Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002899

Physical Location & Seq

Genomic Coordinates Reverse (-)

5004804 .. 5006675

Gene Structure 1872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g08442.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGCTTGCAGGATAATCATGTTTTACAGGTATTATGTTCCTCATCTGTTTCTTCGTCATCAGAATATCCAAATCTTGAATCCCAAGCTTTCATTTCATCTTTCAAAGGCATCTTCATACCACTATTACCCTACTGTTACCCAAACCAATTTCCCCATCAAGCCAAAACTCTCTTCCTTCATTACAGACTCTGAAATCCAAACTGAATTCTCTCACCATGATCCAGGTGTTGCCCGAATAAACAATGGCAGCTTTGGTTGCTCCCCTGCTTCTGTTACCTCTGCATTGCAACAATGGCAACTCAATTGGCTGCGCCAGCCGGACCGTTTCTACTTCAATGAGCTCCACAAGGGGATACTCAAGTCAAGGAACACAGTTAAAGACCTCATCAATGCAGAGGATGTTGATGAAATTTCCATTGTAGATAATGCCACCACAGCAGTTGCCATAGTCTTGCATCAGATGCAGTGGGCCTTCTCTGAAGGCAGATTCAAGAAAGGGGATGCTGTCATCACACTGCAGTATGCTTATGGCGCGGTGAAGAACTCCATCAAGGCCTATTTTGAGCGAGCTGGCGGGGAAGAAGGTGTTGATCAAGTTTTCATAGATGGGGCTCATGGTGTTGGGTGTGTAGATGTTGATATGCAAGAAATAGGGGCAGATTTTTACACTAGTAATTTGCACAAGTGGTTCTTCTGCCCTGCTTCGGTTGCATTTCTGTATTGTAGGAAGTCAGTCACACATTCAGAACTGCATCATCCTATGGTGTCTCATGATTATGGTAAAGGGTTGGCTATTGAAAGCTGCTGGATAGGGACTAGGGATTATAGTCCTTCTTTAGTGGTTCCTTCAGCTGTGGAGTTCACAAACAGGTTTGAAGGCGGTATCGATGGAATCAAAAGGAGGAATCATGATGCTGTTGTTGAGATGGGACAGATGTTGGCAAAGGCTTGGGGAACCAATCTTGGGTCTCCACCGGATATGTGTCCAAGCATGATCATGGTGGGAATGCCGGCTTGTTTGGGGGTTTCAAGTGATGATGATGCCTTGAAATTAAGGACACATCTGAGGGAGAAATTTGGTGTTGAAGTCCCAATATATTACCGAATGCCGAAGCATGAAGAGGTTGCAACAGCAACAACTGCGTATGCTCGAGTTTCTCATCAAGTCTACAACAAAGTTGATGACTATTATAAGTTCAGAGATGCAATCAATCAACTTGTTTGTGATGGGTTCACCTGTGCTCGATCTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

419

Amino Acids

47.17

Weight (kDa)

6.65

Isoelectric Point (pI)

38.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62130 AT3G62130
fragaria_vesca	FvH4_4g04240 FvH4_6g08442 FvH4_6g08442 FvH4_6g08590 FvH4_6g34050 FvH4_7g09780
malus_domestica	MD12G1200200.v1.1
prunus_persica	Prupe.6G305000_v2.0.a1 Prupe.6G305100_v2.0.a1 Prupe.6G305200_v2.0.a1 Prupe.6G305300_v2.0.a1 Prupe.6G305300_v2.0.a1
pyrus_communis	pycom12g18680
rosa_chinensis	RchiOBHm_Chr2g0123491 RchiOBHm_Chr2g0123501 RchiOBHm_Chr2g0123511 RchiOBHm_Chr3g0458441
rosa_laevigata	RLG00000015569 RLG00000015570 RLG00000025157
rosa_multiflora	Rmu_sc0013809.1_g000004 Rmu_sc0017098.1_g000006 Rmu_sc0017098.1_g000007 Rmu_ssc0000091.1_g000003
rosa_rugosa	Rorug03G0028400 Rorug03G0028700
rosa_samantha	Rh2AG304800 Rh2BG312900 Rh2BG313000 Rh2CG291300 Rh2DG328800 Rh3BG090600 Rh3DG091400
rosa_wichuraiana	Rw0G018550 Rw2G024430 Rw3G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1194
AccI	GTMKAC	1 cut(s)	1170
AccII	CGCG	1 cut(s)	536
AciI	CCGC	3 cut(s)	536, 576, 882
AclWI	GGATC	1 cut(s)	215
AcsI	RAATTY	3 cut(s)	206, 411, 1076
AcuI	CTGAAG	2 cut(s)	501, 834
AfiI	CCNNNNNNNGG	2 cut(s)	706, 966
AgsI	TTSAA	9 cut(s)	79, 105, 337, 493, 800, 878, 1032, 1051, 1088
AhlI	ACTAGT	1 cut(s)	671
AjnI	CCWGG	1 cut(s)	223
AjuI	GAANNNNNNNTTGG	2 cut(s)	157, 189
AluBI	AGCT	6 cut(s)	88, 252, 343, 572, 804, 854
AluI	AGCT	6 cut(s)	88, 252, 343, 572, 804, 854
Alw21I	GWGCWC	2 cut(s)	345, 1246
Alw26I	GTCTC	2 cut(s)	774, 975
AlwI	GGATC	1 cut(s)	215
AlwNI	CAGNNNCTG	1 cut(s)	191
Ama87I	CYCGRG	1 cut(s)	1152
AoxI	GGCC	2 cut(s)	471, 555
ApeKI	GCWGC	3 cut(s)	249, 310, 804
ApoI	RAATTY	3 cut(s)	206, 411, 1076
AspLEI	GCGC	2 cut(s)	315, 536
AspS9I	GGNCC	2 cut(s)	322, 471
AsuHPI	GGTGA	3 cut(s)	206, 550, 1228
AvaI	CYCGRG	1 cut(s)	1152
AvaII	GGWCC	1 cut(s)	322
BaeI	ACNNNNGTAYC	2 cut(s)	347, 380
BanII	GRGCYC	2 cut(s)	345, 616
Bbv12I	GWGCWC	2 cut(s)	345, 1246
BbvI	GCAGC	3 cut(s)	261, 297, 791
BccI	CCATC	6 cut(s)	164, 557, 602, 884, 922, 1223
BciT130I	CCWGG	1 cut(s)	225
BciVI	GTATCC	1 cut(s)	348
BclI	TGATCA	2 cut(s)	592, 996
BcoDI	GTCTC	2 cut(s)	774, 975
BcuI	ACTAGT	1 cut(s)	671
BfaI	CTAG	2 cut(s)	672, 819
BfmI	CTRYAG	1 cut(s)	518
BfuI	GTATCC	1 cut(s)	348
BisI	GCNGC	3 cut(s)	250, 311, 805
BlsI	GCNGC	3 cut(s)	251, 312, 806
Bme1390I	CCNGG	1 cut(s)	225
Bme18I	GGWCC	1 cut(s)	322
BmeT110I	CYCGRG	1 cut(s)	1152
BmgT120I	GGNCC	2 cut(s)	322, 471
BmiI	GGNNCC	2 cut(s)	846, 958
BmrFI	CCNGG	1 cut(s)	225
BmsI	GCATC	8 cut(s)	119, 453, 466, 493, 763, 904, 1033, 1195
BpuEI	CTTGAG	1 cut(s)	344
Bsa29I	ATCGAT	1 cut(s)	888
BsaI	GGTCTC	1 cut(s)	975
BsaWI	WCCGGW	1 cut(s)	976
Bsc4I	CCNNNNNNNGG	2 cut(s)	706, 966
Bse118I	RCCGGY	1 cut(s)	1012
Bse3DI	GCAATG	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	225
BseCI	ATCGAT	1 cut(s)	888
BseGI	GGATG	3 cut(s)	406, 508, 757
BseLI	CCNNNNNNNGG	2 cut(s)	706, 966
BseMI	GCAATG	1 cut(s)	284
BseMII	CTCAG	1 cut(s)	1058
BseXI	GCAGC	3 cut(s)	261, 297, 791
Bsh1236I	CGCG	1 cut(s)	536
BshFI	GGCC	2 cut(s)	473, 557
BshVI	ATCGAT	1 cut(s)	888
BsiHKAI	GWGCWC	2 cut(s)	345, 1246
BsiHKCI	CYCGRG	1 cut(s)	1152
BsiSI	CCGG	3 cut(s)	320, 977, 1013
BslFI	GGGAC	3 cut(s)	829, 945, 1076
BslI	CCNNNNNNNGG	2 cut(s)	706, 966
BsmAI	GTCTC	2 cut(s)	774, 975
BsmFI	GGGAC	3 cut(s)	829, 945, 1076
BsmI	GAATGC	2 cut(s)	1014, 1113
BsnI	GGCC	2 cut(s)	473, 557
Bso31I	GGTCTC	1 cut(s)	975
BsoBI	CYCGRG	1 cut(s)	1152
Bsp1286I	GDGCHC	3 cut(s)	345, 616, 1246
Bsp143I	GATC	4 cut(s)	220, 592, 996, 1247
BspACI	CCGC	3 cut(s)	536, 576, 882
BspANI	GGCC	2 cut(s)	473, 557
BspCNI	CTCAG	1 cut(s)	1059
BspDI	ATCGAT	1 cut(s)	888
BspFNI	CGCG	1 cut(s)	536
BspHI	TCATGA	2 cut(s)	772, 910
BspLI	GGNNCC	2 cut(s)	846, 958
BspMAI	CTGCAG	1 cut(s)	522
BspPI	GGATC	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	975
BsrDI	GCAATG	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	1012
BssAI	RCCGGY	1 cut(s)	1012
BssMI	GATC	4 cut(s)	220, 592, 996, 1247
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	3 cut(s)	136, 326, 376
Bst6I	CTCTTC	2 cut(s)	178, 1116
BstAPI	GCANNNNNTGC	2 cut(s)	463, 1142
BstC8I	GCNNGC	5 cut(s)	7, 317, 570, 574, 1014
BstDEI	CTNAG	1 cut(s)	1067
BstF5I	GGATG	3 cut(s)	406, 508, 757
BstFNI	CGCG	1 cut(s)	536
BstHHI	GCGC	2 cut(s)	315, 536
BstKTI	GATC	4 cut(s)	223, 595, 999, 1250
BstMAI	GTCTC	2 cut(s)	774, 975
BstMBI	GATC	4 cut(s)	220, 592, 996, 1247
BstMWI	GCNNNNNNNGC	8 cut(s)	258, 295, 316, 437, 463, 533, 710, 1142
BstNI	CCWGG	1 cut(s)	225
BstSCI	CCNGG	1 cut(s)	223
BstSFI	CTRYAG	1 cut(s)	518
BstUI	CGCG	1 cut(s)	536
BstV1I	GCAGC	3 cut(s)	261, 297, 791
Bsu15I	ATCGAT	1 cut(s)	888
BsuI	GTATCC	1 cut(s)	348
BsuRI	GGCC	2 cut(s)	473, 557
BsuTUI	ATCGAT	1 cut(s)	888
BtsCI	GGATG	3 cut(s)	406, 508, 757
BtsI	GCAGTG	2 cut(s)	473, 515
BtsIMutI	CAGTG	2 cut(s)	473, 515
Cac8I	GCNNGC	5 cut(s)	7, 317, 570, 574, 1014
CaiI	CAGNNNCTG	1 cut(s)	191
CciI	TCATGA	2 cut(s)	772, 910
CfoI	GCGC	2 cut(s)	315, 536
Cfr10I	RCCGGY	1 cut(s)	1012
Cfr13I	GGNCC	2 cut(s)	322, 471
ClaI	ATCGAT	1 cut(s)	888
CpoI	CGGWCCG	1 cut(s)	322
CspCI	CAANNNNNGTGG	2 cut(s)	424, 459
CspI	CGGWCCG	1 cut(s)	322
CviAII	CATG	8 cut(s)	19, 218, 617, 773, 911, 994, 1000, 1118
DdeI	CTNAG	1 cut(s)	1067
DpnI	GATC	4 cut(s)	222, 594, 998, 1249
DpnII	GATC	4 cut(s)	220, 592, 996, 1247
Eam1104I	CTCTTC	2 cut(s)	178, 1116
EarI	CTCTTC	2 cut(s)	178, 1116
Ecl136II	GAGCTC	1 cut(s)	343
Eco147I	AGGCCT	1 cut(s)	557
Eco24I	GRGCYC	2 cut(s)	345, 616
Eco31I	GGTCTC	1 cut(s)	975
Eco47I	GGWCC	1 cut(s)	322
Eco53kI	GAGCTC	1 cut(s)	343
Eco57I	CTGAAG	2 cut(s)	501, 834
Eco88I	CYCGRG	1 cut(s)	1152
EcoICRI	GAGCTC	1 cut(s)	343
EcoRI	GAATTC	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	223
EcoT38I	GRGCYC	2 cut(s)	345, 616
FaeI	CATG	8 cut(s)	22, 221, 620, 776, 914, 997, 1003, 1121
FalI	AAGNNNNNCTT	2 cut(s)	677, 709
FaqI	GGGAC	3 cut(s)	829, 945, 1076
FatI	CATG	8 cut(s)	18, 217, 616, 772, 910, 993, 999, 1117
FauI	CCCGC	1 cut(s)	569
FbaI	TGATCA	2 cut(s)	592, 996
FblI	GTMKAC	1 cut(s)	1170
Fnu4HI	GCNGC	3 cut(s)	250, 311, 805
FokI	GGATG	3 cut(s)	413, 515, 744
FriOI	GRGCYC	2 cut(s)	345, 616
Fsp4HI	GCNGC	3 cut(s)	250, 311, 805
FspBI	CTAG	2 cut(s)	672, 819
GlaI	GCGC	2 cut(s)	314, 535
GluI	GCNGC	3 cut(s)	250, 311, 805
HaeIII	GGCC	2 cut(s)	473, 557
HapII	CCGG	3 cut(s)	320, 977, 1013
HhaI	GCGC	2 cut(s)	315, 536
Hin1II	CATG	8 cut(s)	22, 221, 620, 776, 914, 997, 1003, 1121
Hin6I	GCGC	2 cut(s)	313, 534
HinP1I	GCGC	2 cut(s)	313, 534
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	5 cut(s)	79, 188, 489, 894, 907
HpaII	CCGG	3 cut(s)	320, 977, 1013
HphI	GGTGA	3 cut(s)	206, 550, 1228
Hpy166II	GTNNAC	3 cut(s)	864, 1171, 1236
Hpy188I	TCNGA	7 cut(s)	63, 193, 462, 481, 748, 1068, 1202
Hpy188III	TCNNGA	4 cut(s)	76, 493, 773, 911
Hpy8I	GTNNAC	3 cut(s)	864, 1171, 1236
HpyAV	CCTTC	7 cut(s)	187, 476, 484, 578, 843, 858, 872
HpyCH4III	ACNGT	3 cut(s)	136, 326, 376
HpyF10VI	GCNNNNNNNGC	8 cut(s)	258, 295, 316, 437, 463, 533, 710, 1142
HpyF3I	CTNAG	1 cut(s)	1067
Hsp92II	CATG	8 cut(s)	22, 221, 620, 776, 914, 997, 1003, 1121
HspAI	GCGC	2 cut(s)	313, 534
KroI	GCCGGC	1 cut(s)	1012
KroNI	GCCGGC	1 cut(s)	1014
Ksp22I	TGATCA	2 cut(s)	592, 996
Kzo9I	GATC	4 cut(s)	220, 592, 996, 1247
LmnI	GCTCC	2 cut(s)	266, 348
Lsp1109I	GCAGC	3 cut(s)	261, 297, 791
LweI	GCATC	8 cut(s)	119, 453, 466, 493, 763, 904, 1033, 1195
MaeI	CTAG	2 cut(s)	672, 819
MaeIII	GTNAC	3 cut(s)	136, 274, 736
MalI	GATC	4 cut(s)	222, 594, 998, 1249
MboI	GATC	4 cut(s)	220, 592, 996, 1247
MboII	GAAGA	7 cut(s)	44, 105, 165, 553, 593, 685, 1133
MfeI	CAATTG	1 cut(s)	304
MhlI	GDGCHC	3 cut(s)	345, 616, 1246
MluCI	AATT	7 cut(s)	148, 206, 304, 411, 676, 1052, 1076
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	7 cut(s)	51, 289, 391, 395, 897, 1062, 1117
MroNI	GCCGGC	1 cut(s)	1012
MseI	TTAA	2 cut(s)	378, 1055
MslI	CAYNNNNRTG	2 cut(s)	777, 998
MspA1I	CMGCKG	1 cut(s)	854
MspI	CCGG	3 cut(s)	320, 977, 1013
MspR9I	CCNGG	1 cut(s)	225
MunI	CAATTG	1 cut(s)	304
Mva1269I	GAATGC	2 cut(s)	1014, 1113
MvaI	CCWGG	1 cut(s)	225
MvnI	CGCG	1 cut(s)	536
MwoI	GCNNNNNNNGC	8 cut(s)	258, 295, 316, 437, 463, 533, 710, 1142
NaeI	GCCGGC	1 cut(s)	1014
NdeII	GATC	4 cut(s)	220, 592, 996, 1247
NgoMIV	GCCGGC	1 cut(s)	1012
NlaIII	CATG	8 cut(s)	22, 221, 620, 776, 914, 997, 1003, 1121
NlaIV	GGNNCC	2 cut(s)	846, 958
NmuCI	GTSAC	1 cut(s)	736
PaeR7I	CTCGAG	1 cut(s)	1152
PagI	TCATGA	2 cut(s)	772, 910
PceI	AGGCCT	1 cut(s)	557
PctI	GAATGC	2 cut(s)	1014, 1113
PdiI	GCCGGC	1 cut(s)	1014
PfeI	GAWTC	4 cut(s)	79, 489, 894, 907
PkrI	GCNGC	3 cut(s)	251, 312, 806
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
PsiI	TTATAA	1 cut(s)	1194
Psp124BI	GAGCTC	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	2 cut(s)	846, 958
PspPI	GGNCC	2 cut(s)	322, 471
PspXI	VCTCGAGB	1 cut(s)	1152
PstI	CTGCAG	1 cut(s)	522
PstNI	CAGNNNCTG	1 cut(s)	191
PvuII	CAGCTG	1 cut(s)	854
RseI	CAYNNNNRTG	2 cut(s)	777, 998
Rsr2I	CGGWCCG	1 cut(s)	322
RsrII	CGGWCCG	1 cut(s)	322
SacI	GAGCTC	1 cut(s)	345
SaqAI	TTAA	2 cut(s)	378, 1055
SatI	GCNGC	3 cut(s)	250, 311, 805
Sau3AI	GATC	4 cut(s)	220, 592, 996, 1247
Sau96I	GGNCC	2 cut(s)	322, 471
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	225
SduI	GDGCHC	3 cut(s)	345, 616, 1246
SfaNI	GCATC	8 cut(s)	119, 453, 466, 493, 763, 904, 1033, 1195
SfcI	CTRYAG	1 cut(s)	518
Sfr274I	CTCGAG	1 cut(s)	1152
SinI	GGWCC	1 cut(s)	322
SlaI	CTCGAG	1 cut(s)	1152
SmiMI	CAYNNNNRTG	2 cut(s)	777, 998
SmlI	CTYRAG	2 cut(s)	359, 1152
SmoI	CTYRAG	2 cut(s)	359, 1152
SpeI	ACTAGT	1 cut(s)	671
Sse9I	AATT	7 cut(s)	148, 206, 304, 411, 676, 1052, 1076
SseBI	AGGCCT	1 cut(s)	557
SsiI	CCGC	3 cut(s)	536, 576, 882
SspMI	CTAG	2 cut(s)	672, 819
SstI	GAGCTC	1 cut(s)	345
StuI	AGGCCT	1 cut(s)	557
StyD4I	CCNGG	1 cut(s)	223
TaaI	ACNGT	3 cut(s)	136, 326, 376
TaqI	TCGA	3 cut(s)	888, 1153, 1246
TasI	AATT	7 cut(s)	148, 206, 304, 411, 676, 1052, 1076
TfiI	GAWTC	4 cut(s)	79, 489, 894, 907
Tru1I	TTAA	2 cut(s)	378, 1055
Tru9I	TTAA	2 cut(s)	378, 1055
TscAI	CASTG	2 cut(s)	473, 522
TseFI	GTSAC	1 cut(s)	736
TseI	GCWGC	3 cut(s)	249, 310, 804
Tsp45I	GTSAC	1 cut(s)	736
TspDTI	ATGAA	7 cut(s)	81, 86, 105, 169, 423, 592, 1134
TspRI	CASTG	2 cut(s)	473, 522
VpaK11BI	GGWCC	1 cut(s)	322
XapI	RAATTY	3 cut(s)	206, 411, 1076
XhoI	CTCGAG	1 cut(s)	1152
XmiI	GTMKAC	1 cut(s)	1170
XspI	CTAG	2 cut(s)	672, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.