Rh2DG435800

Poly(A) polymerase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
63049186 .. 63050313
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG435800.1

Sequence Viewer

Length: 945 bp
ATGTTTTGTGCCATTGAAGAGGATGAACTTGGTTTTGGTGTTTGGGACCCACGCAAAAATCCTCGCGACCGGACTCATCATATGCCAATTATAACTCCTGCATACCCTTGTATGAACTCTAGCTACAATGTTTCTAAAAGTACCCTCCGAGTCATGATGGAGCAGTTTCAGCATGGGAACAAGATTTCTGAGGAAATAGAACTGGATAAAGCTAAGTGGTGTGCTCTGTTCGAACCATATTTGTTCTTTAAAAGCTATAAGAACTATCTTCAGGTCGACATAGTTGCAGTTGATGTTGATGATCTGCGTGCTTGGAAAGGCTGGGTGGAATCTCGGTTGAGGAAACTTACTCTAATGATTGAGCGGGATACTATGGAGATGTTACAATGCCACCCATATCCTCACACGTATGTTGATAAAACCAAACAGTGTGCACACAATGCTTTCTATATGGGTTTGCAGAGGAAGCAGGGGGATAAGGTTCAGGGTCAGCAGTTTGATATAAGAAGGACAGTTGATGAGTTTAAGCTGTCCATTAATATGTACAATTTTTGGAAACCTGGGATGGAAATTTACCTTTCTCATGTTCGTAGAAGCCAACTTCCTTTTTACGTGTTTCCTGATGGTAGTAAACGACCTATACAGTCCAGAGTTTTGGCCAAGCAGCATGATCATGAAGTTAGTGGGACGAGTTCTGGTGAGAGACACCTGAATTGGAAGAGTGATCTTGGTGGGGGTTCGCCGGAGAAACAACCTGCATCCATCATCACTTACAAAGCAGGAAGTGCATCTCCAGAGATTTTGGATAAATGTGTTGGTGTGGAGGTATTTGAATCAAACAAAATAACGTTGTCTGGAGAACTGGAGCCTGGAGATGCCTCAAATTCCAATGTTATTACAAACGTTACTAGCATGACTAGTGTTTTCGAAAAATTTGGTATATAG

Protein Analysis

314

Amino Acids

36.12

Weight (kDa)

6.8

Isoelectric Point (pI)

48.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_central PF04928 2 - 78 2.2e-24 Poly(A) polymerase central domain
PAP_RNA-bind PF04926 82 - 141 6.8e-11 Poly(A) polymerase predicted RNA binding domain
PAP_RNA-bind PF04926 139 - 213 1.9e-07 Poly(A) polymerase predicted RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000312)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850
fragaria_vesca FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471
malus_domestica MD08G1110400.v1.1 MD09G1202000.v1.1 MD09G1202100.v1.1 MD17G1182800.v1.1
prunus_persica Prupe.1G444600_v2.0.a1 Prupe.3G057600_v2.0.a1 Prupe.3G057600_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1
pyrus_communis pycom08g09190 pycom09g11890 pycom15g08420 pycom17g19200
rosa_chinensis RchiOBHm_Chr2g0140721 RchiOBHm_Chr2g0140741 RchiOBHm_Chr2g0140761 RchiOBHm_Chr6g0306691
rosa_laevigata RLG00000010773 RLG00000019895 RLG00000019896
rosa_multiflora Rmu_co8193342.1_g000001 Rmu_sc0003342.1_g000015 Rmu_sc0003342.1_g000021 Rmu_sc0003342.1_g000026 Rmu_sc0005201.1_g000002 Rmu_sc0017785.1_g000009
rosa_roxburghii Rroxscaffold_2G00104510 Rroxscaffold_2G00104540 Rroxscaffold_7G00161540
rosa_rugosa Rorug02G0364600 Rorug02G0364700 Rorug02G0364800 Rorug02G0364900 Rorug02G0365000 Rorug06G0351600 Rorug06G0351700
rosa_samantha Rh2AG416100 Rh2AG416200 Rh2AG416300 Rh2BG425700 Rh2BG425800 Rh2BG425900 Rh2CG402300 Rh2CG402400 Rh2CG402500 Rh2DG435600 Rh2DG435700 Rh2DG435800 Rh6AG464000 Rh6BG437000 Rh6CG478100 Rh6DG464900
rosa_wichuraiana Rw2G034050 Rw2G034060 Rw6G040420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 92
Acc36I ACCTGC 1 cut(s) 763
AccBSI CCGCTC 1 cut(s) 364
AccI GTMKAC 1 cut(s) 276
AccII CGCG 1 cut(s) 66
AciI CCGC 1 cut(s) 364
AclI AACGTT 2 cut(s) 848, 903
AcoI YGGCCR 1 cut(s) 657
AcsI RAATTY 3 cut(s) 570, 883, 932
AcuI CTGAAG 1 cut(s) 254
AfaI GTAC 2 cut(s) 142, 545
AflIII ACRYGT 2 cut(s) 405, 612
AgsI TTSAA 2 cut(s) 17, 833
AhlI ACTAGT 1 cut(s) 917
AjnI CCWGG 2 cut(s) 559, 868
AjuI GAANNNNNNNTTGG 2 cut(s) 18, 50
AluBI AGCT 4 cut(s) 123, 212, 255, 529
AluI AGCT 4 cut(s) 123, 212, 255, 529
Alw21I GWGCWC 2 cut(s) 226, 436
Alw26I GTCTC 1 cut(s) 697
Alw44I GTGCAC 1 cut(s) 432
AoxI GGCC 1 cut(s) 657
ApaLI GTGCAC 1 cut(s) 432
ApeKI GCWGC 1 cut(s) 664
ApoI RAATTY 3 cut(s) 570, 883, 932
AseI ATTAAT 1 cut(s) 537
AspS9I GGNCC 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 710
AsuII TTCGAA 2 cut(s) 231, 927
AvaII GGWCC 1 cut(s) 46
BaeGI GKGCMC 1 cut(s) 436
BalI TGGCCA 1 cut(s) 659
Bbv12I GWGCWC 2 cut(s) 226, 436
BbvI GCAGC 1 cut(s) 676
BccI CCATC 4 cut(s) 151, 559, 617, 770
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BciT130I CCWGG 2 cut(s) 561, 870
BciVI GTATCC 1 cut(s) 361
BclI TGATCA 1 cut(s) 670
BcoDI GTCTC 1 cut(s) 697
BcuI ACTAGT 1 cut(s) 917
BfaI CTAG 3 cut(s) 120, 909, 918
BfuAI ACCTGC 1 cut(s) 763
BfuI GTATCC 1 cut(s) 361
BisI GCNGC 1 cut(s) 665
BlsI GCNGC 1 cut(s) 666
Bme1390I CCNGG 2 cut(s) 561, 870
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 3 cut(s) 47, 48, 867
BmrFI CCNGG 2 cut(s) 561, 870
BmsI GCATC 3 cut(s) 767, 797, 865
BpmI CTGGAG 4 cut(s) 777, 876, 884, 891
Bpu14I TTCGAA 2 cut(s) 231, 927
BsaAI YACGTR 2 cut(s) 408, 613
BsaJI CCNNGG 1 cut(s) 560
BsaWI WCCGGW 1 cut(s) 69
Bse1I ACTGG 2 cut(s) 207, 867
BseBI CCWGG 2 cut(s) 561, 870
BseDI CCNNGG 1 cut(s) 560
BseGI GGATG 3 cut(s) 28, 570, 758
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 2 cut(s) 207, 867
BseSI GKGCMC 1 cut(s) 436
BseXI GCAGC 1 cut(s) 676
BseYI CCCAGC 1 cut(s) 321
Bsh1236I CGCG 1 cut(s) 66
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 1 cut(s) 659
BsiEI CGRYCG 1 cut(s) 70
BsiHKAI GWGCWC 2 cut(s) 226, 436
BsiSI CCGG 2 cut(s) 70, 743
BslFI GGGAC 2 cut(s) 59, 700
BsmAI GTCTC 1 cut(s) 697
BsmFI GGGAC 2 cut(s) 59, 700
BsnI GGCC 1 cut(s) 659
Bsp119I TTCGAA 2 cut(s) 231, 927
Bsp1286I GDGCHC 2 cut(s) 226, 436
Bsp1407I TGTACA 1 cut(s) 543
Bsp143I GATC 3 cut(s) 301, 670, 724
Bsp68I TCGCGA 1 cut(s) 66
BspACI CCGC 1 cut(s) 364
BspANI GGCC 1 cut(s) 659
BspCNI CTCAG 1 cut(s) 181
BspFNI CGCG 1 cut(s) 66
BspHI TCATGA 2 cut(s) 153, 673
BspLI GGNNCC 3 cut(s) 47, 48, 867
BspMI ACCTGC 1 cut(s) 763
BspT104I TTCGAA 2 cut(s) 231, 927
BsrBI CCGCTC 1 cut(s) 364
BsrGI TGTACA 1 cut(s) 543
BsrI ACTGG 2 cut(s) 207, 867
BssECI CCNNGG 1 cut(s) 560
BssMI GATC 3 cut(s) 301, 670, 724
Bst2UI CCWGG 2 cut(s) 561, 870
Bst4CI ACNGT 3 cut(s) 429, 514, 645
Bst6I CTCTTC 2 cut(s) 12, 713
BstAPI GCANNNNNTGC 2 cut(s) 440, 785
BstAUI TGTACA 1 cut(s) 543
BstBAI YACGTR 2 cut(s) 408, 613
BstBI TTCGAA 2 cut(s) 231, 927
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 2 cut(s) 189, 213
BstF5I GGATG 3 cut(s) 28, 570, 758
BstFNI CGCG 1 cut(s) 66
BstKTI GATC 3 cut(s) 304, 673, 727
BstMAI GTCTC 1 cut(s) 697
BstMBI GATC 3 cut(s) 301, 670, 724
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 4 cut(s) 169, 440, 466, 785
BstNI CCWGG 2 cut(s) 561, 870
BstSCI CCNGG 2 cut(s) 559, 868
BstSLI GKGCMC 1 cut(s) 436
BstUI CGCG 1 cut(s) 66
BstV1I GCAGC 1 cut(s) 676
BstXI CCANNNNNNTGG 1 cut(s) 655
BsuI GTATCC 1 cut(s) 361
BsuRI GGCC 1 cut(s) 659
BtsCI GGATG 3 cut(s) 28, 570, 758
BtsIMutI CAGTG 1 cut(s) 434
BtuMI TCGCGA 1 cut(s) 66
BveI ACCTGC 1 cut(s) 763
Cac8I GCNNGC 1 cut(s) 309
CciI TCATGA 2 cut(s) 153, 673
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 2 cut(s) 141, 544
CviAII CATG 6 cut(s) 154, 173, 584, 668, 674, 913
CviJI RGCY 8 cut(s) 123, 212, 255, 321, 529, 597, 659, 868
CviKI_1 RGCY 8 cut(s) 123, 212, 255, 321, 529, 597, 659, 868
CviQI GTAC 2 cut(s) 141, 544
DdeI CTNAG 2 cut(s) 189, 213
DpnI GATC 3 cut(s) 303, 672, 726
DpnII GATC 3 cut(s) 301, 670, 724
DraI TTTAAA 1 cut(s) 250
EaeI YGGCCR 1 cut(s) 657
Eam1104I CTCTTC 2 cut(s) 12, 713
EarI CTCTTC 2 cut(s) 12, 713
Eco47I GGWCC 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 254
EcoO109I RGGNCCY 1 cut(s) 46
EcoRII CCWGG 2 cut(s) 559, 868
FaeI CATG 6 cut(s) 157, 176, 587, 671, 677, 916
FaqI GGGAC 2 cut(s) 59, 700
FatI CATG 6 cut(s) 153, 172, 583, 667, 673, 912
FauI CCCGC 1 cut(s) 357
FauNDI CATATG 1 cut(s) 81
FbaI TGATCA 1 cut(s) 670
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 1 cut(s) 665
FokI GGATG 3 cut(s) 35, 577, 745
Fsp4HI GCNGC 1 cut(s) 665
FspBI CTAG 3 cut(s) 120, 909, 918
GluI GCNGC 1 cut(s) 665
GsaI CCCAGC 1 cut(s) 325
GsuI CTGGAG 4 cut(s) 777, 876, 884, 891
HaeIII GGCC 1 cut(s) 659
HapII CCGG 2 cut(s) 70, 743
Hin1II CATG 6 cut(s) 157, 176, 587, 671, 677, 916
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HinfI GANTC 4 cut(s) 73, 150, 329, 833
HpaII CCGG 2 cut(s) 70, 743
HphI GGTGA 1 cut(s) 710
Hpy166II GTNNAC 3 cut(s) 277, 434, 632
Hpy188I TCNGA 2 cut(s) 149, 190
Hpy188III TCNNGA 7 cut(s) 65, 154, 620, 648, 674, 794, 855
Hpy8I GTNNAC 3 cut(s) 277, 434, 632
HpyAV CCTTC 1 cut(s) 501
HpyCH4III ACNGT 3 cut(s) 429, 514, 645
HpyCH4IV ACGT 4 cut(s) 407, 612, 848, 903
HpyCH4V TGCA 6 cut(s) 101, 287, 434, 460, 758, 788
HpyF10VI GCNNNNNNNGC 4 cut(s) 169, 440, 466, 785
HpyF3I CTNAG 2 cut(s) 189, 213
HpySE526I ACGT 4 cut(s) 407, 612, 848, 903
Hsp92II CATG 6 cut(s) 157, 176, 587, 671, 677, 916
KflI GGGWCCC 1 cut(s) 46
Ksp22I TGATCA 1 cut(s) 670
Kzo9I GATC 3 cut(s) 301, 670, 724
LmnI GCTCC 2 cut(s) 160, 865
Lsp1109I GCAGC 1 cut(s) 676
LweI GCATC 3 cut(s) 767, 797, 865
MaeI CTAG 3 cut(s) 120, 909, 918
MaeII ACGT 4 cut(s) 407, 612, 848, 903
MaeIII GTNAC 2 cut(s) 381, 904
MalI GATC 3 cut(s) 303, 672, 726
MbiI CCGCTC 1 cut(s) 364
MboI GATC 3 cut(s) 301, 670, 724
MboII GAAGA 3 cut(s) 29, 260, 730
MhlI GDGCHC 2 cut(s) 226, 436
MlsI TGGCCA 1 cut(s) 659
MluCI AATT 6 cut(s) 87, 547, 570, 712, 883, 932
MluNI TGGCCA 1 cut(s) 659
MlyI GAGTC 2 cut(s) 67, 159
MnlI CCTC 9 cut(s) 13, 72, 155, 184, 333, 411, 456, 817, 889
Mox20I TGGCCA 1 cut(s) 659
MscI TGGCCA 1 cut(s) 659
MseI TTAA 3 cut(s) 249, 525, 537
MslI CAYNNNNRTG 3 cut(s) 408, 539, 672
Msp20I TGGCCA 1 cut(s) 659
MspI CCGG 2 cut(s) 70, 743
MspR9I CCNGG 2 cut(s) 561, 870
MvaI CCWGG 2 cut(s) 561, 870
MvnI CGCG 1 cut(s) 66
MwoI GCNNNNNNNGC 4 cut(s) 169, 440, 466, 785
NdeI CATATG 1 cut(s) 81
NdeII GATC 3 cut(s) 301, 670, 724
NlaIII CATG 6 cut(s) 157, 176, 587, 671, 677, 916
NlaIV GGNNCC 3 cut(s) 47, 48, 867
NruI TCGCGA 1 cut(s) 66
NspV TTCGAA 2 cut(s) 231, 927
PagI TCATGA 2 cut(s) 153, 673
PfeI GAWTC 2 cut(s) 329, 833
PkrI GCNGC 1 cut(s) 666
PleI GAGTC 2 cut(s) 67, 158
PpsI GAGTC 2 cut(s) 67, 158
Ppu21I YACGTR 2 cut(s) 408, 613
PpuMI RGGWCCY 1 cut(s) 46
PshBI ATTAAT 1 cut(s) 537
PsiI TTATAA 1 cut(s) 92
Psp1406I AACGTT 2 cut(s) 848, 903
Psp5II RGGWCCY 1 cut(s) 46
Psp6I CCWGG 2 cut(s) 559, 868
PspFI CCCAGC 1 cut(s) 321
PspGI CCWGG 2 cut(s) 559, 868
PspN4I GGNNCC 3 cut(s) 47, 48, 867
PspPI GGNCC 1 cut(s) 46
PspPPI RGGWCCY 1 cut(s) 46
PsrI GAACNNNNNNTAC 2 cut(s) 107, 139
RruI TCGCGA 1 cut(s) 66
RsaI GTAC 2 cut(s) 142, 545
RsaNI GTAC 2 cut(s) 141, 544
RseI CAYNNNNRTG 3 cut(s) 408, 539, 672
SalI GTCGAC 1 cut(s) 275
SaqAI TTAA 3 cut(s) 249, 525, 537
SatI GCNGC 1 cut(s) 665
Sau3AI GATC 3 cut(s) 301, 670, 724
Sau96I GGNCC 1 cut(s) 46
SchI GAGTC 2 cut(s) 67, 159
ScrFI CCNGG 2 cut(s) 561, 870
SduI GDGCHC 2 cut(s) 226, 436
SfaNI GCATC 3 cut(s) 767, 797, 865
SfuI TTCGAA 2 cut(s) 231, 927
SinI GGWCC 1 cut(s) 46
SmiMI CAYNNNNRTG 3 cut(s) 408, 539, 672
SpeI ACTAGT 1 cut(s) 917
Sse9I AATT 6 cut(s) 87, 547, 570, 712, 883, 932
SsiI CCGC 1 cut(s) 364
SspMI CTAG 3 cut(s) 120, 909, 918
StyD4I CCNGG 2 cut(s) 559, 868
TaaI ACNGT 3 cut(s) 429, 514, 645
TaiI ACGT 4 cut(s) 410, 615, 851, 906
TaqI TCGA 3 cut(s) 231, 276, 927
TasI AATT 6 cut(s) 87, 547, 570, 712, 883, 932
TatI WGTACW 1 cut(s) 543
TfiI GAWTC 2 cut(s) 329, 833
Tru1I TTAA 3 cut(s) 249, 525, 537
Tru9I TTAA 3 cut(s) 249, 525, 537
TscAI CASTG 1 cut(s) 434
TseI GCWGC 1 cut(s) 664
TspDTI ATGAA 3 cut(s) 39, 128, 690
TspRI CASTG 1 cut(s) 434
VneI GTGCAC 1 cut(s) 432
VpaK11BI GGWCC 1 cut(s) 46
VspI ATTAAT 1 cut(s) 537
XapI RAATTY 3 cut(s) 570, 883, 932
XmiI GTMKAC 1 cut(s) 276
XspI CTAG 3 cut(s) 120, 909, 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.