poly(a) polymerase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PAP_NTPase | PF20750 | 22 - 216 | 3.2e-75 | Poly(A) polymerase nucleotidyltransferase domain |
| NTP_transf_2 | PF01909 | 89 - 172 | 2.9e-10 | Nucleotidyltransferase domain |
| PAP_central | PF04928 | 221 - 366 | 1.2e-68 | Poly(A) polymerase central domain |
| PAP_RNA-bind | PF04926 | 369 - 427 | 6.6e-12 | Poly(A) polymerase predicted RNA binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1515 |
| AccBSI | CCGCTC | 2 cut(s) | 79, 2154 |
| AccI | GTMKAC | 2 cut(s) | 1275, 1456 |
| AccII | CGCG | 3 cut(s) | 927, 1011, 1195 |
| AccIII | TCCGGA | 1 cut(s) | 666 |
| AclWI | GGATC | 6 cut(s) | 300, 313, 555, 1877, 2019, 2075 |
| AcoI | YGGCCR | 1 cut(s) | 848 |
| AcsI | RAATTY | 6 cut(s) | 19, 46, 479, 652, 976, 2074 |
| AcuI | CTGAAG | 3 cut(s) | 707, 1115, 2117 |
| AdeI | CACNNNGTG | 3 cut(s) | 229, 1785, 2235 |
| AfaI | GTAC | 7 cut(s) | 13, 137, 692, 1375, 1789, 1999, 2105 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 385, 469 |
| AflII | CTTAAG | 1 cut(s) | 676 |
| AflIII | ACRYGT | 1 cut(s) | 1404 |
| AgsI | TTSAA | 7 cut(s) | 491, 720, 1061, 1094, 1777, 1847, 1871 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2134 |
| AjnI | CCWGG | 3 cut(s) | 331, 1423, 1511 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1181, 1213 |
| Alw21I | GWGCWC | 3 cut(s) | 444, 663, 1085 |
| Alw26I | GTCTC | 2 cut(s) | 997, 1221 |
| AlwI | GGATC | 6 cut(s) | 300, 313, 555, 1877, 2019, 2075 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 550, 1294, 2028 |
| Aor13HI | TCCGGA | 1 cut(s) | 666 |
| AoxI | GGCC | 6 cut(s) | 92, 362, 848, 1499, 1628, 1742 |
| ApeKI | GCWGC | 4 cut(s) | 244, 1148, 1830, 2069 |
| ApoI | RAATTY | 6 cut(s) | 19, 46, 479, 652, 976, 2074 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2130 |
| AspS9I | GGNCC | 4 cut(s) | 92, 329, 362, 907 |
| AsuC2I | CCSGG | 2 cut(s) | 380, 1530 |
| AsuHPI | GGTGA | 5 cut(s) | 241, 289, 929, 1556, 2161 |
| AsuII | TTCGAA | 1 cut(s) | 601 |
| AsuNHI | GCTAGC | 1 cut(s) | 518 |
| AvaII | GGWCC | 2 cut(s) | 329, 907 |
| BaeGI | GKGCMC | 1 cut(s) | 757 |
| BamHI | GGATCC | 1 cut(s) | 305 |
| BanI | GGYRCC | 1 cut(s) | 1515 |
| BanII | GRGCYC | 2 cut(s) | 444, 1085 |
| BauI | CACGAG | 1 cut(s) | 768 |
| BbsI | GAAGAC | 2 cut(s) | 2133, 2178 |
| Bbv12I | GWGCWC | 3 cut(s) | 444, 663, 1085 |
| BbvI | GCAGC | 4 cut(s) | 256, 1160, 1842, 2056 |
| BceAI | ACGGC | 1 cut(s) | 1296 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 490, 524 |
| BciT130I | CCWGG | 3 cut(s) | 333, 1425, 1513 |
| BciVI | GTATCC | 1 cut(s) | 1996 |
| BclI | TGATCA | 2 cut(s) | 262, 628 |
| BcnI | CCSGG | 2 cut(s) | 380, 1530 |
| BcoDI | GTCTC | 2 cut(s) | 997, 1221 |
| BfaI | CTAG | 7 cut(s) | 197, 519, 801, 981, 1284, 1673, 2181 |
| BfmI | CTRYAG | 1 cut(s) | 1863 |
| BfrI | CTTAAG | 1 cut(s) | 676 |
| BfuI | GTATCC | 1 cut(s) | 1996 |
| BisI | GCNGC | 9 cut(s) | 38, 41, 77, 182, 245, 1149, 1831, 2070, 2116 |
| BlpI | GCTNAGC | 1 cut(s) | 1890 |
| BlsI | GCNGC | 9 cut(s) | 39, 42, 78, 183, 246, 1150, 1832, 2071, 2117 |
| BmcAI | AGTACT | 2 cut(s) | 137, 692 |
| Bme1390I | CCNGG | 5 cut(s) | 333, 380, 1425, 1513, 1530 |
| Bme18I | GGWCC | 2 cut(s) | 329, 907 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2134 |
| BmgT120I | GGNCC | 4 cut(s) | 92, 329, 362, 907 |
| BmiI | GGNNCC | 3 cut(s) | 307, 908, 1517 |
| BmrFI | CCNGG | 5 cut(s) | 333, 380, 1425, 1513, 1530 |
| BmrI | ACTGGG | 4 cut(s) | 235, 703, 760, 851 |
| BmsI | GCATC | 6 cut(s) | 213, 268, 448, 671, 1144, 1661 |
| BmtI | GCTAGC | 1 cut(s) | 522 |
| BmuI | ACTGGG | 4 cut(s) | 235, 703, 760, 851 |
| BpiI | GAAGAC | 2 cut(s) | 2133, 2178 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1808, 1840 |
| BpmI | CTGGAG | 4 cut(s) | 149, 544, 942, 1099 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1890 |
| Bpu14I | TTCGAA | 1 cut(s) | 601 |
| BpuMI | CCSGG | 2 cut(s) | 380, 1530 |
| Bsa29I | ATCGAT | 1 cut(s) | 207 |
| BsaAI | YACGTR | 1 cut(s) | 1370 |
| BsaJI | CCNNGG | 3 cut(s) | 332, 1424, 1502 |
| BsaWI | WCCGGW | 2 cut(s) | 469, 666 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1181, 1211 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 385, 469 |
| Bse1I | ACTGG | 8 cut(s) | 230, 698, 733, 755, 857, 1030, 1082, 1714 |
| BseAI | TCCGGA | 1 cut(s) | 666 |
| BseBI | CCWGG | 3 cut(s) | 333, 1425, 1513 |
| BseCI | ATCGAT | 1 cut(s) | 207 |
| BseDI | CCNNGG | 3 cut(s) | 332, 1424, 1502 |
| BseGI | GGATG | 9 cut(s) | 175, 445, 889, 1245, 1252, 1434, 1438, 1627, 2163 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 385, 469 |
| BseMII | CTCAG | 5 cut(s) | 411, 429, 1632, 1773, 1881 |
| BseNI | ACTGG | 8 cut(s) | 230, 698, 733, 755, 857, 1030, 1082, 1714 |
| BseRI | GAGGAG | 2 cut(s) | 398, 1710 |
| BseSI | GKGCMC | 1 cut(s) | 757 |
| BseXI | GCAGC | 4 cut(s) | 256, 1160, 1842, 2056 |
| BseYI | CCCAGC | 1 cut(s) | 89 |
| Bsh1236I | CGCG | 3 cut(s) | 927, 1011, 1195 |
| Bsh1285I | CGRYCG | 1 cut(s) | 931 |
| BshFI | GGCC | 6 cut(s) | 94, 364, 850, 1501, 1630, 1744 |
| BshNI | GGYRCC | 1 cut(s) | 1515 |
| BshVI | ATCGAT | 1 cut(s) | 207 |
| BsiEI | CGRYCG | 1 cut(s) | 931 |
| BsiHKAI | GWGCWC | 3 cut(s) | 444, 663, 1085 |
| BsiSI | CCGG | 5 cut(s) | 379, 470, 667, 1529, 1569 |
| BslFI | GGGAC | 2 cut(s) | 165, 920 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 385, 469 |
| BsmAI | GTCTC | 2 cut(s) | 997, 1221 |
| BsmFI | GGGAC | 2 cut(s) | 165, 920 |
| BsmI | GAATGC | 1 cut(s) | 1880 |
| BsnI | GGCC | 6 cut(s) | 94, 364, 850, 1501, 1630, 1744 |
| Bsp119I | TTCGAA | 1 cut(s) | 601 |
| Bsp1286I | GDGCHC | 4 cut(s) | 444, 663, 757, 1085 |
| Bsp13I | TCCGGA | 1 cut(s) | 666 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1890 |
| Bsp68I | TCGCGA | 1 cut(s) | 927 |
| BspANI | GGCC | 6 cut(s) | 94, 364, 850, 1501, 1630, 1744 |
| BspCNI | CTCAG | 5 cut(s) | 412, 430, 1633, 1774, 1882 |
| BspDI | ATCGAT | 1 cut(s) | 207 |
| BspEI | TCCGGA | 1 cut(s) | 666 |
| BspFNI | CGCG | 3 cut(s) | 927, 1011, 1195 |
| BspHI | TCATGA | 1 cut(s) | 474 |
| BspLI | GGNNCC | 3 cut(s) | 307, 908, 1517 |
| BspOI | GCTAGC | 1 cut(s) | 522 |
| BspPI | GGATC | 6 cut(s) | 300, 313, 555, 1877, 2019, 2075 |
| BspQI | GCTCTTC | 1 cut(s) | 571 |
| BspT104I | TTCGAA | 1 cut(s) | 601 |
| BspT107I | GGYRCC | 1 cut(s) | 1515 |
| BspTI | CTTAAG | 1 cut(s) | 676 |
| BsrBI | CCGCTC | 2 cut(s) | 79, 2154 |
| BsrI | ACTGG | 8 cut(s) | 230, 698, 733, 755, 857, 1030, 1082, 1714 |
| BssECI | CCNNGG | 3 cut(s) | 332, 1424, 1502 |
| BssSI | CACGAG | 1 cut(s) | 768 |
| Bst2BI | CACGAG | 1 cut(s) | 768 |
| Bst2UI | CCWGG | 3 cut(s) | 333, 1425, 1513 |
| Bst4CI | ACNGT | 7 cut(s) | 237, 598, 911, 1359, 1378, 2042, 2233 |
| Bst6I | CTCTTC | 3 cut(s) | 571, 873, 1011 |
| BstAFI | CTTAAG | 1 cut(s) | 676 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1154, 1294 |
| BstBAI | YACGTR | 1 cut(s) | 1370 |
| BstBI | TTCGAA | 1 cut(s) | 601 |
| BstC8I | GCNNGC | 7 cut(s) | 323, 520, 779, 1319, 1590, 1650, 1835 |
| BstF5I | GGATG | 9 cut(s) | 175, 445, 889, 1245, 1252, 1434, 1438, 1627, 2163 |
| BstFNI | CGCG | 3 cut(s) | 927, 1011, 1195 |
| BstMAI | GTCTC | 2 cut(s) | 997, 1221 |
| BstMCI | CGRYCG | 1 cut(s) | 931 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1008, 1154, 1294, 1513, 1594 |
| BstNI | CCWGG | 3 cut(s) | 333, 1425, 1513 |
| BstNSI | RCATGY | 4 cut(s) | 1408, 1592, 1941, 2122 |
| BstSCI | CCNGG | 5 cut(s) | 331, 378, 1423, 1511, 1528 |
| BstSFI | CTRYAG | 1 cut(s) | 1863 |
| BstSLI | GKGCMC | 1 cut(s) | 757 |
| BstUI | CGCG | 3 cut(s) | 927, 1011, 1195 |
| BstV1I | GCAGC | 4 cut(s) | 256, 1160, 1842, 2056 |
| BstV2I | GAAGAC | 2 cut(s) | 2133, 2178 |
| BstX2I | RGATCY | 4 cut(s) | 305, 547, 2024, 2080 |
| BstYI | RGATCY | 4 cut(s) | 305, 547, 2024, 2080 |
| Bsu15I | ATCGAT | 1 cut(s) | 207 |
| BsuI | GTATCC | 1 cut(s) | 1996 |
| BsuRI | GGCC | 6 cut(s) | 94, 364, 850, 1501, 1630, 1744 |
| BsuTUI | ATCGAT | 1 cut(s) | 207 |
| BtgZI | GCGATG | 1 cut(s) | 908 |
| BtsCI | GGATG | 9 cut(s) | 175, 445, 889, 1245, 1252, 1434, 1438, 1627, 2163 |
| BtsI | GCAGTG | 1 cut(s) | 1561 |
| BtsIMutI | CAGTG | 6 cut(s) | 223, 1075, 1561, 1779, 1999, 2229 |
| BtuMI | TCGCGA | 1 cut(s) | 927 |
| Cac8I | GCNNGC | 7 cut(s) | 323, 520, 779, 1319, 1590, 1650, 1835 |
| CaiI | CAGNNNCTG | 3 cut(s) | 550, 1294, 2028 |
| CciI | TCATGA | 1 cut(s) | 474 |
| Cfr13I | GGNCC | 4 cut(s) | 92, 329, 362, 907 |
| ClaI | ATCGAT | 1 cut(s) | 207 |
| CseI | GACGC | 1 cut(s) | 210 |
| Csp6I | GTAC | 7 cut(s) | 12, 136, 691, 1374, 1788, 1998, 2104 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 827, 862 |
| CviQI | GTAC | 7 cut(s) | 12, 136, 691, 1374, 1788, 1998, 2104 |
| DraIII | CACNNNGTG | 3 cut(s) | 229, 1785, 2235 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2134 |
| EaeI | YGGCCR | 1 cut(s) | 848 |
| Eam1104I | CTCTTC | 3 cut(s) | 571, 873, 1011 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2134 |
| EarI | CTCTTC | 3 cut(s) | 571, 873, 1011 |
| EciI | GGCGGA | 1 cut(s) | 119 |
| Ecl136II | GAGCTC | 2 cut(s) | 442, 1083 |
| Eco147I | AGGCCT | 1 cut(s) | 1501 |
| Eco24I | GRGCYC | 2 cut(s) | 444, 1085 |
| Eco32I | GATATC | 2 cut(s) | 556, 1493 |
| Eco47I | GGWCC | 2 cut(s) | 329, 907 |
| Eco53kI | GAGCTC | 2 cut(s) | 442, 1083 |
| Eco57I | CTGAAG | 3 cut(s) | 707, 1115, 2117 |
| EcoICRI | GAGCTC | 2 cut(s) | 442, 1083 |
| EcoRI | GAATTC | 2 cut(s) | 46, 976 |
| EcoRII | CCWGG | 3 cut(s) | 331, 1423, 1511 |
| EcoRV | GATATC | 2 cut(s) | 556, 1493 |
| EcoT22I | ATGCAT | 1 cut(s) | 974 |
| EcoT38I | GRGCYC | 2 cut(s) | 444, 1085 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2084, 2116 |
| FaqI | GGGAC | 2 cut(s) | 165, 920 |
| FauI | CCCGC | 1 cut(s) | 2147 |
| FbaI | TGATCA | 2 cut(s) | 262, 628 |
| FblI | GTMKAC | 2 cut(s) | 1275, 1456 |
| Fnu4HI | GCNGC | 9 cut(s) | 38, 41, 77, 182, 245, 1149, 1831, 2070, 2116 |
| FokI | GGATG | 9 cut(s) | 182, 432, 896, 1239, 1252, 1441, 1445, 1634, 2170 |
| FriOI | GRGCYC | 2 cut(s) | 444, 1085 |
| Fsp4HI | GCNGC | 9 cut(s) | 38, 41, 77, 182, 245, 1149, 1831, 2070, 2116 |
| FspBI | CTAG | 7 cut(s) | 197, 519, 801, 981, 1284, 1673, 2181 |
| GluI | GCNGC | 9 cut(s) | 38, 41, 77, 182, 245, 1149, 1831, 2070, 2116 |
| GsaI | CCCAGC | 1 cut(s) | 93 |
| GsuI | CTGGAG | 4 cut(s) | 149, 544, 942, 1099 |
| HaeIII | GGCC | 6 cut(s) | 94, 364, 850, 1501, 1630, 1744 |
| HapII | CCGG | 5 cut(s) | 379, 470, 667, 1529, 1569 |
| HgaI | GACGC | 1 cut(s) | 210 |
| HincII | GTYRAC | 3 cut(s) | 240, 376, 1355 |
| HindII | GTYRAC | 3 cut(s) | 240, 376, 1355 |
| HindIII | AAGCTT | 1 cut(s) | 2218 |
| HinfI | GANTC | 9 cut(s) | 153, 634, 919, 1190, 1669, 1717, 1919, 2003, 2189 |
| HpaI | GTTAAC | 2 cut(s) | 240, 376 |
| HpaII | CCGG | 5 cut(s) | 379, 470, 667, 1529, 1569 |
| HphI | GGTGA | 5 cut(s) | 241, 289, 929, 1556, 2161 |
| Hpy99I | CGWCG | 1 cut(s) | 915 |
| HpyAV | CCTTC | 6 cut(s) | 105, 1139, 1171, 1491, 1734, 2141 |
| HpyCH4III | ACNGT | 7 cut(s) | 237, 598, 911, 1359, 1378, 2042, 2233 |
| HpyCH4IV | ACGT | 1 cut(s) | 1369 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1008, 1154, 1294, 1513, 1594 |
| HpySE526I | ACGT | 1 cut(s) | 1369 |
| Kpn2I | TCCGGA | 1 cut(s) | 666 |
| Ksp22I | TGATCA | 2 cut(s) | 262, 628 |
| KspAI | GTTAAC | 2 cut(s) | 240, 376 |
| LguI | GCTCTTC | 1 cut(s) | 571 |
| LmnI | GCTCC | 3 cut(s) | 124, 447, 1080 |
| Lsp1109I | GCAGC | 4 cut(s) | 256, 1160, 1842, 2056 |
| LweI | GCATC | 6 cut(s) | 213, 268, 448, 671, 1144, 1661 |
| MaeI | CTAG | 7 cut(s) | 197, 519, 801, 981, 1284, 1673, 2181 |
| MaeII | ACGT | 1 cut(s) | 1369 |
| MaeIII | GTNAC | 7 cut(s) | 433, 724, 983, 1037, 1820, 1909, 2202 |
| MbiI | CCGCTC | 2 cut(s) | 79, 2154 |
| MflI | RGATCY | 4 cut(s) | 305, 547, 2024, 2080 |
| MhlI | GDGCHC | 4 cut(s) | 444, 663, 757, 1085 |
| MlyI | GAGTC | 6 cut(s) | 147, 1199, 1678, 1711, 1913, 1997 |
| MmeI | TCCRAC | 3 cut(s) | 1694, 2103, 2148 |
| Mph1103I | ATGCAT | 1 cut(s) | 974 |
| MroI | TCCGGA | 1 cut(s) | 666 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2130 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1409 |
| MspA1I | CMGCKG | 2 cut(s) | 43, 1207 |
| MspCI | CTTAAG | 1 cut(s) | 676 |
| MspI | CCGG | 5 cut(s) | 379, 470, 667, 1529, 1569 |
| MspR9I | CCNGG | 5 cut(s) | 333, 380, 1425, 1513, 1530 |
| Mva1269I | GAATGC | 1 cut(s) | 1880 |
| MvaI | CCWGG | 3 cut(s) | 333, 1425, 1513 |
| MvnI | CGCG | 3 cut(s) | 927, 1011, 1195 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1008, 1154, 1294, 1513, 1594 |
| NciI | CCSGG | 2 cut(s) | 380, 1530 |
| NheI | GCTAGC | 1 cut(s) | 518 |
| NlaIV | GGNNCC | 3 cut(s) | 307, 908, 1517 |
| NmeAIII | GCCGAG | 1 cut(s) | 1483 |
| NmuCI | GTSAC | 3 cut(s) | 433, 724, 2202 |
| NruI | TCGCGA | 1 cut(s) | 927 |
| NsiI | ATGCAT | 1 cut(s) | 974 |
| NspI | RCATGY | 4 cut(s) | 1408, 1592, 1941, 2122 |
| NspV | TTCGAA | 1 cut(s) | 601 |
| PaeI | GCATGC | 1 cut(s) | 1592 |
| PagI | TCATGA | 1 cut(s) | 474 |
| PceI | AGGCCT | 1 cut(s) | 1501 |
| PciI | ACATGT | 1 cut(s) | 1404 |
| PciSI | GCTCTTC | 1 cut(s) | 571 |
| PctI | GAATGC | 1 cut(s) | 1880 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2130 |
| PfeI | GAWTC | 3 cut(s) | 634, 919, 2189 |
| PkrI | GCNGC | 9 cut(s) | 39, 42, 78, 183, 246, 1150, 1832, 2071, 2117 |
| PleI | GAGTC | 6 cut(s) | 147, 1198, 1677, 1711, 1913, 1997 |
| PpsI | GAGTC | 6 cut(s) | 147, 1198, 1677, 1711, 1913, 1997 |
| Ppu21I | YACGTR | 1 cut(s) | 1370 |
| PscI | ACATGT | 1 cut(s) | 1404 |
| Psp124BI | GAGCTC | 2 cut(s) | 444, 1085 |
| Psp6I | CCWGG | 3 cut(s) | 331, 1423, 1511 |
| PspFI | CCCAGC | 1 cut(s) | 89 |
| PspGI | CCWGG | 3 cut(s) | 331, 1423, 1511 |
| PspN4I | GGNNCC | 3 cut(s) | 307, 908, 1517 |
| PspPI | GGNCC | 4 cut(s) | 92, 329, 362, 907 |
| PstNI | CAGNNNCTG | 3 cut(s) | 550, 1294, 2028 |
| PsuI | RGATCY | 4 cut(s) | 305, 547, 2024, 2080 |
| PvuII | CAGCTG | 1 cut(s) | 1207 |
| RruI | TCGCGA | 1 cut(s) | 927 |
| RsaI | GTAC | 7 cut(s) | 13, 137, 692, 1375, 1789, 1999, 2105 |
| RsaNI | GTAC | 7 cut(s) | 12, 136, 691, 1374, 1788, 1998, 2104 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1409 |
| SacI | GAGCTC | 2 cut(s) | 444, 1085 |
| SapI | GCTCTTC | 1 cut(s) | 571 |
| SatI | GCNGC | 9 cut(s) | 38, 41, 77, 182, 245, 1149, 1831, 2070, 2116 |
| Sau96I | GGNCC | 4 cut(s) | 92, 329, 362, 907 |
| ScaI | AGTACT | 2 cut(s) | 137, 692 |
| SchI | GAGTC | 6 cut(s) | 147, 1199, 1678, 1711, 1913, 1997 |
| ScrFI | CCNGG | 5 cut(s) | 333, 380, 1425, 1513, 1530 |
| SduI | GDGCHC | 4 cut(s) | 444, 663, 757, 1085 |
| SfaNI | GCATC | 6 cut(s) | 213, 268, 448, 671, 1144, 1661 |
| SfcI | CTRYAG | 1 cut(s) | 1863 |
| SfuI | TTCGAA | 1 cut(s) | 601 |
| SinI | GGWCC | 2 cut(s) | 329, 907 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1409 |
| SmlI | CTYRAG | 1 cut(s) | 676 |
| SmoI | CTYRAG | 1 cut(s) | 676 |
| SphI | GCATGC | 1 cut(s) | 1592 |
| SseBI | AGGCCT | 1 cut(s) | 1501 |
| SspMI | CTAG | 7 cut(s) | 197, 519, 801, 981, 1284, 1673, 2181 |
| SstI | GAGCTC | 2 cut(s) | 444, 1085 |
| StuI | AGGCCT | 1 cut(s) | 1501 |
| StyD4I | CCNGG | 5 cut(s) | 331, 378, 1423, 1511, 1528 |
| TaaI | ACNGT | 7 cut(s) | 237, 598, 911, 1359, 1378, 2042, 2233 |
| TaiI | ACGT | 1 cut(s) | 1372 |
| TaqI | TCGA | 6 cut(s) | 207, 601, 1110, 1380, 1495, 1810 |
| TatI | WGTACW | 4 cut(s) | 135, 690, 1787, 2103 |
| TauI | GCSGC | 5 cut(s) | 40, 43, 79, 184, 2118 |
| TfiI | GAWTC | 3 cut(s) | 634, 919, 2189 |
| TscAI | CASTG | 6 cut(s) | 230, 1082, 1561, 1786, 1999, 2236 |
| TseFI | GTSAC | 3 cut(s) | 433, 724, 2202 |
| TseI | GCWGC | 4 cut(s) | 244, 1148, 1830, 2069 |
| Tsp45I | GTSAC | 3 cut(s) | 433, 724, 2202 |
| TspDTI | ATGAA | 4 cut(s) | 385, 491, 989, 1300 |
| TspRI | CASTG | 6 cut(s) | 230, 1082, 1561, 1786, 1999, 2236 |
| Vha464I | CTTAAG | 1 cut(s) | 676 |
| VpaK11BI | GGWCC | 2 cut(s) | 329, 907 |
| XapI | RAATTY | 6 cut(s) | 19, 46, 479, 652, 976, 2074 |
| XbaI | TCTAGA | 1 cut(s) | 1672 |
| XceI | RCATGY | 4 cut(s) | 1408, 1592, 1941, 2122 |
| XmiI | GTMKAC | 2 cut(s) | 1275, 1456 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2130 |
| XspI | CTAG | 7 cut(s) | 197, 519, 801, 981, 1284, 1673, 2181 |
| ZrmI | AGTACT | 2 cut(s) | 137, 692 |
| Zsp2I | ATGCAT | 1 cut(s) | 974 |