATTY 1 cut(s) 581
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 1 cut(s) 597
AfiI CCNNNNNNNGG 2 cut(s) 214, 471
AflIII ACRYGT 1 cut(s) 743
AgsI TTSAA 5 cut(s) 308, 383, 537, 556, 593
AleI CACNNNNGTG 1 cut(s) 28
AluBI AGCT 3 cut(s) 80, 312, 359
AluI AGCT 3 cut(s) 80, 312, 359
Alw21I GWGCWC 1 cut(s) 751
Alw26I GTCTC 2 cut(s) 282, 480
Ama87I CYCGRG 1 cut(s) 657
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 1 cut(s) 312
ApoI RAATTY 1 cut(s) 581
AspLEI GCGC 1 cut(s) 44
AsuHPI GGTGA 1 cut(s) 58
AvaI CYCGRG 1 cut(s) 657
BanII GRGCYC 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 751
BbvI GCAGC 1 cut(s) 299
BccI CCATC 3 cut(s) 110, 389, 728
BclI TGATCA 2 cut(s) 100, 501
BcoDI GTCTC 2 cut(s) 282, 480
BfaI CTAG 1 cut(s) 327
BfmI CTRYAG 1 cut(s) 26
BisI GCNGC 1 cut(s) 313
BlsI GCNGC 1 cut(s) 314
BmeT110I CYCGRG 1 cut(s) 657
BmiI GGNNCC 1 cut(s) 463
BmsI GCATC 3 cut(s) 271, 538, 700
Bsa29I ATCGAT 1 cut(s) 393
BsaI GGTCTC 1 cut(s) 480
BsaWI WCCGGW 1 cut(s) 481
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 471
Bse118I RCCGGY 1 cut(s) 517
BseCI ATCGAT 1 cut(s) 393
BseGI GGATG 1 cut(s) 16
BseLI CCNNNNNNNGG 2 cut(s) 214, 471
BseMII CTCAG 1 cut(s) 563
BseXI GCAGC 1 cut(s) 299
Bsh1236I CGCG 1 cut(s) 44
BshFI GGCC 1 cut(s) 65
BshVI ATCGAT 1 cut(s) 393
BsiHKAI GWGCWC 1 cut(s) 751
BsiHKCI CYCGRG 1 cut(s) 657
BsiSI CCGG 2 cut(s) 482, 518
BslFI GGGAC 1 cut(s) 337
BslI CCNNNNNNNGG 2 cut(s) 214, 471
BsmAI GTCTC 2 cut(s) 282, 480
BsmFI GGGAC 1 cut(s) 337
BsmI GAATGC 2 cut(s) 519, 618
BsnI GGCC 1 cut(s) 65
Bso31I GGTCTC 1 cut(s) 480
BsoBI CYCGRG 1 cut(s) 657
Bsp1286I GDGCHC 2 cut(s) 124, 751
Bsp143I GATC 3 cut(s) 100, 501, 752
BspACI CCGC 3 cut(s) 44, 84, 387
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 564
BspDI ATCGAT 1 cut(s) 393
BspFNI CGCG 1 cut(s) 44
BspHI TCATGA 2 cut(s) 280, 415
BspLI GGNNCC 1 cut(s) 463
BspMAI CTGCAG 1 cut(s) 30
BspTNI GGTCTC 1 cut(s) 480
BsrFI RCCGGY 1 cut(s) 517
BssAI RCCGGY 1 cut(s) 517
BssMI GATC 3 cut(s) 100, 501, 752
Bst6I CTCTTC 1 cut(s) 621
BstC8I GCNNGC 4 cut(s) 78, 82, 496, 519
BstDEI CTNAG 1 cut(s) 572
BstF5I GGATG 1 cut(s) 16
BstFNI CGCG 1 cut(s) 44
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 3 cut(s) 103, 504, 755
BstMAI GTCTC 2 cut(s) 282, 480
BstMBI GATC 3 cut(s) 100, 501, 752
BstMWI GCNNNNNNNGC 2 cut(s) 41, 218
BstNSI RCATGY 1 cut(s) 747
BstSFI CTRYAG 1 cut(s) 26
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 299
Bsu15I ATCGAT 1 cut(s) 393
BsuRI GGCC 1 cut(s) 65
BsuTUI ATCGAT 1 cut(s) 393
BtsCI GGATG 1 cut(s) 16
BtsI GCAGTG 2 cut(s) 23, 35
BtsIMutI CAGTG 2 cut(s) 23, 35
Cac8I GCNNGC 4 cut(s) 78, 82, 496, 519
CciI TCATGA 2 cut(s) 280, 415
CfoI GCGC 1 cut(s) 44
Cfr10I RCCGGY 1 cut(s) 517
ClaI ATCGAT 1 cut(s) 393
Csp6I GTAC 1 cut(s) 596
CviAII CATG 7 cut(s) 125, 281, 416, 499, 505, 623, 744
CviJI RGCY 8 cut(s) 65, 80, 122, 302, 312, 359, 455, 521
CviKI_1 RGCY 8 cut(s) 65, 80, 122, 302, 312, 359, 455, 521
CviQI GTAC 1 cut(s) 596
DdeI CTNAG 1 cut(s) 572
DpnI GATC 3 cut(s) 102, 503, 754
DpnII GATC 3 cut(s) 100, 501, 752
Eam1104I CTCTTC 1 cut(s) 621
EarI CTCTTC 1 cut(s) 621
Eco147I AGGCCT 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 124
Eco31I GGTCTC 1 cut(s) 480
Eco57I CTGAAG 1 cut(s) 339
Eco88I CYCGRG 1 cut(s) 657
EcoT38I GRGCYC 1 cut(s) 124
FaeI CATG 7 cut(s) 128, 284, 419, 502, 508, 626, 747
FaqI GGGAC 1 cut(s) 337
FatI CATG 7 cut(s) 124, 280, 415, 498, 504, 622, 743
FauI CCCGC 1 cut(s) 77
FauNDI CATATG 1 cut(s) 270
FbaI TGATCA 2 cut(s) 100, 501
FblI GTMKAC 1 cut(s) 675
Fnu4HI GCNGC 1 cut(s) 313
FokI GGATG 1 cut(s) 23
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 1 cut(s) 313
FspBI CTAG 1 cut(s) 327
GlaI GCGC 1 cut(s) 43
GluI GCNGC 1 cut(s) 313
HaeIII GGCC 1 cut(s) 65
HapII CCGG 2 cut(s) 482, 518
HhaI GCGC 1 cut(s) 44
Hin1II CATG 7 cut(s) 128, 284, 419, 502, 508, 626, 747
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HinfI GANTC 3 cut(s) 399, 412, 419
HpaII CCGG 2 cut(s) 482, 518
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 3 cut(s) 369, 676, 741
Hpy188I TCNGA 3 cut(s) 256, 573, 707
Hpy188III TCNNGA 2 cut(s) 281, 416
Hpy8I GTNNAC 3 cut(s) 369, 676, 741
HpyAV CCTTC 4 cut(s) 86, 363, 377, 427
HpyCH4V TGCA 8 cut(s) 28, 154, 190, 221, 262, 494, 635, 713
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 218
HpyF3I CTNAG 1 cut(s) 572
Hsp92II CATG 7 cut(s) 128, 284, 419, 502, 508, 626, 747
HspAI GCGC 1 cut(s) 42
KroI GCCGGC 1 cut(s) 517
KroNI GCCGGC 1 cut(s) 519
Ksp22I TGATCA 2 cut(s) 100, 501
Kzo9I GATC 3 cut(s) 100, 501, 752
LpnPI CCDG 5 cut(s) 66, 222, 301, 495, 531
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 3 cut(s) 271, 538, 700
MaeI CTAG 1 cut(s) 327
MaeIII GTNAC 2 cut(s) 244, 539
MalI GATC 3 cut(s) 102, 503, 754
MboI GATC 3 cut(s) 100, 501, 752
MboII GAAGA 3 cut(s) 61, 101, 638
MhlI GDGCHC 2 cut(s) 124, 751
MluCI AATT 3 cut(s) 184, 557, 581
MnlI CCTC 3 cut(s) 402, 567, 622
MroNI GCCGGC 1 cut(s) 517
MseI TTAA 2 cut(s) 60, 560
MslI CAYNNNNRTG 3 cut(s) 28, 285, 503
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 2 cut(s) 482, 518
Mva1269I GAATGC 2 cut(s) 519, 618
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 2 cut(s) 41, 218
NaeI GCCGGC 1 cut(s) 519
NdeI CATATG 1 cut(s) 270
NdeII GATC 3 cut(s) 100, 501, 752
NgoMIV GCCGGC 1 cut(s) 517
NlaIII CATG 7 cut(s) 128, 284, 419, 502, 508, 626, 747
NlaIV GGNNCC 1 cut(s) 463
NmuCI GTSAC 2 cut(s) 244, 539
NspI RCATGY 1 cut(s) 747
OliI CACNNNNGTG 1 cut(s) 28
PaeR7I CTCGAG 1 cut(s) 657
PagI TCATGA 2 cut(s) 280, 415
PceI AGGCCT 1 cut(s) 65
PciI ACATGT 1 cut(s) 743
PctI GAATGC 2 cut(s) 519, 618
PdiI GCCGGC 1 cut(s) 519
PfeI GAWTC 3 cut(s) 399, 412, 419
PkrI GCNGC 1 cut(s) 314
PscI ACATGT 1 cut(s) 743
PsiI TTATAA 1 cut(s) 699
PspN4I GGNNCC 1 cut(s) 463
PspXI VCTCGAGB 1 cut(s) 657
PstI CTGCAG 1 cut(s) 30
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 1 cut(s) 597
RsaNI GTAC 1 cut(s) 596
RseI CAYNNNNRTG 3 cut(s) 28, 285, 503
SaqAI TTAA 2 cut(s) 60, 560
SatI GCNGC 1 cut(s) 313
Sau3AI GATC 3 cut(s) 100, 501, 752
SduI GDGCHC 2 cut(s) 124, 751
SetI ASST 5 cut(s) 82, 97, 314, 361, 633
SfaNI GCATC 3 cut(s) 271, 538, 700
SfcI CTRYAG 1 cut(s) 26
Sfr274I CTCGAG 1 cut(s) 657
SlaI CTCGAG 1 cut(s) 657
SmiMI CAYNNNNRTG 3 cut(s) 28, 285, 503
SmlI CTYRAG 1 cut(s) 657
SmoI CTYRAG 1 cut(s) 657
Sse9I AATT 3 cut(s) 184, 557, 581
SseBI AGGCCT 1 cut(s) 65
SsiI CCGC 3 cut(s) 44, 84, 387
SspMI CTAG 1 cut(s) 327
StuI AGGCCT 1 cut(s) 65
TaqI TCGA 3 cut(s) 393, 658, 751
TasI AATT 3 cut(s) 184, 557, 581
TfiI GAWTC 3 cut(s) 399, 412, 419
Tru1I TTAA 2 cut(s) 60, 560
Tru9I TTAA 2 cut(s) 60, 560
TscAI CASTG 2 cut(s) 30, 35
TseFI GTSAC 2 cut(s) 244, 539
TseI GCWGC 1 cut(s) 312
Tsp45I GTSAC 2 cut(s) 244, 539
TspDTI ATGAA 3 cut(s) 17, 100, 639
TspRI CASTG 2 cut(s) 30, 35
XapI RAATTY 1 cut(s) 581
XceI RCATGY 1 cut(s) 747
XhoI CTCGAG 1 cut(s) 657
XmiI GTMKAC 1 cut(s) 675
XspI CTAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.