Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002899

Physical Location & Seq

Genomic Coordinates Forward (+)

27573925 .. 27576277

Gene Structure 2353 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G305300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

ATGTTTTTTGTTGTGCATGCATTGTTGTGTTTTTTAGTAACGCAGGTCATGGCCGAGAAGATTATTATGTTTTGTCGTTACTATGTTCTACTTATTGTTCTTCTTCCTTATCGAACCCTCCAATTCTTCTACCACAAGCTTTCATTTCAAGTCTCAAGGGCCTCTAACCTAGATGCTGCTGAGGGCATCGAAAACCATGTTCCCATTGAGCCAAAGATCTCTTCTTCCTTCATCACAGACTCCGAAATCCAATCTGAATTTGCTCACCATGCTCCTGGTGTTGCCAGGATGAACAATGGCAGCTTCGGTTGCTGCCCTGCCTCTGTCATCTCTGCCTTGCAACAATGGCAGCTCAAATTGCTCTGCCAACCGGACCATTTCTACTTTAATGAGCTTGAGGACAGGATACTTGAATCAAGATACAAAATCAAAGACCTTATCAACGCAGAAGATGTGGATGAAGTCTCCATTGTAGACAACATCTCCACTGCTGTCGCCATAGTCCTGCAGCAAGCAGCATGGGCCTTTGCTGAAGGGAAATTTAACAAAGGGGATGCTGTCATTATGTTTCACTGCGCTTATGGCGCGGTGAAGAACTCAATCAAGGCCTACTTTTCGCGTGCTGGTGGATATGTTATTGAAGTTCAATTTAATTTTCCATTGAATTCCAATGAAGAAATTATAAGTGAATTTAGCAAGGCATTGGAGAGAGAAAAGGGTAATGGTAGGAGAGTGAGATTGGCTGTGATTGATCATGTCACATGCATGCCAAGTGTTATAATGCCAGTTAAGCAATTGGTTAAAATCTGTAGGGAAGAAGGTGTTGAACAAGTTTTCATAGATGCAGCTCATGGTGTTGGGTGCGTAGATGTTGATATGCAAGAAATTGGGGCAGATTTTTATGCTAGTACTTTGTATAAGTGGTTCTTCTGCCCACCTGCAGCTGCATTTCTGTATTGTAGGAAGTCAGCTACATATTCAGATTTGCAATTGCATCACCCTGTTGTATCTCATAGGTATGGTATGGGGTTGGCTGAAGAAAGTTTTTGGGTTGGGACAAGGGATTATAGTCCATATCTGGTGCTTCCTTCAGCTATGGAGTTCGTTAAGAGGTTCAAAGGCGGTGTTGAGGGAATCATAAAAATGAATCATGATGCTGTTGTTGAGATGGGGAAGATGTTGGCAGAAGCTTGGGGAACCAATCTAGGCTGCCCTCCTGATATGTGTGCTAGCATGATCATGATTGGTTTACCATCTTGTTTGGGGATTTCAAGTGATGATGATACTATGCAGTTATGGGCACATTTACGCGAGAAATTTGGTGTTGAAGTCAGGATACATTATCAAGCTCCCAAAGATGGAGAGGTTGTGTTGACAACGGGGTACGTTCGAATTTGTCATCAGATTTACAACAAAGTTGATGACTATTACAAGCTCAGAGATACAATTAATCAACTCGTTCATGACGGGTTCACTTGCGCTCTTGAGTTCAATGAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

501

Amino Acids

56.41

Weight (kDa)

5.59

Isoelectric Point (pI)

36.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62130 AT3G62130
fragaria_vesca	FvH4_4g04240 FvH4_6g08442 FvH4_6g08442 FvH4_6g08590 FvH4_6g34050 FvH4_7g09780
malus_domestica	MD12G1200200.v1.1
prunus_persica	Prupe.6G305000_v2.0.a1 Prupe.6G305100_v2.0.a1 Prupe.6G305200_v2.0.a1 Prupe.6G305300_v2.0.a1 Prupe.6G305300_v2.0.a1
pyrus_communis	pycom12g18680
rosa_chinensis	RchiOBHm_Chr2g0123491 RchiOBHm_Chr2g0123501 RchiOBHm_Chr2g0123511 RchiOBHm_Chr3g0458441
rosa_laevigata	RLG00000015569 RLG00000015570 RLG00000025157
rosa_multiflora	Rmu_sc0013809.1_g000004 Rmu_sc0017098.1_g000006 Rmu_sc0017098.1_g000007 Rmu_ssc0000091.1_g000003
rosa_rugosa	Rorug03G0028400 Rorug03G0028700
rosa_samantha	Rh2AG304800 Rh2BG312900 Rh2BG313000 Rh2CG291300 Rh2DG328800 Rh3BG090600 Rh3DG091400
rosa_wichuraiana	Rw0G018550 Rw2G024430 Rw3G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	683, 779
AarI	CACCTGC	1 cut(s)	946
Acc36I	ACCTGC	2 cut(s)	34, 946
AccI	GTMKAC	1 cut(s)	474
AccII	CGCG	3 cut(s)	587, 619, 1311
AciI	CCGC	2 cut(s)	587, 1122
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	6 cut(s)	257, 539, 664, 689, 1316, 1392
AcuI	CTGAAG	3 cut(s)	552, 1056, 1074
AfaI	GTAC	2 cut(s)	910, 1385
AfiI	CCNNNNNNNGG	1 cut(s)	1358
AjnI	CCWGG	2 cut(s)	274, 284
AjuI	GAANNNNNNNTTGG	2 cut(s)	205, 237
Alw26I	GTCTC	2 cut(s)	157, 469
AoxI	GGCC	5 cut(s)	51, 159, 522, 606, 1497
ApoI	RAATTY	6 cut(s)	257, 539, 664, 689, 1316, 1392
AseI	ATTAAT	1 cut(s)	1449
AspLEI	GCGC	3 cut(s)	578, 587, 1481
AspS9I	GGNCC	3 cut(s)	159, 373, 522
AsuHPI	GGTGA	3 cut(s)	257, 601, 989
AsuII	TTCGAA	1 cut(s)	1390
AsuNHI	GCTAGC	1 cut(s)	1229
AvaII	GGWCC	1 cut(s)	373
BaeGI	GKGCMC	1 cut(s)	1303
BarI	GAAGNNNNNNTAC	2 cut(s)	1320, 1352
BbvCI	CCTCAGC	1 cut(s)	180
BccI	CCATC	3 cut(s)	1162, 1261, 1352
BciT130I	CCWGG	2 cut(s)	276, 286
BciVI	GTATCC	2 cut(s)	399, 1329
BclI	TGATCA	2 cut(s)	751, 1236
BcoDI	GTCTC	2 cut(s)	157, 469
BfaI	CTAG	4 cut(s)	170, 906, 1205, 1230
BfmI	CTRYAG	3 cut(s)	506, 808, 939
BfuAI	ACCTGC	2 cut(s)	34, 946
BfuI	GTATCC	2 cut(s)	399, 1329
BglII	AGATCT	1 cut(s)	216
BmcAI	AGTACT	1 cut(s)	910
Bme1390I	CCNGG	2 cut(s)	276, 286
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	3 cut(s)	159, 373, 522
BmiI	GGNNCC	1 cut(s)	1198
BmrFI	CCNGG	2 cut(s)	276, 286
BmsI	GCATC	6 cut(s)	163, 195, 544, 832, 1003, 1144
BmtI	GCTAGC	1 cut(s)	1233
Bpu10I	CCTNAGC	1 cut(s)	180
Bpu14I	TTCGAA	1 cut(s)	1390
BpuEI	CTTGAG	2 cut(s)	139, 416
BsaWI	WCCGGW	1 cut(s)	370
BsaXI	ACNNNNNCTCC	4 cut(s)	467, 497, 1353, 1383
Bsc4I	CCNNNNNNNGG	1 cut(s)	1358
Bse1I	ACTGG	1 cut(s)	785
BseBI	CCWGG	2 cut(s)	276, 286
BseGI	GGATG	3 cut(s)	294, 463, 559
BseLI	CCNNNNNNNGG	1 cut(s)	1358
BseMII	CTCAG	2 cut(s)	171, 1450
BseNI	ACTGG	1 cut(s)	785
BseSI	GKGCMC	1 cut(s)	1303
Bsh1236I	CGCG	3 cut(s)	587, 619, 1311
BshFI	GGCC	5 cut(s)	53, 161, 524, 608, 1499
BsiSI	CCGG	1 cut(s)	371
BslFI	GGGAC	1 cut(s)	1069
BslI	CCNNNNNNNGG	1 cut(s)	1358
BsmAI	GTCTC	2 cut(s)	157, 469
BsmFI	GGGAC	1 cut(s)	1069
BsnI	GGCC	5 cut(s)	53, 161, 524, 608, 1499
Bsp119I	TTCGAA	1 cut(s)	1390
Bsp1286I	GDGCHC	1 cut(s)	1303
Bsp143I	GATC	3 cut(s)	216, 751, 1236
BspACI	CCGC	2 cut(s)	587, 1122
BspANI	GGCC	5 cut(s)	53, 161, 524, 608, 1499
BspCNI	CTCAG	2 cut(s)	172, 1449
BspFNI	CGCG	3 cut(s)	587, 619, 1311
BspHI	TCATGA	3 cut(s)	1150, 1239, 1462
BspLI	GGNNCC	1 cut(s)	1198
BspMAI	CTGCAG	2 cut(s)	510, 943
BspMI	ACCTGC	2 cut(s)	34, 946
BspOI	GCTAGC	1 cut(s)	1233
BspT104I	TTCGAA	1 cut(s)	1390
BsrI	ACTGG	1 cut(s)	785
BssMI	GATC	3 cut(s)	216, 751, 1236
Bst2UI	CCWGG	2 cut(s)	276, 286
Bst6I	CTCTTC	1 cut(s)	226
BstBI	TTCGAA	1 cut(s)	1390
BstC8I	GCNNGC	5 cut(s)	18, 513, 621, 767, 1231
BstDEI	CTNAG	2 cut(s)	180, 1436
BstF5I	GGATG	3 cut(s)	294, 463, 559
BstFNI	CGCG	3 cut(s)	587, 619, 1311
BstHHI	GCGC	3 cut(s)	578, 587, 1481
BstKTI	GATC	3 cut(s)	219, 754, 1239
BstMAI	GTCTC	2 cut(s)	157, 469
BstMBI	GATC	3 cut(s)	216, 751, 1236
BstMWI	GCNNNNNNNGC	8 cut(s)	269, 309, 346, 358, 521, 582, 584, 790
BstNI	CCWGG	2 cut(s)	276, 286
BstNSI	RCATGY	3 cut(s)	20, 765, 769
BstSCI	CCNGG	2 cut(s)	274, 284
BstSFI	CTRYAG	3 cut(s)	506, 808, 939
BstSLI	GKGCMC	1 cut(s)	1303
BstUI	CGCG	3 cut(s)	587, 619, 1311
BstX2I	RGATCY	1 cut(s)	216
BstXI	CCANNNNNNTGG	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	216
BsuI	GTATCC	2 cut(s)	399, 1329
BsuRI	GGCC	5 cut(s)	53, 161, 524, 608, 1499
BtsCI	GGATG	3 cut(s)	294, 463, 559
BtsI	GCAGTG	2 cut(s)	486, 571
BtsIMutI	CAGTG	2 cut(s)	486, 571
BveI	ACCTGC	2 cut(s)	34, 946
Cac8I	GCNNGC	5 cut(s)	18, 513, 621, 767, 1231
CciI	TCATGA	3 cut(s)	1150, 1239, 1462
CfoI	GCGC	3 cut(s)	578, 587, 1481
Cfr13I	GGNCC	3 cut(s)	159, 373, 522
Csp6I	GTAC	2 cut(s)	909, 1384
CviQI	GTAC	2 cut(s)	909, 1384
DdeI	CTNAG	2 cut(s)	180, 1436
DpnI	GATC	3 cut(s)	218, 753, 1238
DpnII	GATC	3 cut(s)	216, 751, 1236
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
Eco147I	AGGCCT	2 cut(s)	608, 1499
Eco47I	GGWCC	1 cut(s)	373
Eco57I	CTGAAG	3 cut(s)	552, 1056, 1074
EcoO109I	RGGNCCY	1 cut(s)	159
EcoRI	GAATTC	1 cut(s)	664
EcoRII	CCWGG	2 cut(s)	274, 284
EcoT22I	ATGCAT	2 cut(s)	22, 767
FalI	AAGNNNNNCTT	4 cut(s)	596, 628, 911, 943
FaqI	GGGAC	1 cut(s)	1069
FbaI	TGATCA	2 cut(s)	751, 1236
FblI	GTMKAC	1 cut(s)	474
FokI	GGATG	3 cut(s)	301, 470, 566
FspBI	CTAG	4 cut(s)	170, 906, 1205, 1230
GlaI	GCGC	3 cut(s)	577, 586, 1480
HaeIII	GGCC	5 cut(s)	53, 161, 524, 608, 1499
HapII	CCGG	1 cut(s)	371
HhaI	GCGC	3 cut(s)	578, 587, 1481
Hin6I	GCGC	3 cut(s)	576, 585, 1479
HinP1I	GCGC	3 cut(s)	576, 585, 1479
HincII	GTYRAC	1 cut(s)	1374
HindII	GTYRAC	1 cut(s)	1374
HindIII	AAGCTT	2 cut(s)	137, 1188
HinfI	GANTC	4 cut(s)	239, 413, 1134, 1147
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	3 cut(s)	257, 601, 989
Hpy166II	GTNNAC	4 cut(s)	475, 1250, 1374, 1473
Hpy188I	TCNGA	5 cut(s)	244, 256, 982, 1404, 1439
Hpy188III	TCNNGA	7 cut(s)	417, 1151, 1217, 1240, 1333, 1463, 1484
Hpy8I	GTNNAC	4 cut(s)	475, 1250, 1374, 1473
HpyAV	CCTTC	4 cut(s)	238, 527, 812, 1098
HpyCH4IV	ACGT	1 cut(s)	1386
HpyF10VI	GCNNNNNNNGC	8 cut(s)	269, 309, 346, 358, 521, 582, 584, 790
HpyF3I	CTNAG	2 cut(s)	180, 1436
HpySE526I	ACGT	1 cut(s)	1386
HspAI	GCGC	3 cut(s)	576, 585, 1479
Ksp22I	TGATCA	2 cut(s)	751, 1236
Kzo9I	GATC	3 cut(s)	216, 751, 1236
LmnI	GCTCC	2 cut(s)	277, 1354
LweI	GCATC	6 cut(s)	163, 195, 544, 832, 1003, 1144
MaeI	CTAG	4 cut(s)	170, 906, 1205, 1230
MaeII	ACGT	1 cut(s)	1386
MaeIII	GTNAC	3 cut(s)	37, 77, 757
MalI	GATC	3 cut(s)	218, 753, 1238
MboI	GATC	3 cut(s)	216, 751, 1236
MfeI	CAATTG	2 cut(s)	794, 989
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	1 cut(s)	1303
MlyI	GAGTC	1 cut(s)	233
Mph1103I	ATGCAT	2 cut(s)	22, 767
MseI	TTAA	7 cut(s)	387, 543, 651, 789, 801, 1107, 1449
MslI	CAYNNNNRTG	5 cut(s)	25, 764, 1017, 1142, 1238
MspA1I	CMGCKG	1 cut(s)	944
MspI	CCGG	1 cut(s)	371
MspR9I	CCNGG	2 cut(s)	276, 286
MunI	CAATTG	2 cut(s)	794, 989
MvaI	CCWGG	2 cut(s)	276, 286
MvnI	CGCG	3 cut(s)	587, 619, 1311
MwoI	GCNNNNNNNGC	8 cut(s)	269, 309, 346, 358, 521, 582, 584, 790
NdeII	GATC	3 cut(s)	216, 751, 1236
NheI	GCTAGC	1 cut(s)	1229
NlaIV	GGNNCC	1 cut(s)	1198
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	757
NsiI	ATGCAT	2 cut(s)	22, 767
NspI	RCATGY	3 cut(s)	20, 765, 769
NspV	TTCGAA	1 cut(s)	1390
PaeI	GCATGC	2 cut(s)	20, 769
PagI	TCATGA	3 cut(s)	1150, 1239, 1462
PaqCI	CACCTGC	1 cut(s)	946
PceI	AGGCCT	2 cut(s)	608, 1499
PfeI	GAWTC	3 cut(s)	413, 1134, 1147
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
PshBI	ATTAAT	1 cut(s)	1449
PsiI	TTATAA	2 cut(s)	683, 779
Psp6I	CCWGG	2 cut(s)	274, 284
PspGI	CCWGG	2 cut(s)	274, 284
PspN4I	GGNNCC	1 cut(s)	1198
PspPI	GGNCC	3 cut(s)	159, 373, 522
PsrI	GAACNNNNNNTAC	2 cut(s)	908, 940
PstI	CTGCAG	2 cut(s)	510, 943
PsuI	RGATCY	1 cut(s)	216
PvuII	CAGCTG	1 cut(s)	944
RsaI	GTAC	2 cut(s)	910, 1385
RsaNI	GTAC	2 cut(s)	909, 1384
RseI	CAYNNNNRTG	5 cut(s)	25, 764, 1017, 1142, 1238
SaqAI	TTAA	7 cut(s)	387, 543, 651, 789, 801, 1107, 1449
Sau3AI	GATC	3 cut(s)	216, 751, 1236
Sau96I	GGNCC	3 cut(s)	159, 373, 522
ScaI	AGTACT	1 cut(s)	910
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	2 cut(s)	276, 286
SduI	GDGCHC	1 cut(s)	1303
SfaNI	GCATC	6 cut(s)	163, 195, 544, 832, 1003, 1144
SfcI	CTRYAG	3 cut(s)	506, 808, 939
SfuI	TTCGAA	1 cut(s)	1390
SinI	GGWCC	1 cut(s)	373
SmiMI	CAYNNNNRTG	5 cut(s)	25, 764, 1017, 1142, 1238
SmlI	CTYRAG	3 cut(s)	154, 395, 1484
SmoI	CTYRAG	3 cut(s)	154, 395, 1484
SphI	GCATGC	2 cut(s)	20, 769
SseBI	AGGCCT	2 cut(s)	608, 1499
SsiI	CCGC	2 cut(s)	587, 1122
SspMI	CTAG	4 cut(s)	170, 906, 1205, 1230
StuI	AGGCCT	2 cut(s)	608, 1499
StyD4I	CCNGG	2 cut(s)	274, 284
TaiI	ACGT	1 cut(s)	1389
TaqI	TCGA	3 cut(s)	112, 189, 1390
TatI	WGTACW	1 cut(s)	908
TfiI	GAWTC	3 cut(s)	413, 1134, 1147
Tru1I	TTAA	7 cut(s)	387, 543, 651, 789, 801, 1107, 1449
Tru9I	TTAA	7 cut(s)	387, 543, 651, 789, 801, 1107, 1449
TscAI	CASTG	2 cut(s)	493, 578
TseFI	GTSAC	1 cut(s)	757
Tsp45I	GTSAC	1 cut(s)	757
TspDTI	ATGAA	8 cut(s)	132, 220, 305, 474, 687, 826, 1160, 1451
TspRI	CASTG	2 cut(s)	493, 578
VpaK11BI	GGWCC	1 cut(s)	373
VspI	ATTAAT	1 cut(s)	1449
XapI	RAATTY	6 cut(s)	257, 539, 664, 689, 1316, 1392
XceI	RCATGY	3 cut(s)	20, 765, 769
XmiI	GTMKAC	1 cut(s)	474
XspI	CTAG	4 cut(s)	170, 906, 1205, 1230
ZrmI	AGTACT	1 cut(s)	910
Zsp2I	ATGCAT	2 cut(s)	22, 767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.