Rh2BG425700

Poly(A) polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000312
Physical Location & Seq
Reverse (-)
60008473 .. 60015532
7060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG425700.1

Sequence Viewer

Length: 2118 bp
ATGGTGAGCTCAGACGGATTGAGTGCTTCACCGCCGCCGCCGCAGGCGGTGTCGGCAAAGCAATTCGGGGTCACAAAGCCGATTTCGACGGCCGGGCCTACTGAAGCCGATACTCAGAGAACTTTAGAGTTGGAGAAGCTTTTGGTTGAAGCCGGGCTTTACGAAAGCAAAGGGGAAGCTGCCAAGAGAGAGGAGGTTCTTCACCGAATTGGGCAGATTGTTAAGGATTGGGTAAAGCAACTTACTCAGTTGAGAGGATACACAGATCAAATGGTTCAGGATGCTAATGCTCTTATTTTTACATTTGGTTCCTATAGGCTTGGGGTACATGGTCCTGGGGCTGACATAGACACATTGTGTGTTGGGCCATCTTATGTCAACCGTGAGGAAGACTTCTTCTTTGTATTGCACAACATTCTGGCTGAAATGGAAGAAGTGACTGAACTGCAACCAGTTCCAGATGCCCATGTTCCCGTAATGAGGTTTAAGTTTGATGGAATATCAATCGACCTCCTTTATGCAAGTGTTTCTCTGTTGGTTGTACCAGAAGACCTGGACATTTCTGATGTATCTCTGTTGTACAACATCGATGAGCCTACTGTTCGAAGTCTTAATGGCTGCAGGGTTGCTGATCAAATTCTTAAGCTTGTTCCAAATGTTGAGCATTTCTGTACAACACTCCGATGCTTGAAGTTTTGGGCGAAAAGGCGTGGTGTTTATTCCAATGTTACTGGATTTCTTGGTGGTGTGAACTGGGCTCTCCTCGTTGCCCGAGTGTGTCAACTTTATCCTAATGCAGTTCCTAGCATGCTGGTTTCTCGATTTTTTAGAGTCTACACACAGTGGCGATGGCCAAATCCTGTCATGTTATGTGCTATTGAAGAGGATGAACTTGGTTTTAATGTTTGGGACCCACGCAAAAATCCTCGCGACCGTACTCATCATATGCCAATTATAACTCCTGCATACCCTTGTATGAACTCTAGCTACAATGTTTCTAAAAGTACCCTCCGTGTCATGATGGAGCAGTTTCAGCAGGGAAACAAGATTTCTGAGGAAATAGAGCTGAATAAAGCTAGGTGGTGTGCTCTGTTTGAACCATATTTGTTCTTTGAAAGCTACAAGAACTATCTCCAGGTCGACATCGTTGCAGTTGATGCTGATGATCTGCGTGCTTGGAAAGGCTGGGTGGAATCTCGGTTGAGGCAACTGACTCTAATGATTGAGCGGGATACTTTGGAGATGTTACAATGTCACCCATATCCTCATGAGTATGTGGATACGACCAAACAGTGTGCACATAGTGCTTTCTTTATGGGTTTGCAGAGGAAACAAGGTGAAAAGGTTCAGGGTCAGCAGTTCGATATACGGGGGACTGTTGATGAGTTCAAGCAGTCCATTGAGATGTACAATTTTTGGAAACCTGGGATGGAAATTTATGTTTCTCACGTTCGAAGAAGGCAACTTCCTTCTTATGTGTTTCCTGATGGTTGTAAACGACCGAGACCATCTAGAGCTGTGGCCCTGCAGCATAATAATGAAGTTAGTCCGACGGGTTCTGGTGAGAGACACCTGAAGAGGAAGAATGATCTTGGTGGGGGTTCGCCACCGAAACGACTATCTAATAGCCCTCAGCCCCAGGATTCAATATCTCCTGAAATTATGACTCACAGAGCAGGAAGTGCATCTCCAGAGACTTTTGATAAATGCTTTAGTTTGGAGGTAGTTGATTCAAATAAAAAAACGTTGTCCGGTGAACTGGAGCCTGGAGATGCGACCAATTCCAGTGTTGTTACGAGTGTTGCAAGCATGAGCAGTAGTGAAGATGCTGGATTTGGATCAATGACTGGTAGCTGTGAGGGGAATACTAAAAGTGTTGAAGGAAGCAGTATTGGGAGTAACACTGCTTCTTTATGTGAGGCAGACTCCGAATCTCTTTCAGTTAACGGAGGCGAAAATGGCAACCTTGTGCAAAGTGGATCACAAGAAGGATTAGAGGTTTTGGATTTAAGTTCCTTTACTTTGACTGCTTTTGATTCTTGTTCATTATTTGCTTGCCTTCTATTGCAATATCTTTGCTATTCAGATTTCTTTACTCTTAACTCAGAAATTATATGA

Protein Analysis

705

Amino Acids

78.76

Weight (kDa)

5.25

Isoelectric Point (pI)

50.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_NTPase PF20750 23 - 217 1.3e-76 Poly(A) polymerase nucleotidyltransferase domain
NTP_transf_2 PF01909 83 - 172 1.4e-10 Nucleotidyltransferase domain
PAP_central PF04928 222 - 366 2.6e-69 Poly(A) polymerase central domain
PAP_RNA-bind PF04926 370 - 429 7.7e-11 Poly(A) polymerase predicted RNA binding domain
PAP_RNA-bind PF04926 427 - 502 6.2e-08 Poly(A) polymerase predicted RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000312)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850
fragaria_vesca FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471
malus_domestica MD08G1110400.v1.1 MD09G1202000.v1.1 MD09G1202100.v1.1 MD17G1182800.v1.1
prunus_persica Prupe.1G444600_v2.0.a1 Prupe.3G057600_v2.0.a1 Prupe.3G057600_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1
pyrus_communis pycom08g09190 pycom09g11890 pycom15g08420 pycom17g19200
rosa_chinensis RchiOBHm_Chr2g0140721 RchiOBHm_Chr2g0140741 RchiOBHm_Chr2g0140761 RchiOBHm_Chr6g0306691
rosa_laevigata RLG00000010773 RLG00000019895 RLG00000019896
rosa_multiflora Rmu_co8193342.1_g000001 Rmu_sc0003342.1_g000015 Rmu_sc0003342.1_g000021 Rmu_sc0003342.1_g000026 Rmu_sc0005201.1_g000002 Rmu_sc0017785.1_g000009
rosa_roxburghii Rroxscaffold_2G00104510 Rroxscaffold_2G00104540 Rroxscaffold_7G00161540
rosa_rugosa Rorug02G0364600 Rorug02G0364700 Rorug02G0364800 Rorug02G0364900 Rorug02G0365000 Rorug06G0351600 Rorug06G0351700
rosa_samantha Rh2AG416100 Rh2AG416200 Rh2AG416300 Rh2BG425700 Rh2BG425800 Rh2BG425900 Rh2CG402300 Rh2CG402400 Rh2CG402500 Rh2DG435600 Rh2DG435700 Rh2DG435800 Rh6AG464000 Rh6BG437000 Rh6CG478100 Rh6DG464900
rosa_wichuraiana Rw2G034050 Rw2G034060 Rw6G040420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 956
AccBSI CCGCTC 1 cut(s) 1228
AccI GTMKAC 2 cut(s) 834, 1140
AccII CGCG 1 cut(s) 930
AciI CCGC 6 cut(s) 32, 35, 38, 41, 47, 1228
AclI AACGTT 1 cut(s) 1745
AclWI GGATC 2 cut(s) 1846, 1987
AcoI YGGCCR 2 cut(s) 90, 851
AcsI RAATTY 2 cut(s) 636, 1434
AcuI CTGAAG 2 cut(s) 123, 1595
AdeI CACNNNGTG 3 cut(s) 357, 843, 1304
AfaI GTAC 7 cut(s) 327, 543, 581, 673, 937, 1006, 1409
AfiI CCNNNNNNNGG 1 cut(s) 480
AflII CTTAAG 1 cut(s) 641
AgsI TTSAA 9 cut(s) 149, 691, 881, 1097, 1115, 1390, 1647, 1734, 1880
AjnI CCWGG 6 cut(s) 334, 552, 1134, 1423, 1638, 1765
Alw21I GWGCWC 3 cut(s) 11, 1090, 1300
Alw26I GTCTC 3 cut(s) 1498, 1561, 1688
Alw44I GTGCAC 1 cut(s) 1296
AlwI GGATC 2 cut(s) 1846, 1987
Ama87I CYCGRG 1 cut(s) 771
AoxI GGCC 5 cut(s) 90, 95, 365, 851, 1521
ApaLI GTGCAC 1 cut(s) 1296
ApeKI GCWGC 3 cut(s) 179, 618, 1528
ApoI RAATTY 2 cut(s) 636, 1434
ArsI GACNNNNNNTTYG 2 cut(s) 383, 415
Asp700I GAANNNNTTC 1 cut(s) 1344
AspS9I GGNCC 5 cut(s) 95, 332, 365, 910, 1522
AsuC2I CCSGG 2 cut(s) 94, 154
AsuHPI GGTGA 7 cut(s) 16, 21, 194, 1247, 1349, 1574, 1766
AsuII TTCGAA 2 cut(s) 604, 1453
AvaI CYCGRG 1 cut(s) 771
AvaII GGWCC 2 cut(s) 332, 910
BaeGI GKGCMC 1 cut(s) 1300
BalI TGGCCA 1 cut(s) 853
BanII GRGCYC 2 cut(s) 11, 760
BarI GAAGNNNNNNTAC 2 cut(s) 1891, 1923
BbsI GAAGAC 2 cut(s) 396, 555
Bbv12I GWGCWC 3 cut(s) 11, 1090, 1300
BbvCI CCTCAGC 1 cut(s) 1632
BbvI GCAGC 3 cut(s) 166, 605, 1540
BccI CCATC 7 cut(s) 376, 488, 843, 1015, 1423, 1481, 1516
BceAI ACGGC 1 cut(s) 105
BcgI CGANNNNNNTGC 2 cut(s) 1130, 1164
BciT130I CCWGG 6 cut(s) 336, 554, 1136, 1425, 1640, 1767
BciVI GTATCC 3 cut(s) 251, 1225, 1273
BclI TGATCA 1 cut(s) 631
BcnI CCSGG 2 cut(s) 94, 154
BcoDI GTCTC 3 cut(s) 1498, 1561, 1688
BfaI CTAG 4 cut(s) 804, 984, 1077, 1512
BfmI CTRYAG 3 cut(s) 313, 619, 1526
BfrI CTTAAG 1 cut(s) 641
BfuI GTATCC 3 cut(s) 251, 1225, 1273
BisI GCNGC 6 cut(s) 35, 38, 41, 180, 619, 1529
BlsI GCNGC 6 cut(s) 36, 39, 42, 181, 620, 1530
Bme1390I CCNGG 8 cut(s) 94, 154, 336, 554, 1136, 1425, 1640, 1767
Bme18I GGWCC 2 cut(s) 332, 910
BmeT110I CYCGRG 1 cut(s) 771
BmgT120I GGNCC 5 cut(s) 95, 332, 365, 910, 1522
BmiI GGNNCC 4 cut(s) 310, 911, 912, 1764
BmrFI CCNGG 8 cut(s) 94, 154, 336, 554, 1136, 1425, 1640, 1767
BmrI ACTGGG 1 cut(s) 763
BmsI GCATC 7 cut(s) 271, 451, 674, 1147, 1694, 1762, 1816
BmuI ACTGGG 1 cut(s) 763
BpiI GAAGAC 2 cut(s) 396, 555
BplI GAGNNNNNCTC 2 cut(s) 1910, 1942
BpmI CTGGAG 4 cut(s) 1118, 1674, 1781, 1788
Bpu10I CCTNAGC 1 cut(s) 1632
Bpu14I TTCGAA 2 cut(s) 604, 1453
BpuMI CCSGG 2 cut(s) 94, 154
Bsa29I ATCGAT 1 cut(s) 588
BsaBI GATNNNNATC 1 cut(s) 1837
BsaI GGTCTC 1 cut(s) 1498
BsaJI CCNNGG 3 cut(s) 335, 1424, 1638
BsaWI WCCGGW 1 cut(s) 1751
Bsc4I CCNNNNNNNGG 1 cut(s) 480
Bse1I ACTGG 6 cut(s) 452, 736, 758, 1764, 1785, 1852
Bse8I GATNNNNATC 1 cut(s) 1837
BseBI CCWGG 6 cut(s) 336, 554, 1136, 1425, 1640, 1767
BseCI ATCGAT 1 cut(s) 588
BseDI CCNNGG 3 cut(s) 335, 1424, 1638
BseGI GGATG 3 cut(s) 286, 892, 1434
BseJI GATNNNNATC 1 cut(s) 1837
BseLI CCNNNNNNNGG 1 cut(s) 480
BseMII CTCAG 6 cut(s) 24, 128, 260, 1044, 1646, 2118
BseNI ACTGG 6 cut(s) 452, 736, 758, 1764, 1785, 1852
BseRI GAGGAG 2 cut(s) 206, 752
BseSI GKGCMC 1 cut(s) 1300
BseX3I CGGCCG 1 cut(s) 90
BseXI GCAGC 3 cut(s) 166, 605, 1540
BseYI CCCAGC 1 cut(s) 1185
Bsh1236I CGCG 1 cut(s) 930
Bsh1285I CGRYCG 3 cut(s) 93, 934, 1502
BshFI GGCC 5 cut(s) 92, 97, 367, 853, 1523
BshVI ATCGAT 1 cut(s) 588
BsiEI CGRYCG 3 cut(s) 93, 934, 1502
BsiHKAI GWGCWC 3 cut(s) 11, 1090, 1300
BsiHKCI CYCGRG 1 cut(s) 771
BsiSI CCGG 3 cut(s) 93, 153, 1752
BslFI GGGAC 2 cut(s) 923, 1387
BslI CCNNNNNNNGG 1 cut(s) 480
BsmAI GTCTC 3 cut(s) 1498, 1561, 1688
BsmFI GGGAC 2 cut(s) 923, 1387
BsnI GGCC 5 cut(s) 92, 97, 367, 853, 1523
Bso31I GGTCTC 1 cut(s) 1498
BsoBI CYCGRG 1 cut(s) 771
Bsp119I TTCGAA 2 cut(s) 604, 1453
Bsp1286I GDGCHC 4 cut(s) 11, 760, 1090, 1300
Bsp1407I TGTACA 3 cut(s) 579, 671, 1407
Bsp143I GATC 6 cut(s) 265, 631, 1165, 1588, 1838, 1979
Bsp68I TCGCGA 1 cut(s) 930
BspACI CCGC 6 cut(s) 32, 35, 38, 41, 47, 1228
BspANI GGCC 5 cut(s) 92, 97, 367, 853, 1523
BspCNI CTCAG 6 cut(s) 23, 127, 259, 1045, 1645, 2117
BspDI ATCGAT 1 cut(s) 588
BspFNI CGCG 1 cut(s) 930
BspHI TCATGA 2 cut(s) 1017, 1267
BspLI GGNNCC 4 cut(s) 310, 911, 912, 1764
BspMAI CTGCAG 2 cut(s) 623, 1530
BspPI GGATC 2 cut(s) 1846, 1987
BspT104I TTCGAA 2 cut(s) 604, 1453
BspTI CTTAAG 1 cut(s) 641
BspTNI GGTCTC 1 cut(s) 1498
BsrBI CCGCTC 1 cut(s) 1228
BsrGI TGTACA 3 cut(s) 579, 671, 1407
BsrI ACTGG 6 cut(s) 452, 736, 758, 1764, 1785, 1852
BssECI CCNNGG 3 cut(s) 335, 1424, 1638
BssMI GATC 6 cut(s) 265, 631, 1165, 1588, 1838, 1979
Bst2UI CCWGG 6 cut(s) 336, 554, 1136, 1425, 1640, 1767
Bst4CI ACNGT 6 cut(s) 383, 601, 843, 935, 1293, 1378
Bst6I CTCTTC 2 cut(s) 876, 1571
BstAFI CTTAAG 1 cut(s) 641
BstAPI GCANNNNNTGC 3 cut(s) 1157, 1304, 1682
BstAUI TGTACA 3 cut(s) 579, 671, 1407
BstBI TTCGAA 2 cut(s) 604, 1453
BstC8I GCNNGC 5 cut(s) 45, 809, 1173, 1807, 2056
BstDEI CTNAG 6 cut(s) 10, 114, 246, 1053, 1632, 2104
BstF5I GGATG 3 cut(s) 286, 892, 1434
BstFNI CGCG 1 cut(s) 930
BstKTI GATC 6 cut(s) 268, 634, 1168, 1591, 1841, 1982
BstMAI GTCTC 3 cut(s) 1498, 1561, 1688
BstMBI GATC 6 cut(s) 265, 631, 1165, 1588, 1838, 1979
BstMCI CGRYCG 3 cut(s) 93, 934, 1502
BstMWI GCNNNNNNNGC 7 cut(s) 40, 53, 1033, 1157, 1304, 1682, 1959
BstNI CCWGG 6 cut(s) 336, 554, 1136, 1425, 1640, 1767
BstNSI RCATGY 1 cut(s) 811
BstSCI CCNGG 8 cut(s) 92, 152, 334, 552, 1134, 1423, 1638, 1765
BstSFI CTRYAG 3 cut(s) 313, 619, 1526
BstSLI GKGCMC 1 cut(s) 1300
BstUI CGCG 1 cut(s) 930
BstV1I GCAGC 3 cut(s) 166, 605, 1540
BstV2I GAAGAC 2 cut(s) 396, 555
BstZI CGGCCG 1 cut(s) 90
Bsu15I ATCGAT 1 cut(s) 588
BsuI GTATCC 3 cut(s) 251, 1225, 1273
BsuRI GGCC 5 cut(s) 92, 97, 367, 853, 1523
BsuTUI ATCGAT 1 cut(s) 588
BtgZI GCGATG 1 cut(s) 862
BtsCI GGATG 3 cut(s) 286, 892, 1434
BtsI GCAGTG 1 cut(s) 1902
BtsIMutI CAGTG 4 cut(s) 848, 1298, 1792, 1902
BtuMI TCGCGA 1 cut(s) 930
Cac8I GCNNGC 5 cut(s) 45, 809, 1173, 1807, 2056
CciI TCATGA 2 cut(s) 1017, 1267
Cfr13I GGNCC 5 cut(s) 95, 332, 365, 910, 1522
ClaI ATCGAT 1 cut(s) 588
Csp6I GTAC 7 cut(s) 326, 542, 580, 672, 936, 1005, 1408
CviAII CATG 7 cut(s) 329, 467, 808, 865, 1018, 1268, 1810
CviQI GTAC 7 cut(s) 326, 542, 580, 672, 936, 1005, 1408
DdeI CTNAG 6 cut(s) 10, 114, 246, 1053, 1632, 2104
DpnI GATC 6 cut(s) 267, 633, 1167, 1590, 1840, 1981
DpnII GATC 6 cut(s) 265, 631, 1165, 1588, 1838, 1979
DraIII CACNNNGTG 3 cut(s) 357, 843, 1304
EaeI YGGCCR 2 cut(s) 90, 851
EagI CGGCCG 1 cut(s) 90
Eam1104I CTCTTC 2 cut(s) 876, 1571
EarI CTCTTC 2 cut(s) 876, 1571
Ecl136II GAGCTC 1 cut(s) 9
EclXI CGGCCG 1 cut(s) 90
Eco24I GRGCYC 2 cut(s) 11, 760
Eco31I GGTCTC 1 cut(s) 1498
Eco47I GGWCC 2 cut(s) 332, 910
Eco52I CGGCCG 1 cut(s) 90
Eco53kI GAGCTC 1 cut(s) 9
Eco57I CTGAAG 2 cut(s) 123, 1595
Eco88I CYCGRG 1 cut(s) 771
EcoICRI GAGCTC 1 cut(s) 9
EcoO109I RGGNCCY 1 cut(s) 910
EcoRII CCWGG 6 cut(s) 334, 552, 1134, 1423, 1638, 1765
EcoT38I GRGCYC 2 cut(s) 11, 760
FaeI CATG 7 cut(s) 332, 470, 811, 868, 1021, 1271, 1813
FalI AAGNNNNNCTT 2 cut(s) 141, 173
FaqI GGGAC 2 cut(s) 923, 1387
FatI CATG 7 cut(s) 328, 466, 807, 864, 1017, 1267, 1809
FauI CCCGC 1 cut(s) 1221
FauNDI CATATG 1 cut(s) 945
FbaI TGATCA 1 cut(s) 631
FblI GTMKAC 2 cut(s) 834, 1140
Fnu4HI GCNGC 6 cut(s) 35, 38, 41, 180, 619, 1529
FokI GGATG 3 cut(s) 293, 899, 1441
FriOI GRGCYC 2 cut(s) 11, 760
Fsp4HI GCNGC 6 cut(s) 35, 38, 41, 180, 619, 1529
FspBI CTAG 4 cut(s) 804, 984, 1077, 1512
GluI GCNGC 6 cut(s) 35, 38, 41, 180, 619, 1529
GsaI CCCAGC 1 cut(s) 1189
GsuI CTGGAG 4 cut(s) 1118, 1674, 1781, 1788
HaeIII GGCC 5 cut(s) 92, 97, 367, 853, 1523
HapII CCGG 3 cut(s) 93, 153, 1752
Hin1II CATG 7 cut(s) 332, 470, 811, 868, 1021, 1271, 1813
HincII GTYRAC 4 cut(s) 379, 782, 1141, 1945
HindII GTYRAC 4 cut(s) 379, 782, 1141, 1945
HindIII AAGCTT 2 cut(s) 137, 644
HinfI GANTC 9 cut(s) 831, 1193, 1213, 1643, 1666, 1730, 1925, 1931, 2036
HpaI GTTAAC 1 cut(s) 1945
HpaII CCGG 3 cut(s) 93, 153, 1752
HphI GGTGA 7 cut(s) 16, 21, 194, 1247, 1349, 1574, 1766
Hpy166II GTNNAC 9 cut(s) 379, 751, 782, 835, 1141, 1298, 1496, 1757, 1945
Hpy188I TCNGA 9 cut(s) 13, 117, 565, 683, 1054, 1551, 1930, 2086, 2107
Hpy8I GTNNAC 9 cut(s) 379, 751, 782, 835, 1141, 1298, 1496, 1757, 1945
Hpy99I CGWCG 2 cut(s) 91, 1555
HpyAV CCTTC 5 cut(s) 1452, 1479, 1874, 1982, 2069
HpyCH4III ACNGT 6 cut(s) 383, 601, 843, 935, 1293, 1378
HpyCH4IV ACGT 2 cut(s) 1449, 1745
HpyF10VI GCNNNNNNNGC 7 cut(s) 40, 53, 1033, 1157, 1304, 1682, 1959
HpyF3I CTNAG 6 cut(s) 10, 114, 246, 1053, 1632, 2104
HpySE526I ACGT 2 cut(s) 1449, 1745
Hsp92II CATG 7 cut(s) 332, 470, 811, 868, 1021, 1271, 1813
KflI GGGWCCC 1 cut(s) 910
Ksp22I TGATCA 1 cut(s) 631
KspAI GTTAAC 1 cut(s) 1945
Kzo9I GATC 6 cut(s) 265, 631, 1165, 1588, 1838, 1979
LmnI GCTCC 2 cut(s) 1024, 1762
Lsp1109I GCAGC 3 cut(s) 166, 605, 1540
LweI GCATC 7 cut(s) 271, 451, 674, 1147, 1694, 1762, 1816
MaeI CTAG 4 cut(s) 804, 984, 1077, 1512
MaeII ACGT 2 cut(s) 1449, 1745
MaeIII GTNAC 7 cut(s) 70, 436, 727, 1245, 1253, 1792, 1898
MalI GATC 6 cut(s) 267, 633, 1167, 1590, 1840, 1981
MbiI CCGCTC 1 cut(s) 1228
MboI GATC 6 cut(s) 265, 631, 1165, 1588, 1838, 1979
MhlI GDGCHC 4 cut(s) 11, 760, 1090, 1300
MlsI TGGCCA 1 cut(s) 853
MluCI AATT 9 cut(s) 62, 207, 636, 951, 1411, 1434, 1659, 1780, 2109
MluNI TGGCCA 1 cut(s) 853
MlyI GAGTC 4 cut(s) 840, 1207, 1660, 1919
MmeI TCCRAC 2 cut(s) 111, 1574
Mox20I TGGCCA 1 cut(s) 853
MroXI GAANNNNTTC 1 cut(s) 1344
MscI TGGCCA 1 cut(s) 853
MseI TTAA 8 cut(s) 222, 486, 612, 642, 900, 1944, 2009, 2100
MslI CAYNNNNRTG 4 cut(s) 682, 1272, 1403, 1536
Msp20I TGGCCA 1 cut(s) 853
MspCI CTTAAG 1 cut(s) 641
MspI CCGG 3 cut(s) 93, 153, 1752
MspR9I CCNGG 8 cut(s) 94, 154, 336, 554, 1136, 1425, 1640, 1767
MvaI CCWGG 6 cut(s) 336, 554, 1136, 1425, 1640, 1767
MvnI CGCG 1 cut(s) 930
MwoI GCNNNNNNNGC 7 cut(s) 40, 53, 1033, 1157, 1304, 1682, 1959
NciI CCSGG 2 cut(s) 94, 154
NdeI CATATG 1 cut(s) 945
NdeII GATC 6 cut(s) 265, 631, 1165, 1588, 1838, 1979
NlaIII CATG 7 cut(s) 332, 470, 811, 868, 1021, 1271, 1813
NlaIV GGNNCC 4 cut(s) 310, 911, 912, 1764
NmuCI GTSAC 3 cut(s) 70, 436, 1253
NruI TCGCGA 1 cut(s) 930
NspI RCATGY 1 cut(s) 811
NspV TTCGAA 2 cut(s) 604, 1453
PaeI GCATGC 1 cut(s) 811
PagI TCATGA 2 cut(s) 1017, 1267
PdmI GAANNNNTTC 1 cut(s) 1344
PfeI GAWTC 5 cut(s) 1193, 1643, 1730, 1931, 2036
PkrI GCNGC 6 cut(s) 36, 39, 42, 181, 620, 1530
PleI GAGTC 4 cut(s) 839, 1207, 1660, 1919
PpsI GAGTC 4 cut(s) 839, 1207, 1660, 1919
PpuMI RGGWCCY 1 cut(s) 910
PsiI TTATAA 1 cut(s) 956
Psp124BI GAGCTC 1 cut(s) 11
Psp1406I AACGTT 1 cut(s) 1745
Psp5II RGGWCCY 1 cut(s) 910
Psp6I CCWGG 6 cut(s) 334, 552, 1134, 1423, 1638, 1765
PspFI CCCAGC 1 cut(s) 1185
PspGI CCWGG 6 cut(s) 334, 552, 1134, 1423, 1638, 1765
PspN4I GGNNCC 4 cut(s) 310, 911, 912, 1764
PspPI GGNCC 5 cut(s) 95, 332, 365, 910, 1522
PspPPI RGGWCCY 1 cut(s) 910
PsrI GAACNNNNNNTAC 2 cut(s) 971, 1003
PstI CTGCAG 2 cut(s) 623, 1530
RruI TCGCGA 1 cut(s) 930
RsaI GTAC 7 cut(s) 327, 543, 581, 673, 937, 1006, 1409
RsaNI GTAC 7 cut(s) 326, 542, 580, 672, 936, 1005, 1408
RseI CAYNNNNRTG 4 cut(s) 682, 1272, 1403, 1536
SacI GAGCTC 1 cut(s) 11
SalI GTCGAC 1 cut(s) 1139
SaqAI TTAA 8 cut(s) 222, 486, 612, 642, 900, 1944, 2009, 2100
SatI GCNGC 6 cut(s) 35, 38, 41, 180, 619, 1529
Sau3AI GATC 6 cut(s) 265, 631, 1165, 1588, 1838, 1979
Sau96I GGNCC 5 cut(s) 95, 332, 365, 910, 1522
SchI GAGTC 4 cut(s) 840, 1207, 1660, 1919
ScrFI CCNGG 8 cut(s) 94, 154, 336, 554, 1136, 1425, 1640, 1767
SduI GDGCHC 4 cut(s) 11, 760, 1090, 1300
SfaNI GCATC 7 cut(s) 271, 451, 674, 1147, 1694, 1762, 1816
SfcI CTRYAG 3 cut(s) 313, 619, 1526
SfuI TTCGAA 2 cut(s) 604, 1453
SinI GGWCC 2 cut(s) 332, 910
SmiMI CAYNNNNRTG 4 cut(s) 682, 1272, 1403, 1536
SmlI CTYRAG 1 cut(s) 641
SmoI CTYRAG 1 cut(s) 641
SphI GCATGC 1 cut(s) 811
Sse9I AATT 9 cut(s) 62, 207, 636, 951, 1411, 1434, 1659, 1780, 2109
SsiI CCGC 6 cut(s) 32, 35, 38, 41, 47, 1228
SspMI CTAG 4 cut(s) 804, 984, 1077, 1512
SstI GAGCTC 1 cut(s) 11
StyD4I CCNGG 8 cut(s) 92, 152, 334, 552, 1134, 1423, 1638, 1765
TaaI ACNGT 6 cut(s) 383, 601, 843, 935, 1293, 1378
TaiI ACGT 2 cut(s) 1452, 1748
TaqI TCGA 8 cut(s) 86, 507, 588, 604, 820, 1140, 1362, 1453
TaqII GACCGA 1 cut(s) 1516
TasI AATT 9 cut(s) 62, 207, 636, 951, 1411, 1434, 1659, 1780, 2109
TatI WGTACW 3 cut(s) 579, 671, 1407
TauI GCSGC 3 cut(s) 37, 40, 43
TfiI GAWTC 5 cut(s) 1193, 1643, 1730, 1931, 2036
Tru1I TTAA 8 cut(s) 222, 486, 612, 642, 900, 1944, 2009, 2100
Tru9I TTAA 8 cut(s) 222, 486, 612, 642, 900, 1944, 2009, 2100
TscAI CASTG 4 cut(s) 848, 1298, 1792, 1909
TseFI GTSAC 3 cut(s) 70, 436, 1253
TseI GCWGC 3 cut(s) 179, 618, 1528
Tsp45I GTSAC 3 cut(s) 70, 436, 1253
TspDTI ATGAA 4 cut(s) 903, 992, 1554, 2034
TspGWI ACGGA 3 cut(s) 30, 1001, 1962
TspRI CASTG 4 cut(s) 848, 1298, 1792, 1909
Vha464I CTTAAG 1 cut(s) 641
VneI GTGCAC 1 cut(s) 1296
VpaK11BI GGWCC 2 cut(s) 332, 910
XapI RAATTY 2 cut(s) 636, 1434
XbaI TCTAGA 1 cut(s) 1511
XceI RCATGY 1 cut(s) 811
XmiI GTMKAC 2 cut(s) 834, 1140
XmnI GAANNNNTTC 1 cut(s) 1344
XspI CTAG 4 cut(s) 804, 984, 1077, 1512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.