Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000312

Physical Location & Seq

Genomic Coordinates Forward (+)

27693385 .. 27699194

Gene Structure 5810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00104540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2067 bp

ATGGTGAGCTCAGACGGATTGAGTGCTTCACCGCCGCCGCCGCAGGCGGTGTCGGCAAAGCAATTCGGGGTCACAAAGCCGATTTCGACGGCCGGGCCTACTGAAGCCGATACTCAGAGAACTTTAGAGTTGGAGAAGCTTTTGGTTGAAGCTGGGCTTTACGAAAGCAAAGAGGAAGCTGCCAAGAGAGAGGAGGTTCTTCACCGAATTGGGCAGATTGTTAAGGATTGGGTAAAGCAACTTACTCAGTTGAGAGGATATACAGATCAAATGGTTGAGGATGCTAATGCTCTTATTTTTACATTTGGTTCGTATAGGCTTGGGGTACATGGTCCTGGGGCTGACATAGACACATTGTGTGTTGGGCCATCTTATGTCAACCGTGAGGAAGACTTCTTCTTTGTATTGCACAACATTCTGGCTGAAATGGAAGAAGTGACTGAACTGCAACCAGTTCCAGATGCCCATGTTCCCGTAATGAGGTTTAAGTTTGATGGAATATCAATTGACCTCCTTTATGCAAGTGTTTCTCTGTTGGTTGTACCAGAAGACCTGGACATTTCTGATGTATCTCTGTTGTACAACATCGATGAGCCTACTGTTCGAAGTCTTAATGGCTGCAGGGTTGCTGATCAAATTCTTAAGCTTGTTCCAAATGTTGAGCATTTCTGTACAACACTCCGATGCTTGAAGTTTTGGGCGAAAAGGCGTGGTGTTTATTCCAATGTTACTGGATTTCTTGGTGGTGTGAACTGGGCTCTCCTTGTTGCCCGAGTGTGTCAACTTTATCCTAATGCAGTTCCTAGCATGCTGGTTTCTCGATTTTTTAGAGTCTACACACAATGGCGATGGCCAAATCCTGTCATGTTATGTGCTATTGAAGAGGATGAACTTGGTTTTAATGTTTGGGACCCACGCAAAAATCCTCGCGACCGTACTCATCATATGCCAATTATAACTCCTGCATACCCTTGTATGAACTCTAGCTACAATGTTTCTAAAAGTACCCTCCGTGTCATGATGGAGCAGTTTCAGCAGGGAAACAAGATTTCTGAGGAAATAGAGCTGAATAAAGCTAGGTGGTGTGCTCTGTTTGAACCATATTTGTTCTTTGAAAGCTACAAGAACTATCTCCAGGTCGACATCGTTGCAGTTGATGCTGATGATCTGCGTGCTTGGAAAGGCTGGGTGGAATCTCGGTTGAGGCAACTGACTCTAATGATTGAGCGGGATACTTTGGAGATGTTACAATGTCACCCATATCCTCATGAGTATGTTGATACGACCAAACAGTGTGCACATAGTGCTTTCTTTATGGGTTTGCAGAGGAAACAAGGTGAAAAGGTTCAGGGTCAGCAGTTCGATATACGAGGGACTGTTGATGAGTTCAAGCAGTCCATTGAGATGTACAATTTTTGGAAACCTGGGATGGAAATTTATGTTTCTCACGTTCGTAGAAGGCAACTTCCTTCTTATGTGTTTCCTGATGGTTGTAAACGGCCTAGACCATCTAGAGCTGTGGCCCTGCAGCATGATAATGAAGTTAGTGCGACGGGTTCTGGTGAGAGACACCTGAAGAGGAAGAATGATCTTGGTGGGGGTTCGCCACCGAAACGGCTATCTATTAGCCCTCAGCCCCAGGATTCAATATCTCCTGAAATTATCACTCACAGGGTAGGAAGTGCATCTCCAGAGACTTTTGATAAATGCTTTAGTTTGGAGGTAGTTGATTCAAATAAAAAAACGTTGTCCGGTGAACTGGAGCCTGGAGATGCGACCAATTCCAGTGTTGTTTCAAGTGTTACAAGCATGAGCAGTAGTGAAGATGCTGGATTTGGATCAATGACTGGTAGCTGTGAGGGGAATACTAAAAGTGTTGAAGGAAGCAGTATTGGGAGTAACACTGCTTCTTTATGTGAGGCAGACTCTGAATCTCTTTCAGTTAACGGAGGCGAAAATGGCAACCTTGTGCAAAGTGGATCACAAGAAGGATTAGAGTTGAATGCTGCATTTGGGATGATACTTAATCCTAGCGAGGGAGTAAGATCGGAAGCAGGTTGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004652 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

NTP_transf_2 PAP_RNA-bind PAP_central

Protein Analysis

688

Amino Acids

76.73

Weight (kDa)

5.26

Isoelectric Point (pI)

50.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_NTPase	PF20750	23 - 217	1e-77	Poly(A) polymerase nucleotidyltransferase domain
NTP_transf_2	PF01909	83 - 172	1.9e-10	Nucleotidyltransferase domain
PAP_central	PF04928	222 - 366	2.5e-69	Poly(A) polymerase central domain
PAP_RNA-bind	PF04926	370 - 429	7.5e-11	Poly(A) polymerase predicted RNA binding domain
PAP_RNA-bind	PF04926	427 - 502	6e-08	Poly(A) polymerase predicted RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850
fragaria_vesca	FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471
malus_domestica	MD08G1110400.v1.1 MD09G1202000.v1.1 MD09G1202100.v1.1 MD17G1182800.v1.1
prunus_persica	Prupe.1G444600_v2.0.a1 Prupe.3G057600_v2.0.a1 Prupe.3G057600_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1
pyrus_communis	pycom08g09190 pycom09g11890 pycom15g08420 pycom17g19200
rosa_chinensis	RchiOBHm_Chr2g0140721 RchiOBHm_Chr2g0140741 RchiOBHm_Chr2g0140761 RchiOBHm_Chr6g0306691
rosa_laevigata	RLG00000010773 RLG00000019895 RLG00000019896
rosa_multiflora	Rmu_co8193342.1_g000001 Rmu_sc0003342.1_g000015 Rmu_sc0003342.1_g000021 Rmu_sc0003342.1_g000026 Rmu_sc0005201.1_g000002 Rmu_sc0017785.1_g000009
rosa_roxburghii	Rroxscaffold_2G00104510 Rroxscaffold_2G00104540 Rroxscaffold_7G00161540
rosa_rugosa	Rorug02G0364600 Rorug02G0364700 Rorug02G0364800 Rorug02G0364900 Rorug02G0365000 Rorug06G0351600 Rorug06G0351700
rosa_samantha	Rh2AG416100 Rh2AG416200 Rh2AG416300 Rh2BG425700 Rh2BG425800 Rh2BG425900 Rh2CG402300 Rh2CG402400 Rh2CG402500 Rh2DG435600 Rh2DG435700 Rh2DG435800 Rh6AG464000 Rh6BG437000 Rh6CG478100 Rh6DG464900
rosa_wichuraiana	Rw2G034050 Rw2G034060 Rw6G040420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	956
Acc36I	ACCTGC	1 cut(s)	2045
AccBSI	CCGCTC	1 cut(s)	1228
AccI	GTMKAC	2 cut(s)	834, 1140
AccII	CGCG	1 cut(s)	930
AciI	CCGC	6 cut(s)	32, 35, 38, 41, 47, 1228
AclI	AACGTT	1 cut(s)	1745
AclWI	GGATC	2 cut(s)	1846, 1987
AcoI	YGGCCR	2 cut(s)	90, 851
AcsI	RAATTY	2 cut(s)	636, 1434
AcuI	CTGAAG	2 cut(s)	123, 1595
AdeI	CACNNNGTG	2 cut(s)	357, 1304
AfaI	GTAC	7 cut(s)	327, 543, 581, 673, 937, 1006, 1409
AfiI	CCNNNNNNNGG	2 cut(s)	480, 2036
AflII	CTTAAG	1 cut(s)	641
AjnI	CCWGG	6 cut(s)	334, 552, 1134, 1423, 1638, 1765
Alw21I	GWGCWC	3 cut(s)	11, 1090, 1300
Alw26I	GTCTC	2 cut(s)	1561, 1688
Alw44I	GTGCAC	1 cut(s)	1296
AlwI	GGATC	2 cut(s)	1846, 1987
AlwNI	CAGNNNCTG	1 cut(s)	1928
Ama87I	CYCGRG	1 cut(s)	771
AoxI	GGCC	6 cut(s)	90, 95, 365, 851, 1499, 1521
ApaLI	GTGCAC	1 cut(s)	1296
ApeKI	GCWGC	4 cut(s)	179, 618, 1528, 2006
ApoI	RAATTY	2 cut(s)	636, 1434
ArsI	GACNNNNNNTTYG	2 cut(s)	383, 415
Asp700I	GAANNNNTTC	1 cut(s)	1344
AspS9I	GGNCC	5 cut(s)	95, 332, 365, 910, 1522
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	7 cut(s)	16, 21, 194, 1247, 1349, 1574, 1766
AsuII	TTCGAA	1 cut(s)	604
AvaI	CYCGRG	1 cut(s)	771
AvaII	GGWCC	2 cut(s)	332, 910
BaeGI	GKGCMC	1 cut(s)	1300
BalI	TGGCCA	1 cut(s)	853
BanII	GRGCYC	2 cut(s)	11, 760
BarI	GAAGNNNNNNTAC	2 cut(s)	1891, 1923
BbsI	GAAGAC	2 cut(s)	396, 555
Bbv12I	GWGCWC	3 cut(s)	11, 1090, 1300
BbvCI	CCTCAGC	1 cut(s)	1632
BbvI	GCAGC	4 cut(s)	166, 605, 1540, 1993
BccI	CCATC	7 cut(s)	376, 488, 843, 1015, 1423, 1481, 1516
BceAI	ACGGC	3 cut(s)	105, 1514, 1631
BcgI	CGANNNNNNTGC	2 cut(s)	1130, 1164
BciT130I	CCWGG	6 cut(s)	336, 554, 1136, 1425, 1640, 1767
BciVI	GTATCC	1 cut(s)	1225
BclI	TGATCA	1 cut(s)	631
BcnI	CCSGG	1 cut(s)	94
BcoDI	GTCTC	2 cut(s)	1561, 1688
BfaI	CTAG	6 cut(s)	804, 984, 1077, 1503, 1512, 2031
BfmI	CTRYAG	2 cut(s)	619, 1526
BfrI	CTTAAG	1 cut(s)	641
BfuAI	ACCTGC	1 cut(s)	2045
BfuI	GTATCC	1 cut(s)	1225
BisI	GCNGC	7 cut(s)	35, 38, 41, 180, 619, 1529, 2007
BlsI	GCNGC	7 cut(s)	36, 39, 42, 181, 620, 1530, 2008
Bme1390I	CCNGG	7 cut(s)	94, 336, 554, 1136, 1425, 1640, 1767
Bme18I	GGWCC	2 cut(s)	332, 910
BmeT110I	CYCGRG	1 cut(s)	771
BmgT120I	GGNCC	5 cut(s)	95, 332, 365, 910, 1522
BmiI	GGNNCC	3 cut(s)	911, 912, 1764
BmrFI	CCNGG	7 cut(s)	94, 336, 554, 1136, 1425, 1640, 1767
BmrI	ACTGGG	1 cut(s)	763
BmsI	GCATC	7 cut(s)	271, 451, 674, 1147, 1694, 1762, 1816
BmuI	ACTGGG	1 cut(s)	763
BpiI	GAAGAC	2 cut(s)	396, 555
BplI	GAGNNNNNCTC	2 cut(s)	1910, 1942
BpmI	CTGGAG	4 cut(s)	1118, 1674, 1781, 1788
Bpu10I	CCTNAGC	1 cut(s)	1632
Bpu14I	TTCGAA	1 cut(s)	604
BpuMI	CCSGG	1 cut(s)	94
Bsa29I	ATCGAT	1 cut(s)	588
BsaBI	GATNNNNATC	1 cut(s)	1837
BsaJI	CCNNGG	3 cut(s)	335, 1424, 1638
BsaWI	WCCGGW	1 cut(s)	1751
Bsc4I	CCNNNNNNNGG	2 cut(s)	480, 2036
Bse1I	ACTGG	6 cut(s)	452, 736, 758, 1764, 1785, 1852
Bse8I	GATNNNNATC	1 cut(s)	1837
BseBI	CCWGG	6 cut(s)	336, 554, 1136, 1425, 1640, 1767
BseCI	ATCGAT	1 cut(s)	588
BseDI	CCNNGG	3 cut(s)	335, 1424, 1638
BseGI	GGATG	4 cut(s)	286, 892, 1434, 2022
BseJI	GATNNNNATC	1 cut(s)	1837
BseLI	CCNNNNNNNGG	2 cut(s)	480, 2036
BseMII	CTCAG	5 cut(s)	24, 128, 260, 1044, 1646
BseNI	ACTGG	6 cut(s)	452, 736, 758, 1764, 1785, 1852
BseRI	GAGGAG	1 cut(s)	206
BseSI	GKGCMC	1 cut(s)	1300
BseX3I	CGGCCG	1 cut(s)	90
BseXI	GCAGC	4 cut(s)	166, 605, 1540, 1993
BseYI	CCCAGC	2 cut(s)	152, 1185
Bsh1236I	CGCG	1 cut(s)	930
Bsh1285I	CGRYCG	2 cut(s)	93, 934
BshFI	GGCC	6 cut(s)	92, 97, 367, 853, 1501, 1523
BshVI	ATCGAT	1 cut(s)	588
BsiEI	CGRYCG	2 cut(s)	93, 934
BsiHKAI	GWGCWC	3 cut(s)	11, 1090, 1300
BsiHKCI	CYCGRG	1 cut(s)	771
BsiSI	CCGG	2 cut(s)	93, 1752
BslFI	GGGAC	2 cut(s)	923, 1387
BslI	CCNNNNNNNGG	2 cut(s)	480, 2036
BsmAI	GTCTC	2 cut(s)	1561, 1688
BsmFI	GGGAC	2 cut(s)	923, 1387
BsmI	GAATGC	1 cut(s)	2008
BsnI	GGCC	6 cut(s)	92, 97, 367, 853, 1501, 1523
BsoBI	CYCGRG	1 cut(s)	771
Bsp119I	TTCGAA	1 cut(s)	604
Bsp1286I	GDGCHC	4 cut(s)	11, 760, 1090, 1300
Bsp1407I	TGTACA	3 cut(s)	579, 671, 1407
Bsp143I	GATC	7 cut(s)	265, 631, 1165, 1588, 1838, 1979, 2045
Bsp68I	TCGCGA	1 cut(s)	930
BspACI	CCGC	6 cut(s)	32, 35, 38, 41, 47, 1228
BspANI	GGCC	6 cut(s)	92, 97, 367, 853, 1501, 1523
BspCNI	CTCAG	5 cut(s)	23, 127, 259, 1045, 1645
BspDI	ATCGAT	1 cut(s)	588
BspFNI	CGCG	1 cut(s)	930
BspHI	TCATGA	2 cut(s)	1017, 1267
BspLI	GGNNCC	3 cut(s)	911, 912, 1764
BspMAI	CTGCAG	2 cut(s)	623, 1530
BspMI	ACCTGC	1 cut(s)	2045
BspPI	GGATC	2 cut(s)	1846, 1987
BspT104I	TTCGAA	1 cut(s)	604
BspTI	CTTAAG	1 cut(s)	641
BsrBI	CCGCTC	1 cut(s)	1228
BsrGI	TGTACA	3 cut(s)	579, 671, 1407
BsrI	ACTGG	6 cut(s)	452, 736, 758, 1764, 1785, 1852
BssECI	CCNNGG	3 cut(s)	335, 1424, 1638
BssMI	GATC	7 cut(s)	265, 631, 1165, 1588, 1838, 1979, 2045
Bst2UI	CCWGG	6 cut(s)	336, 554, 1136, 1425, 1640, 1767
Bst4CI	ACNGT	5 cut(s)	383, 601, 935, 1293, 1378
Bst6I	CTCTTC	2 cut(s)	876, 1571
BstAFI	CTTAAG	1 cut(s)	641
BstAPI	GCANNNNNTGC	2 cut(s)	1157, 1304
BstAUI	TGTACA	3 cut(s)	579, 671, 1407
BstBI	TTCGAA	1 cut(s)	604
BstC8I	GCNNGC	3 cut(s)	45, 809, 1173
BstDEI	CTNAG	5 cut(s)	10, 114, 246, 1053, 1632
BstF5I	GGATG	4 cut(s)	286, 892, 1434, 2022
BstFNI	CGCG	1 cut(s)	930
BstKTI	GATC	7 cut(s)	268, 634, 1168, 1591, 1841, 1982, 2048
BstMAI	GTCTC	2 cut(s)	1561, 1688
BstMBI	GATC	7 cut(s)	265, 631, 1165, 1588, 1838, 1979, 2045
BstMCI	CGRYCG	2 cut(s)	93, 934
BstMWI	GCNNNNNNNGC	6 cut(s)	40, 53, 1033, 1157, 1304, 1959
BstNI	CCWGG	6 cut(s)	336, 554, 1136, 1425, 1640, 1767
BstNSI	RCATGY	1 cut(s)	811
BstSCI	CCNGG	7 cut(s)	92, 334, 552, 1134, 1423, 1638, 1765
BstSFI	CTRYAG	2 cut(s)	619, 1526
BstSLI	GKGCMC	1 cut(s)	1300
BstUI	CGCG	1 cut(s)	930
BstV1I	GCAGC	4 cut(s)	166, 605, 1540, 1993
BstV2I	GAAGAC	2 cut(s)	396, 555
BstZI	CGGCCG	1 cut(s)	90
Bsu15I	ATCGAT	1 cut(s)	588
BsuI	GTATCC	1 cut(s)	1225
BsuRI	GGCC	6 cut(s)	92, 97, 367, 853, 1501, 1523
BsuTUI	ATCGAT	1 cut(s)	588
BtgZI	GCGATG	1 cut(s)	862
BtsCI	GGATG	4 cut(s)	286, 892, 1434, 2022
BtsI	GCAGTG	1 cut(s)	1902
BtsIMutI	CAGTG	3 cut(s)	1298, 1792, 1902
BtuMI	TCGCGA	1 cut(s)	930
BveI	ACCTGC	1 cut(s)	2045
Cac8I	GCNNGC	3 cut(s)	45, 809, 1173
CaiI	CAGNNNCTG	1 cut(s)	1928
CciI	TCATGA	2 cut(s)	1017, 1267
Cfr13I	GGNCC	5 cut(s)	95, 332, 365, 910, 1522
ClaI	ATCGAT	1 cut(s)	588
Csp6I	GTAC	7 cut(s)	326, 542, 580, 672, 936, 1005, 1408
CviAII	CATG	8 cut(s)	329, 467, 808, 865, 1018, 1268, 1532, 1810
CviQI	GTAC	7 cut(s)	326, 542, 580, 672, 936, 1005, 1408
DdeI	CTNAG	5 cut(s)	10, 114, 246, 1053, 1632
DpnI	GATC	7 cut(s)	267, 633, 1167, 1590, 1840, 1981, 2047
DpnII	GATC	7 cut(s)	265, 631, 1165, 1588, 1838, 1979, 2045
DraIII	CACNNNGTG	2 cut(s)	357, 1304
EaeI	YGGCCR	2 cut(s)	90, 851
EagI	CGGCCG	1 cut(s)	90
Eam1104I	CTCTTC	2 cut(s)	876, 1571
EarI	CTCTTC	2 cut(s)	876, 1571
Ecl136II	GAGCTC	1 cut(s)	9
EclXI	CGGCCG	1 cut(s)	90
Eco24I	GRGCYC	2 cut(s)	11, 760
Eco47I	GGWCC	2 cut(s)	332, 910
Eco52I	CGGCCG	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	9
Eco57I	CTGAAG	2 cut(s)	123, 1595
Eco88I	CYCGRG	1 cut(s)	771
EcoICRI	GAGCTC	1 cut(s)	9
EcoO109I	RGGNCCY	1 cut(s)	910
EcoRII	CCWGG	6 cut(s)	334, 552, 1134, 1423, 1638, 1765
EcoT38I	GRGCYC	2 cut(s)	11, 760
FaeI	CATG	8 cut(s)	332, 470, 811, 868, 1021, 1271, 1535, 1813
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FaqI	GGGAC	2 cut(s)	923, 1387
FatI	CATG	8 cut(s)	328, 466, 807, 864, 1017, 1267, 1531, 1809
FauI	CCCGC	1 cut(s)	1221
FauNDI	CATATG	1 cut(s)	945
FbaI	TGATCA	1 cut(s)	631
FblI	GTMKAC	2 cut(s)	834, 1140
Fnu4HI	GCNGC	7 cut(s)	35, 38, 41, 180, 619, 1529, 2007
FokI	GGATG	4 cut(s)	293, 899, 1441, 2029
FriOI	GRGCYC	2 cut(s)	11, 760
Fsp4HI	GCNGC	7 cut(s)	35, 38, 41, 180, 619, 1529, 2007
FspBI	CTAG	6 cut(s)	804, 984, 1077, 1503, 1512, 2031
GluI	GCNGC	7 cut(s)	35, 38, 41, 180, 619, 1529, 2007
GsaI	CCCAGC	2 cut(s)	156, 1189
GsuI	CTGGAG	4 cut(s)	1118, 1674, 1781, 1788
HaeIII	GGCC	6 cut(s)	92, 97, 367, 853, 1501, 1523
HapII	CCGG	2 cut(s)	93, 1752
Hin1II	CATG	8 cut(s)	332, 470, 811, 868, 1021, 1271, 1535, 1813
HincII	GTYRAC	4 cut(s)	379, 782, 1141, 1945
HindII	GTYRAC	4 cut(s)	379, 782, 1141, 1945
HindIII	AAGCTT	2 cut(s)	137, 644
HinfI	GANTC	7 cut(s)	831, 1193, 1213, 1643, 1730, 1925, 1931
HpaI	GTTAAC	1 cut(s)	1945
HpaII	CCGG	2 cut(s)	93, 1752
HphI	GGTGA	7 cut(s)	16, 21, 194, 1247, 1349, 1574, 1766
Hpy166II	GTNNAC	9 cut(s)	379, 751, 782, 835, 1141, 1298, 1496, 1757, 1945
Hpy188I	TCNGA	7 cut(s)	13, 117, 565, 683, 1054, 1930, 2050
Hpy188III	TCNNGA	9 cut(s)	458, 819, 929, 1018, 1268, 1484, 1512, 1655, 1691
Hpy8I	GTNNAC	9 cut(s)	379, 751, 782, 835, 1141, 1298, 1496, 1757, 1945
Hpy99I	CGWCG	2 cut(s)	91, 1555
HpyAV	CCTTC	4 cut(s)	1452, 1479, 1874, 1982
HpyCH4III	ACNGT	5 cut(s)	383, 601, 935, 1293, 1378
HpyCH4IV	ACGT	2 cut(s)	1449, 1745
HpyF10VI	GCNNNNNNNGC	6 cut(s)	40, 53, 1033, 1157, 1304, 1959
HpyF3I	CTNAG	5 cut(s)	10, 114, 246, 1053, 1632
HpySE526I	ACGT	2 cut(s)	1449, 1745
Hsp92II	CATG	8 cut(s)	332, 470, 811, 868, 1021, 1271, 1535, 1813
KflI	GGGWCCC	1 cut(s)	910
Ksp22I	TGATCA	1 cut(s)	631
KspAI	GTTAAC	1 cut(s)	1945
Kzo9I	GATC	7 cut(s)	265, 631, 1165, 1588, 1838, 1979, 2045
LmnI	GCTCC	2 cut(s)	1024, 1762
Lsp1109I	GCAGC	4 cut(s)	166, 605, 1540, 1993
LweI	GCATC	7 cut(s)	271, 451, 674, 1147, 1694, 1762, 1816
MaeI	CTAG	6 cut(s)	804, 984, 1077, 1503, 1512, 2031
MaeII	ACGT	2 cut(s)	1449, 1745
MaeIII	GTNAC	7 cut(s)	70, 436, 727, 1245, 1253, 1801, 1898
MalI	GATC	7 cut(s)	267, 633, 1167, 1590, 1840, 1981, 2047
MbiI	CCGCTC	1 cut(s)	1228
MboI	GATC	7 cut(s)	265, 631, 1165, 1588, 1838, 1979, 2045
MboII	GAAGA	9 cut(s)	191, 388, 401, 443, 560, 893, 1588, 1594, 1835
MfeI	CAATTG	1 cut(s)	504
MhlI	GDGCHC	4 cut(s)	11, 760, 1090, 1300
MlsI	TGGCCA	1 cut(s)	853
MluCI	AATT	9 cut(s)	62, 207, 504, 636, 951, 1411, 1434, 1659, 1780
MluNI	TGGCCA	1 cut(s)	853
MlyI	GAGTC	3 cut(s)	840, 1207, 1919
MmeI	TCCRAC	1 cut(s)	111
Mox20I	TGGCCA	1 cut(s)	853
MroXI	GAANNNNTTC	1 cut(s)	1344
MscI	TGGCCA	1 cut(s)	853
MseI	TTAA	8 cut(s)	222, 486, 612, 642, 900, 1944, 2025, 2065
MslI	CAYNNNNRTG	4 cut(s)	682, 1272, 1403, 1536
Msp20I	TGGCCA	1 cut(s)	853
MspCI	CTTAAG	1 cut(s)	641
MspI	CCGG	2 cut(s)	93, 1752
MspR9I	CCNGG	7 cut(s)	94, 336, 554, 1136, 1425, 1640, 1767
MunI	CAATTG	1 cut(s)	504
Mva1269I	GAATGC	1 cut(s)	2008
MvaI	CCWGG	6 cut(s)	336, 554, 1136, 1425, 1640, 1767
MvnI	CGCG	1 cut(s)	930
MwoI	GCNNNNNNNGC	6 cut(s)	40, 53, 1033, 1157, 1304, 1959
NciI	CCSGG	1 cut(s)	94
NdeI	CATATG	1 cut(s)	945
NdeII	GATC	7 cut(s)	265, 631, 1165, 1588, 1838, 1979, 2045
NlaIII	CATG	8 cut(s)	332, 470, 811, 868, 1021, 1271, 1535, 1813
NlaIV	GGNNCC	3 cut(s)	911, 912, 1764
NmuCI	GTSAC	3 cut(s)	70, 436, 1253
NruI	TCGCGA	1 cut(s)	930
NspI	RCATGY	1 cut(s)	811
NspV	TTCGAA	1 cut(s)	604
PaeI	GCATGC	1 cut(s)	811
PagI	TCATGA	2 cut(s)	1017, 1267
PctI	GAATGC	1 cut(s)	2008
PdmI	GAANNNNTTC	1 cut(s)	1344
PfeI	GAWTC	4 cut(s)	1193, 1643, 1730, 1931
PkrI	GCNGC	7 cut(s)	36, 39, 42, 181, 620, 1530, 2008
PleI	GAGTC	3 cut(s)	839, 1207, 1919
PpsI	GAGTC	3 cut(s)	839, 1207, 1919
PpuMI	RGGWCCY	1 cut(s)	910
PsiI	TTATAA	1 cut(s)	956
Psp124BI	GAGCTC	1 cut(s)	11
Psp1406I	AACGTT	1 cut(s)	1745
Psp5II	RGGWCCY	1 cut(s)	910
Psp6I	CCWGG	6 cut(s)	334, 552, 1134, 1423, 1638, 1765
PspFI	CCCAGC	2 cut(s)	152, 1185
PspGI	CCWGG	6 cut(s)	334, 552, 1134, 1423, 1638, 1765
PspN4I	GGNNCC	3 cut(s)	911, 912, 1764
PspPI	GGNCC	5 cut(s)	95, 332, 365, 910, 1522
PspPPI	RGGWCCY	1 cut(s)	910
PsrI	GAACNNNNNNTAC	2 cut(s)	971, 1003
PstI	CTGCAG	2 cut(s)	623, 1530
PstNI	CAGNNNCTG	1 cut(s)	1928
RruI	TCGCGA	1 cut(s)	930
RsaI	GTAC	7 cut(s)	327, 543, 581, 673, 937, 1006, 1409
RsaNI	GTAC	7 cut(s)	326, 542, 580, 672, 936, 1005, 1408
RseI	CAYNNNNRTG	4 cut(s)	682, 1272, 1403, 1536
SacI	GAGCTC	1 cut(s)	11
SalI	GTCGAC	1 cut(s)	1139
SaqAI	TTAA	8 cut(s)	222, 486, 612, 642, 900, 1944, 2025, 2065
SatI	GCNGC	7 cut(s)	35, 38, 41, 180, 619, 1529, 2007
Sau3AI	GATC	7 cut(s)	265, 631, 1165, 1588, 1838, 1979, 2045
Sau96I	GGNCC	5 cut(s)	95, 332, 365, 910, 1522
SchI	GAGTC	3 cut(s)	840, 1207, 1919
ScrFI	CCNGG	7 cut(s)	94, 336, 554, 1136, 1425, 1640, 1767
SduI	GDGCHC	4 cut(s)	11, 760, 1090, 1300
SfaNI	GCATC	7 cut(s)	271, 451, 674, 1147, 1694, 1762, 1816
SfcI	CTRYAG	2 cut(s)	619, 1526
SfuI	TTCGAA	1 cut(s)	604
SinI	GGWCC	2 cut(s)	332, 910
SmiMI	CAYNNNNRTG	4 cut(s)	682, 1272, 1403, 1536
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
SphI	GCATGC	1 cut(s)	811
Sse9I	AATT	9 cut(s)	62, 207, 504, 636, 951, 1411, 1434, 1659, 1780
SsiI	CCGC	6 cut(s)	32, 35, 38, 41, 47, 1228
SspMI	CTAG	6 cut(s)	804, 984, 1077, 1503, 1512, 2031
SstI	GAGCTC	1 cut(s)	11
StyD4I	CCNGG	7 cut(s)	92, 334, 552, 1134, 1423, 1638, 1765
TaaI	ACNGT	5 cut(s)	383, 601, 935, 1293, 1378
TaiI	ACGT	2 cut(s)	1452, 1748
TaqI	TCGA	6 cut(s)	86, 588, 604, 820, 1140, 1362
TasI	AATT	9 cut(s)	62, 207, 504, 636, 951, 1411, 1434, 1659, 1780
TatI	WGTACW	3 cut(s)	579, 671, 1407
TauI	GCSGC	3 cut(s)	37, 40, 43
TfiI	GAWTC	4 cut(s)	1193, 1643, 1730, 1931
Tru1I	TTAA	8 cut(s)	222, 486, 612, 642, 900, 1944, 2025, 2065
Tru9I	TTAA	8 cut(s)	222, 486, 612, 642, 900, 1944, 2025, 2065
TscAI	CASTG	3 cut(s)	1298, 1792, 1909
TseFI	GTSAC	3 cut(s)	70, 436, 1253
TseI	GCWGC	4 cut(s)	179, 618, 1528, 2006
Tsp45I	GTSAC	3 cut(s)	70, 436, 1253
TspDTI	ATGAA	3 cut(s)	903, 992, 1554
TspGWI	ACGGA	3 cut(s)	30, 1001, 1962
TspRI	CASTG	3 cut(s)	1298, 1792, 1909
Vha464I	CTTAAG	1 cut(s)	641
VneI	GTGCAC	1 cut(s)	1296
VpaK11BI	GGWCC	2 cut(s)	332, 910
XapI	RAATTY	2 cut(s)	636, 1434
XbaI	TCTAGA	1 cut(s)	1511
XceI	RCATGY	1 cut(s)	811
XmiI	GTMKAC	2 cut(s)	834, 1140
XmnI	GAANNNNTTC	1 cut(s)	1344
XspI	CTAG	6 cut(s)	804, 984, 1077, 1503, 1512, 2031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.