pycom12g18680

Aminotransferase class-V

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
20799094 .. 20800893
1800 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g18680.3

Sequence Viewer

Length: 1461 bp
ATGACAGATTTACTCCTGGAGGTCATGGCGGAGAAGATTATCATGTTTTTCCGTTACTATGTTCCTCGATTCCTCTGCCCCAATCTTTCCTTCCGAATTTCGAGACCCTCTAATCGCCATTACCGTAACCTTAATCATAATGACACCCAAACCCAAGTCTCCGTTAAGCCGAAACCCTCTTCCTTCATCACAGACACCGAAATCCAATCTGAATTCTCCCACCATGCTCCCGGCATTGCCAGGATCAACAATGGCAGCTTTGGTTGCTGCCCTGCCTCCGTCATCTCTTCCTTGCACCAATGGCAGCTCAAATTGCTCCGCCAGCCCGACGACTTCTACTTGAACGAGCTTCCAAATAGGATACTTGAATCGAGAACAGTAATCAAAGATCTCATAAATGCAGAAGATGCGGAGGAAGTCTCCATTGTGGATAATGTCAGCACTGCTGTTGCTATAGTCCTGAAGCAGACGGCATGGTCTTTCGTGGAAGGGAAATTCGACAAAGGAGATGCTGTCATCATGTTTCGCTGCACTTATGGGGCGGTGAAGAACTCAATCAAGGCCTATTTTTTGCGCGCTGGTGGGTATGCGATCGAAGTTCCATTTAATTTTCCGGTGACTTCAAACGAGGAAATCGTGAGTGAATTCAAGACAGCTTTGAGGAGAGAAAAGGGTATTGGGAGGAGAGTGAGACTGGCGGTGATTGATCACGTTACTTGCATGCCAAGCTTTGTGATGCCGGTTAAGGAATTGGTTAAAATTTGCAAGGAAGAAGGCGTTGAGCAAGTTTTAGTTGATGCAGCTCATGCTGTTGGGTGTGTAGATGTGGACATGAACGAAATCACAGCGGATTTTTACACAGGTAATTTGTACAAGTGGTTTTTCTGCCCGCCTGCGGTTGCTTTCTTGTACTGCAGGAAATCAGTTATGACACATTTAGATTTGCATCATCCTGTTGTGTCTCATGACTATGGAAACGGATTGGTCAAAGAAACCGGTTGGGTTGGGACGAGGGATTATAGTCCCTATCTCGTTCTTCCTTCGGTTATGGAGTTTGTCAACAGATTCGAAGGCGGTGCAGAGGGAATCAGGAACCGGAATCATGATGCTGTTGTTGAGATGGGGAAGATGCTTGCAGAAGCTTGGGGAACCAATCTAGGGTGTCCACTGGAAATGTGTTCGAGCATGGTGATGGTTGGATTGCCGGCCTGTTTAGGGGTTCTGAGTGATGAAGATGCTATGAAGTTGTGGGAACTTCTGTGCAAGAAATTTGGTGTGGAAGTGAAAATACATTATCAAAACCCGAAAGATGGAGAGCTTGCACCTATAACTGGGTACGTTCGAATCTGCCACCAAATTTACAACAAATTTGAGGACTATTGCAGGCTCAGAGACGCAATCAACCAACTCGTTCGCGATGGCTTCAATTGCGGTAATCTTGAGATATGTGGGACCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

487

Amino Acids

54.91

Weight (kDa)

6.13

Isoelectric Point (pI)

36.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 475
AccII CGCG 2 cut(s) 576, 1416
AclWI GGATC 1 cut(s) 251
AcsI RAATTY 8 cut(s) 96, 212, 494, 644, 759, 1268, 1356, 1367
AcuI CTGAAG 1 cut(s) 482
AfaI GTAC 3 cut(s) 872, 911, 1337
AfiI CCNNNNNNNGG 5 cut(s) 895, 1158, 1215, 1310, 1331
AgeI ACCGGT 1 cut(s) 995
AgsI TTSAA 5 cut(s) 343, 368, 624, 649, 1426
AjnI CCWGG 2 cut(s) 15, 239
AjuI GAANNNNNNNTTGG 4 cut(s) 74, 106, 660, 692
AluBI AGCT 8 cut(s) 258, 307, 349, 656, 729, 803, 1142, 1318
AluI AGCT 8 cut(s) 258, 307, 349, 656, 729, 803, 1142, 1318
Alw26I GTCTC 6 cut(s) 97, 163, 424, 685, 966, 1386
AlwI GGATC 1 cut(s) 251
AoxI GGCC 2 cut(s) 561, 1206
ApeKI GCWGC 5 cut(s) 255, 267, 304, 528, 800
ApoI RAATTY 8 cut(s) 96, 212, 494, 644, 759, 1268, 1356, 1367
AsiGI ACCGGT 1 cut(s) 995
AspLEI GCGC 2 cut(s) 576, 578
AspS9I GGNCC 1 cut(s) 1452
AsuC2I CCSGG 1 cut(s) 231
AsuHPI GGTGA 4 cut(s) 556, 628, 712, 1201
AsuII TTCGAA 2 cut(s) 1068, 1342
AvaII GGWCC 1 cut(s) 1452
BarI GAAGNNNNNNTAC 2 cut(s) 1272, 1304
BbvI GCAGC 5 cut(s) 254, 267, 316, 515, 812
BccI CCATC 4 cut(s) 1114, 1186, 1304, 1412
BceAI ACGGC 1 cut(s) 486
BcgI CGANNNNNNTGC 4 cut(s) 57, 91, 1058, 1092
BciT130I CCWGG 2 cut(s) 17, 241
BciVI GTATCC 1 cut(s) 354
BclI TGATCA 1 cut(s) 706
BcnI CCSGG 1 cut(s) 231
BcoDI GTCTC 6 cut(s) 97, 163, 424, 685, 966, 1386
BfaI CTAG 2 cut(s) 1157, 1459
BfmI CTRYAG 2 cut(s) 453, 913
BfuI GTATCC 1 cut(s) 354
BglII AGATCT 1 cut(s) 388
BisI GCNGC 5 cut(s) 256, 268, 305, 529, 801
BlsI GCNGC 5 cut(s) 257, 269, 306, 530, 802
Bme1390I CCNGG 3 cut(s) 17, 231, 241
Bme18I GGWCC 1 cut(s) 1452
BmgT120I GGNCC 1 cut(s) 1452
BmiI GGNNCC 4 cut(s) 1094, 1150, 1453, 1454
BmrFI CCNGG 3 cut(s) 17, 231, 241
BmrI ACTGGG 1 cut(s) 1341
BmsI GCATC 8 cut(s) 397, 499, 726, 787, 955, 1096, 1119, 1225
BmuI ACTGGG 1 cut(s) 1341
BplI GAGNNNNNCTC 2 cut(s) 404, 436
BpmI CTGGAG 1 cut(s) 38
Bpu14I TTCGAA 2 cut(s) 1068, 1342
BpuEI CTTGAG 1 cut(s) 1460
BpuMI CCSGG 1 cut(s) 231
BsaBI GATNNNNATC 1 cut(s) 945
BsaI GGTCTC 1 cut(s) 97
BsaWI WCCGGW 3 cut(s) 613, 995, 1095
BsaXI ACNNNNNCTCC 2 cut(s) 498, 528
Bsc4I CCNNNNNNNGG 5 cut(s) 895, 1158, 1215, 1310, 1331
Bse118I RCCGGY 3 cut(s) 739, 995, 1204
Bse1I ACTGG 3 cut(s) 699, 1173, 1336
Bse3DI GCAATG 1 cut(s) 234
Bse8I GATNNNNATC 1 cut(s) 945
BseBI CCWGG 2 cut(s) 17, 241
BseGI GGATG 1 cut(s) 949
BseJI GATNNNNATC 1 cut(s) 945
BseLI CCNNNNNNNGG 5 cut(s) 895, 1158, 1215, 1310, 1331
BseMI GCAATG 1 cut(s) 234
BseMII CTCAG 2 cut(s) 1214, 1402
BseNI ACTGG 3 cut(s) 699, 1173, 1336
BsePI GCGCGC 1 cut(s) 574
BseRI GAGGAG 2 cut(s) 676, 697
BseXI GCAGC 5 cut(s) 254, 267, 316, 515, 812
BsgI GTGCAG 2 cut(s) 514, 1098
Bsh1236I CGCG 2 cut(s) 576, 1416
Bsh1285I CGRYCG 1 cut(s) 594
BshFI GGCC 2 cut(s) 563, 1208
BshTI ACCGGT 1 cut(s) 995
BsiEI CGRYCG 1 cut(s) 594
BsiSI CCGG 6 cut(s) 231, 614, 740, 996, 1096, 1205
BslFI GGGAC 2 cut(s) 1008, 1021
BslI CCNNNNNNNGG 5 cut(s) 895, 1158, 1215, 1310, 1331
BsmAI GTCTC 6 cut(s) 97, 163, 424, 685, 966, 1386
BsmBI CGTCTC 1 cut(s) 1386
BsmFI GGGAC 2 cut(s) 1008, 1021
BsnI GGCC 2 cut(s) 563, 1208
Bso31I GGTCTC 1 cut(s) 97
Bsp119I TTCGAA 2 cut(s) 1068, 1342
Bsp1407I TGTACA 1 cut(s) 870
Bsp143I GATC 4 cut(s) 243, 388, 591, 706
Bsp68I TCGCGA 1 cut(s) 1416
BspANI GGCC 2 cut(s) 563, 1208
BspCNI CTCAG 2 cut(s) 1215, 1401
BspFNI CGCG 2 cut(s) 576, 1416
BspHI TCATGA 2 cut(s) 964, 1102
BspLI GGNNCC 4 cut(s) 1094, 1150, 1453, 1454
BspMAI CTGCAG 1 cut(s) 917
BspPI GGATC 1 cut(s) 251
BspT104I TTCGAA 2 cut(s) 1068, 1342
BspTNI GGTCTC 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 234
BsrFI RCCGGY 3 cut(s) 739, 995, 1204
BsrGI TGTACA 1 cut(s) 870
BsrI ACTGG 3 cut(s) 699, 1173, 1336
BssAI RCCGGY 3 cut(s) 739, 995, 1204
BssHII GCGCGC 1 cut(s) 574
BssMI GATC 4 cut(s) 243, 388, 591, 706
Bst2UI CCWGG 2 cut(s) 17, 241
Bst4CI ACNGT 2 cut(s) 125, 379
Bst6I CTCTTC 2 cut(s) 184, 292
BstAPI GCANNNNNTGC 2 cut(s) 407, 806
BstAUI TGTACA 1 cut(s) 870
BstBI TTCGAA 2 cut(s) 1068, 1342
BstC8I GCNNGC 9 cut(s) 323, 576, 722, 890, 894, 1134, 1206, 1320, 1385
BstDEI CTNAG 2 cut(s) 1223, 1388
BstF5I GGATG 1 cut(s) 949
BstFNI CGCG 2 cut(s) 576, 1416
BstHHI GCGC 2 cut(s) 576, 578
BstKTI GATC 4 cut(s) 246, 391, 594, 709
BstMAI GTCTC 6 cut(s) 97, 163, 424, 685, 966, 1386
BstMBI GATC 4 cut(s) 243, 388, 591, 706
BstMCI CGRYCG 1 cut(s) 594
BstMWI GCNNNNNNNGC 8 cut(s) 264, 301, 313, 322, 407, 726, 806, 1428
BstNI CCWGG 2 cut(s) 17, 241
BstNSI RCATGY 1 cut(s) 724
BstSCI CCNGG 3 cut(s) 15, 229, 239
BstSFI CTRYAG 2 cut(s) 453, 913
BstUI CGCG 2 cut(s) 576, 1416
BstV1I GCAGC 5 cut(s) 254, 267, 316, 515, 812
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
BsuI GTATCC 1 cut(s) 354
BsuRI GGCC 2 cut(s) 563, 1208
BtgZI GCGATG 1 cut(s) 1431
BtsCI GGATG 1 cut(s) 949
BtsI GCAGTG 1 cut(s) 441
BtsIMutI CAGTG 2 cut(s) 441, 1166
BtuMI TCGCGA 1 cut(s) 1416
Cac8I GCNNGC 9 cut(s) 323, 576, 722, 890, 894, 1134, 1206, 1320, 1385
CciI TCATGA 2 cut(s) 964, 1102
CfoI GCGC 2 cut(s) 576, 578
Cfr10I RCCGGY 3 cut(s) 739, 995, 1204
Cfr13I GGNCC 1 cut(s) 1452
CseI GACGC 1 cut(s) 1403
Csp6I GTAC 3 cut(s) 871, 910, 1336
CspAI ACCGGT 1 cut(s) 995
CviQI GTAC 3 cut(s) 871, 910, 1336
DdeI CTNAG 2 cut(s) 1223, 1388
DpnI GATC 4 cut(s) 245, 390, 593, 708
DpnII GATC 4 cut(s) 243, 388, 591, 706
DrdI GACNNNNNNGTC 1 cut(s) 475
DseDI GACNNNNNNGTC 1 cut(s) 475
Eam1104I CTCTTC 2 cut(s) 184, 292
EarI CTCTTC 2 cut(s) 184, 292
EciI GGCGGA 2 cut(s) 44, 308
Eco147I AGGCCT 1 cut(s) 563
Eco31I GGTCTC 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 1452
Eco57I CTGAAG 1 cut(s) 482
EcoO109I RGGNCCY 1 cut(s) 1452
EcoRI GAATTC 2 cut(s) 212, 644
EcoRII CCWGG 2 cut(s) 15, 239
Esp3I CGTCTC 1 cut(s) 1386
FaqI GGGAC 2 cut(s) 1008, 1021
FauI CCCGC 1 cut(s) 897
FbaI TGATCA 1 cut(s) 706
Fnu4HI GCNGC 5 cut(s) 256, 268, 305, 529, 801
FokI GGATG 1 cut(s) 936
Fsp4HI GCNGC 5 cut(s) 256, 268, 305, 529, 801
FspBI CTAG 2 cut(s) 1157, 1459
GlaI GCGC 2 cut(s) 575, 577
GluI GCNGC 5 cut(s) 256, 268, 305, 529, 801
GsuI CTGGAG 1 cut(s) 38
HaeIII GGCC 2 cut(s) 563, 1208
HapII CCGG 6 cut(s) 231, 614, 740, 996, 1096, 1205
HgaI GACGC 1 cut(s) 1403
HhaI GCGC 2 cut(s) 576, 578
Hin6I GCGC 2 cut(s) 574, 576
HinP1I GCGC 2 cut(s) 574, 576
HincII GTYRAC 1 cut(s) 1060
HindII GTYRAC 1 cut(s) 1060
HindIII AAGCTT 2 cut(s) 727, 1140
HinfI GANTC 6 cut(s) 69, 368, 1065, 1086, 1099, 1344
HpaII CCGG 6 cut(s) 231, 614, 740, 996, 1096, 1205
HphI GGTGA 4 cut(s) 556, 628, 712, 1201
Hpy166II GTNNAC 3 cut(s) 829, 1060, 1166
Hpy188I TCNGA 4 cut(s) 95, 211, 1224, 1391
Hpy8I GTNNAC 3 cut(s) 829, 1060, 1166
Hpy99I CGWCG 1 cut(s) 332
HpyAV CCTTC 6 cut(s) 100, 193, 482, 767, 1050, 1064
HpyCH4III ACNGT 2 cut(s) 125, 379
HpyCH4IV ACGT 2 cut(s) 711, 1338
HpyF10VI GCNNNNNNNGC 8 cut(s) 264, 301, 313, 322, 407, 726, 806, 1428
HpyF3I CTNAG 2 cut(s) 1223, 1388
HpySE526I ACGT 2 cut(s) 711, 1338
HspAI GCGC 2 cut(s) 574, 576
KflI GGGWCCC 1 cut(s) 1452
KroI GCCGGC 1 cut(s) 1204
KroNI GCCGGC 1 cut(s) 1206
Ksp22I TGATCA 1 cut(s) 706
Kzo9I GATC 4 cut(s) 243, 388, 591, 706
LmnI GCTCC 2 cut(s) 232, 321
Lsp1109I GCAGC 5 cut(s) 254, 267, 316, 515, 812
LweI GCATC 8 cut(s) 397, 499, 726, 787, 955, 1096, 1119, 1225
MaeI CTAG 2 cut(s) 1157, 1459
MaeII ACGT 2 cut(s) 711, 1338
MaeIII GTNAC 4 cut(s) 53, 125, 616, 712
MalI GATC 4 cut(s) 245, 390, 593, 708
MboI GATC 4 cut(s) 243, 388, 591, 706
MboII GAAGA 9 cut(s) 46, 171, 279, 416, 559, 782, 1028, 1138, 1244
MfeI CAATTG 1 cut(s) 1426
MflI RGATCY 1 cut(s) 388
MmeI TCCRAC 1 cut(s) 1177
MroNI GCCGGC 1 cut(s) 1204
MseI TTAA 5 cut(s) 132, 165, 606, 744, 756
MslI CAYNNNNRTG 2 cut(s) 969, 1190
MspA1I CMGCKG 1 cut(s) 848
MspI CCGG 6 cut(s) 231, 614, 740, 996, 1096, 1205
MspR9I CCNGG 3 cut(s) 17, 231, 241
MunI CAATTG 1 cut(s) 1426
MvaI CCWGG 2 cut(s) 17, 241
MvnI CGCG 2 cut(s) 576, 1416
MwoI GCNNNNNNNGC 8 cut(s) 264, 301, 313, 322, 407, 726, 806, 1428
NaeI GCCGGC 1 cut(s) 1206
NciI CCSGG 1 cut(s) 231
NdeII GATC 4 cut(s) 243, 388, 591, 706
NgoMIV GCCGGC 1 cut(s) 1204
NlaIV GGNNCC 4 cut(s) 1094, 1150, 1453, 1454
NmuCI GTSAC 1 cut(s) 616
NruI TCGCGA 1 cut(s) 1416
NspI RCATGY 1 cut(s) 724
NspV TTCGAA 2 cut(s) 1068, 1342
PaeI GCATGC 1 cut(s) 724
PagI TCATGA 2 cut(s) 964, 1102
PauI GCGCGC 1 cut(s) 574
PceI AGGCCT 1 cut(s) 563
PcsI WCGNNNNNNNCGW 2 cut(s) 121, 633
PdiI GCCGGC 1 cut(s) 1206
PfeI GAWTC 6 cut(s) 69, 368, 1065, 1086, 1099, 1344
PfoI TCCNGGA 1 cut(s) 15
PinAI ACCGGT 1 cut(s) 995
PkrI GCNGC 5 cut(s) 257, 269, 306, 530, 802
Ple19I CGATCG 1 cut(s) 594
PpuMI RGGWCCY 1 cut(s) 1452
Psp5II RGGWCCY 1 cut(s) 1452
Psp6I CCWGG 2 cut(s) 15, 239
PspGI CCWGG 2 cut(s) 15, 239
PspN4I GGNNCC 4 cut(s) 1094, 1150, 1453, 1454
PspPI GGNCC 1 cut(s) 1452
PspPPI RGGWCCY 1 cut(s) 1452
PstI CTGCAG 1 cut(s) 917
PsuI RGATCY 1 cut(s) 388
PteI GCGCGC 1 cut(s) 574
PvuI CGATCG 1 cut(s) 594
RruI TCGCGA 1 cut(s) 1416
RsaI GTAC 3 cut(s) 872, 911, 1337
RsaNI GTAC 3 cut(s) 871, 910, 1336
RseI CAYNNNNRTG 2 cut(s) 969, 1190
SaqAI TTAA 5 cut(s) 132, 165, 606, 744, 756
SatI GCNGC 5 cut(s) 256, 268, 305, 529, 801
Sau3AI GATC 4 cut(s) 243, 388, 591, 706
Sau96I GGNCC 1 cut(s) 1452
ScrFI CCNGG 3 cut(s) 17, 231, 241
SfaNI GCATC 8 cut(s) 397, 499, 726, 787, 955, 1096, 1119, 1225
SfcI CTRYAG 2 cut(s) 453, 913
SfuI TTCGAA 2 cut(s) 1068, 1342
SinI GGWCC 1 cut(s) 1452
SmiMI CAYNNNNRTG 2 cut(s) 969, 1190
SmlI CTYRAG 1 cut(s) 1439
SmoI CTYRAG 1 cut(s) 1439
SphI GCATGC 1 cut(s) 724
SseBI AGGCCT 1 cut(s) 563
SspMI CTAG 2 cut(s) 1157, 1459
StuI AGGCCT 1 cut(s) 563
StyD4I CCNGG 3 cut(s) 15, 229, 239
TaaI ACNGT 2 cut(s) 125, 379
TaiI ACGT 2 cut(s) 714, 1341
TaqI TCGA 8 cut(s) 67, 101, 371, 498, 594, 1068, 1181, 1342
TatI WGTACW 2 cut(s) 870, 909
TfiI GAWTC 6 cut(s) 69, 368, 1065, 1086, 1099, 1344
Tru1I TTAA 5 cut(s) 132, 165, 606, 744, 756
Tru9I TTAA 5 cut(s) 132, 165, 606, 744, 756
TscAI CASTG 2 cut(s) 448, 1173
TseFI GTSAC 1 cut(s) 616
TseI GCWGC 5 cut(s) 255, 267, 304, 528, 800
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 4 cut(s) 175, 848, 1245, 1256
TspGWI ACGGA 4 cut(s) 41, 151, 268, 993
TspRI CASTG 2 cut(s) 448, 1173
VpaK11BI GGWCC 1 cut(s) 1452
XapI RAATTY 8 cut(s) 96, 212, 494, 644, 759, 1268, 1356, 1367
XceI RCATGY 1 cut(s) 724
XspI CTAG 2 cut(s) 1157, 1459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.