Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005201.1

Orthogroup ID

OG0000312

Physical Location & Seq

Genomic Coordinates Forward (+)

5391 .. 9760

Gene Structure 4370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005201.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2316 bp

atggcggcctctgagagtcggaaacatgcttcgtcttcttcgtctgagactccacagccgccgaggagttacggcatcacgaagccgatttttctctccgggccgtcgcagtctgatcgtcaacgaaatatcgaactcgagaagttcttggttgattcggggctgtatgagagcaaagacgaggctgcgaaaagagaagaggttcttggctgcattggtcagattgtgaaagactgggtgaaacaattgacacgccagagaggctacacggatcagatggtggaggatgcaaatgctgtcatttttacttttggatcgtatcggcttggggtccatgggcctggagctgatatagatactttgtgtgttggaccatcatatgtgaatcgagaggaggatttttttattattttgcatgacatcctgtgtgaaatggaagaggtaactgaacttcaacgagttcctgatgctcatgtcccagtcatgaaattcaagtttcagggaatatcaattgatcttctgtatgcaagcatatctctcttggttgtcccagaggatctggacatctcagatgaatctgtgctatgcaatgttgacgagcaaactgttcgaagtctgaatggttgcagggttgcagatcaaattcttaagcttgttccaaatgttgagcacttccgcacaacactcaggtgtttgaagttttggggcaaaaggcgcggtgtatattctaatgttactggatttcttggtggtgtaaattgggctattttagttgctcggatatgtcagctttatcccaatgcaaatcctagtatgttggtttctcggtttttcagagtgtacactcagtggcgttggccaaatcctgtacttctttgttcaatagaagagaatgaacttgggttacctacatgggatcctcgtaaaaaccctcaggatcgctttcatcatatgccgataataactcctgcatacccttgtatgaactctagttacaatgtctcagtaagtactctacgtgttatgacagagcagttccaccatggtaataggatatgtgaggagattgagctgaagaaaagccagtggagcgctctgtttgaaccttatcttttcttcgaggcatacaaaaactatctgcaggtggacatagtagcagccgatgctgatgatttgttggcgtggaaggggtgggtggaatctcggcttagacagctcaccttgaagatagagcgagacacaagtggaatgcttcagtgccatccatatccaaaggagtatacagacgcatccaagccttgtgcgcattgtgctttctttatgggtttgcagaggaaagaaggagtaagaggtcaagaaggtcagcaatttgatatacgcggaacagtcgatgagttcaggcttgatgtaaacaggtatggattttggaaaccttgcatggacatgcatgtttgtcatgttcgccggaagcagcttcctccctttgtcttccccgatgggtataaacggtcgcggttatcaagacatataagccagcaagatgaaggaacttatgaagaaccctctgggcctattgaaagacatatcaggaggaaaattaatcctaaaacagaggacatgaggccaagtgaactagagaagcagacctctattagcccactacggatggaatctgtatccccagaaagtattgcaggtatatctggtggaacacctaatcctagcttcagtaatggtggtagattagagtgtctaccaactggaggcaattctggtggacaattggagagtgtaaagggtaccatggtacctgtggggttagttgaaaatgttgtgcggcaatccattgctgaaaatgaatcaacagctatgtgtgcttctgaattccctacggtccagaagccttcagaagagggtaaggagttggtacatccgtctgcaatatctttctcggaatccaaggaaacatgccagattgaaataaatggggacagagttggaaatgtggttttggtggacgggaagaatatggagactgactctactggtagtgtgctgaattggacagaaggtgctattgatgttgaccaagaattagtcaaaccatgcagtcagactatgggggtggagaatgctgaaggtgtattaaaatcaacttccagcaatcggaacctcaattgcgaggatgatttactttcatcaggagcacagttccttcggaaaagtggcactggaaatctgcacggcccaactgtaatcgcatatgctgtcaatttggaagctggagctaggttaagtctgagatcaatggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004652 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

NTP_transf_2 PAP_RNA-bind PAP_central

Protein Analysis

771

Amino Acids

86.5

Weight (kDa)

5.57

Isoelectric Point (pI)

47.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850
fragaria_vesca	FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471
malus_domestica	MD08G1110400.v1.1 MD09G1202000.v1.1 MD09G1202100.v1.1 MD17G1182800.v1.1
prunus_persica	Prupe.1G444600_v2.0.a1 Prupe.3G057600_v2.0.a1 Prupe.3G057600_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1
pyrus_communis	pycom08g09190 pycom09g11890 pycom15g08420 pycom17g19200
rosa_chinensis	RchiOBHm_Chr2g0140721 RchiOBHm_Chr2g0140741 RchiOBHm_Chr2g0140761 RchiOBHm_Chr6g0306691
rosa_laevigata	RLG00000010773 RLG00000019895 RLG00000019896
rosa_multiflora	Rmu_co8193342.1_g000001 Rmu_sc0003342.1_g000015 Rmu_sc0003342.1_g000021 Rmu_sc0003342.1_g000026 Rmu_sc0005201.1_g000002 Rmu_sc0017785.1_g000009
rosa_roxburghii	Rroxscaffold_2G00104510 Rroxscaffold_2G00104540 Rroxscaffold_7G00161540
rosa_rugosa	Rorug02G0364600 Rorug02G0364700 Rorug02G0364800 Rorug02G0364900 Rorug02G0365000 Rorug06G0351600 Rorug06G0351700
rosa_samantha	Rh2AG416100 Rh2AG416200 Rh2AG416300 Rh2BG425700 Rh2BG425800 Rh2BG425900 Rh2CG402300 Rh2CG402400 Rh2CG402500 Rh2DG435600 Rh2DG435700 Rh2DG435800 Rh6AG464000 Rh6BG437000 Rh6CG478100 Rh6DG464900
rosa_wichuraiana	Rw2G034050 Rw2G034060 Rw6G040420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1132
Acc16I	TGCGCA	1 cut(s)	1305
Acc36I	ACCTGC	2 cut(s)	1132, 1685
Acc65I	GGTACC	2 cut(s)	1799, 1807
AccB1I	GGYRCC	2 cut(s)	1799, 1807
AccI	GTMKAC	2 cut(s)	1280, 1753
AccII	CGCG	3 cut(s)	717, 1380, 1513
AciI	CCGC	7 cut(s)	5, 59, 676, 717, 1380, 1513, 1837
AclWI	GGATC	6 cut(s)	279, 322, 564, 911, 924, 945
AcoI	YGGCCR	1 cut(s)	857
AcsI	RAATTY	3 cut(s)	488, 642, 1883
AcuI	CTGAAG	5 cut(s)	1094, 1238, 1711, 1890, 2157
AdeI	CACNNNGTG	1 cut(s)	849
AfaI	GTAC	6 cut(s)	842, 870, 1012, 1801, 1809, 1929
AfeI	AGCGCT	1 cut(s)	1093
AfiI	CCNNNNNNNGG	2 cut(s)	1763, 2166
AflII	CTTAAG	1 cut(s)	647
AflIII	ACRYGT	1 cut(s)	1018
AgsI	TTSAA	9 cut(s)	455, 493, 697, 882, 1103, 1225, 1577, 1826, 1979
AjnI	CCWGG	1 cut(s)	340
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
AleI	CACNNNNGTG	1 cut(s)	688
AloI	GAACNNNNNNTCC	2 cut(s)	1702, 1734
Alw21I	GWGCWC	2 cut(s)	672, 2209
Alw26I	GTCTC	4 cut(s)	41, 1006, 1230, 2027
AlwI	GGATC	6 cut(s)	279, 322, 564, 911, 924, 945
Ama87I	CYCGRG	1 cut(s)	137
Aor51HI	AGCGCT	1 cut(s)	1093
AoxI	GGCC	7 cut(s)	6, 101, 338, 857, 1568, 1622, 2245
ApeKI	GCWGC	4 cut(s)	185, 210, 1157, 1471
ApoI	RAATTY	3 cut(s)	488, 642, 1883
AseI	ATTAAT	1 cut(s)	1599
Asp700I	GAANNNNTTC	1 cut(s)	201
Asp718I	GGTACC	2 cut(s)	1799, 1807
AspLEI	GCGC	3 cut(s)	717, 1094, 1306
AspS9I	GGNCC	7 cut(s)	101, 331, 338, 371, 1568, 1894, 2246
AsuC2I	CCSGG	1 cut(s)	100
AsuHPI	GGTGA	2 cut(s)	250, 1210
AsuII	TTCGAA	1 cut(s)	610
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	3 cut(s)	331, 371, 1894
AxyI	CCTNAGG	1 cut(s)	933
BaeI	ACNNNNGTAYC	6 cut(s)	1791, 1791, 1824, 1824, 1919, 1952
BalI	TGGCCA	1 cut(s)	859
BamHI	GGATCC	1 cut(s)	916
BanI	GGYRCC	2 cut(s)	1799, 1807
BarI	GAAGNNNNNNTAC	2 cut(s)	435, 467
BbsI	GAAGAC	2 cut(s)	27, 1480
Bbv12I	GWGCWC	2 cut(s)	672, 2209
BbvI	GCAGC	4 cut(s)	172, 197, 1169, 1483
BccI	CCATC	5 cut(s)	271, 382, 1269, 1490, 1660
BceAI	ACGGC	3 cut(s)	88, 88, 2260
BcgI	CGANNNNNNTGC	4 cut(s)	98, 132, 590, 624
BciT130I	CCWGG	1 cut(s)	342
BciVI	GTATCC	1 cut(s)	1687
BcnI	CCSGG	1 cut(s)	100
BcoDI	GTCTC	4 cut(s)	41, 1006, 1230, 2027
BfaI	CTAG	5 cut(s)	810, 990, 1634, 1722, 2289
BfmI	CTRYAG	1 cut(s)	1139
BfoI	RGCGCY	1 cut(s)	1095
BfrI	CTTAAG	1 cut(s)	647
BfuAI	ACCTGC	2 cut(s)	1132, 1685
BfuI	GTATCC	1 cut(s)	1687
BglI	GCCNNNNNGGC	1 cut(s)	261
BisI	GCNGC	7 cut(s)	6, 59, 186, 211, 1158, 1472, 1838
BlsI	GCNGC	7 cut(s)	7, 60, 187, 212, 1159, 1473, 1839
BmcAI	AGTACT	1 cut(s)	1012
Bme1390I	CCNGG	2 cut(s)	100, 342
Bme18I	GGWCC	3 cut(s)	331, 371, 1894
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	7 cut(s)	101, 331, 338, 371, 1568, 1894, 2246
BmiI	GGNNCC	5 cut(s)	332, 918, 1801, 1809, 2171
BmrFI	CCNGG	2 cut(s)	100, 342
BmrI	ACTGGG	2 cut(s)	244, 473
BmsI	GCATC	5 cut(s)	84, 277, 457, 1153, 1298
BmuI	ACTGGG	2 cut(s)	244, 473
BpiI	GAAGAC	2 cut(s)	27, 1480
BplI	GAGNNNNNCTC	2 cut(s)	2024, 2056
BpmI	CTGGAG	3 cut(s)	363, 1782, 2304
Bpu14I	TTCGAA	1 cut(s)	610
BpuMI	CCSGG	1 cut(s)	100
BsaAI	YACGTR	1 cut(s)	1019
BsaJI	CCNNGG	5 cut(s)	62, 334, 1042, 1803, 1959
Bsc4I	CCNNNNNNNGG	2 cut(s)	1763, 2166
Bse1I	ACTGG	7 cut(s)	239, 479, 742, 1084, 1765, 2050, 2236
Bse21I	CCTNAGG	1 cut(s)	933
Bse3DI	GCAATG	2 cut(s)	595, 1845
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	5 cut(s)	62, 334, 1042, 1803, 1959
BseGI	GGATG	7 cut(s)	292, 420, 1261, 1289, 1671, 1930, 2191
BseLI	CCNNNNNNNGG	2 cut(s)	1763, 2166
BseMI	GCAATG	2 cut(s)	595, 1845
BseMII	CTCAG	7 cut(s)	36, 582, 700, 860, 947, 1017, 2291
BseNI	ACTGG	7 cut(s)	239, 479, 742, 1084, 1765, 2050, 2236
BseRI	GAGGAG	3 cut(s)	79, 407, 1076
BseXI	GCAGC	4 cut(s)	172, 197, 1169, 1483
BsgI	GTGCAG	1 cut(s)	2225
Bsh1236I	CGCG	3 cut(s)	717, 1380, 1513
Bsh1285I	CGRYCG	1 cut(s)	1511
BshFI	GGCC	7 cut(s)	8, 103, 340, 859, 1570, 1624, 2247
BshNI	GGYRCC	2 cut(s)	1799, 1807
BsiEI	CGRYCG	1 cut(s)	1511
BsiHKAI	GWGCWC	2 cut(s)	672, 2209
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	2 cut(s)	99, 1465
BslFI	GGGAC	3 cut(s)	461, 533, 2003
BslI	CCNNNNNNNGG	2 cut(s)	1763, 2166
BsmAI	GTCTC	4 cut(s)	41, 1006, 1230, 2027
BsmFI	GGGAC	3 cut(s)	461, 533, 2003
BsmI	GAATGC	2 cut(s)	1254, 2137
BsnI	GGCC	7 cut(s)	8, 103, 340, 859, 1570, 1624, 2247
BsoBI	CYCGRG	1 cut(s)	137
Bsp119I	TTCGAA	1 cut(s)	610
Bsp1286I	GDGCHC	2 cut(s)	672, 2209
Bsp1407I	TGTACA	1 cut(s)	840
Bsp143I	GATC	9 cut(s)	115, 271, 314, 514, 556, 637, 916, 937, 2303
Bsp19I	CCATGG	3 cut(s)	334, 1042, 1803
BspACI	CCGC	7 cut(s)	5, 59, 676, 717, 1380, 1513, 1837
BspANI	GGCC	7 cut(s)	8, 103, 340, 859, 1570, 1624, 2247
BspCNI	CTCAG	8 cut(s)	4, 37, 581, 699, 859, 946, 1016, 2292
BspFNI	CGCG	3 cut(s)	717, 1380, 1513
BspHI	TCATGA	1 cut(s)	483
BspLI	GGNNCC	5 cut(s)	332, 918, 1801, 1809, 2171
BspMAI	CTGCAG	1 cut(s)	1143
BspMI	ACCTGC	2 cut(s)	1132, 1685
BspPI	GGATC	6 cut(s)	279, 322, 564, 911, 924, 945
BspT104I	TTCGAA	1 cut(s)	610
BspT107I	GGYRCC	2 cut(s)	1799, 1807
BspTI	CTTAAG	1 cut(s)	647
BsrDI	GCAATG	2 cut(s)	595, 1845
BsrGI	TGTACA	1 cut(s)	840
BsrI	ACTGG	7 cut(s)	239, 479, 742, 1084, 1765, 2050, 2236
BssECI	CCNNGG	5 cut(s)	62, 334, 1042, 1803, 1959
BssMI	GATC	9 cut(s)	115, 271, 314, 514, 556, 637, 916, 937, 2303
BssNAI	GTATAC	1 cut(s)	1281
BssT1I	CCWWGG	4 cut(s)	334, 1042, 1803, 1959
Bst1107I	GTATAC	1 cut(s)	1281
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	6 cut(s)	607, 1387, 1509, 1894, 2211, 2254
Bst6I	CTCTTC	4 cut(s)	192, 432, 882, 1905
BstAFI	CTTAAG	1 cut(s)	647
BstAPI	GCANNNNNTGC	1 cut(s)	1163
BstAUI	TGTACA	1 cut(s)	840
BstBAI	YACGTR	1 cut(s)	1019
BstBI	TTCGAA	1 cut(s)	610
BstC8I	GCNNGC	2 cut(s)	529, 1535
BstDEI	CTNAG	9 cut(s)	12, 45, 568, 686, 846, 933, 1003, 1208, 2300
BstDSI	CCRYGG	3 cut(s)	334, 1042, 1803
BstEII	GGTNACC	1 cut(s)	903
BstF5I	GGATG	7 cut(s)	292, 420, 1261, 1289, 1671, 1930, 2191
BstFNI	CGCG	3 cut(s)	717, 1380, 1513
BstH2I	RGCGCY	1 cut(s)	1095
BstHHI	GCGC	3 cut(s)	717, 1094, 1306
BstKTI	GATC	9 cut(s)	118, 274, 317, 517, 559, 640, 919, 940, 2306
BstMAI	GTCTC	4 cut(s)	41, 1006, 1230, 2027
BstMBI	GATC	9 cut(s)	115, 271, 314, 514, 556, 637, 916, 937, 2303
BstMCI	CGRYCG	1 cut(s)	1511
BstMWI	GCNNNNNNNGC	8 cut(s)	261, 714, 1089, 1163, 1213, 1303, 1310, 1874
BstNI	CCWGG	1 cut(s)	342
BstNSI	RCATGY	4 cut(s)	29, 1447, 1451, 1971
BstPI	GGTNACC	1 cut(s)	903
BstSCI	CCNGG	2 cut(s)	98, 340
BstSFI	CTRYAG	1 cut(s)	1139
BstUI	CGCG	3 cut(s)	717, 1380, 1513
BstV1I	GCAGC	4 cut(s)	172, 197, 1169, 1483
BstV2I	GAAGAC	2 cut(s)	27, 1480
BstX2I	RGATCY	2 cut(s)	556, 916
BstXI	CCANNNNNNTGG	1 cut(s)	341
BstYI	RGATCY	2 cut(s)	556, 916
BstZ17I	GTATAC	1 cut(s)	1281
Bsu36I	CCTNAGG	1 cut(s)	933
BsuI	GTATCC	1 cut(s)	1687
BsuRI	GGCC	7 cut(s)	8, 103, 340, 859, 1570, 1624, 2247
BtgI	CCRYGG	3 cut(s)	334, 1042, 1803
BtsCI	GGATG	7 cut(s)	292, 420, 1261, 1289, 1671, 1930, 2191
BtsIMutI	CAGTG	4 cut(s)	854, 1091, 1262, 2229
BveI	ACCTGC	2 cut(s)	1132, 1685
Cac8I	GCNNGC	2 cut(s)	529, 1535
CciI	TCATGA	1 cut(s)	483
CfoI	GCGC	3 cut(s)	717, 1094, 1306
Cfr13I	GGNCC	7 cut(s)	101, 331, 338, 371, 1568, 1894, 2246
CseI	GACGC	1 cut(s)	1295
Csp6I	GTAC	6 cut(s)	841, 869, 1011, 1800, 1808, 1928
CspCI	CAANNNNNGTGG	2 cut(s)	1756, 1791
CviQI	GTAC	6 cut(s)	841, 869, 1011, 1800, 1808, 1928
DdeI	CTNAG	9 cut(s)	12, 45, 568, 686, 846, 933, 1003, 1208, 2300
DpnI	GATC	9 cut(s)	117, 273, 316, 516, 558, 639, 918, 939, 2305
DpnII	GATC	9 cut(s)	115, 271, 314, 514, 556, 637, 916, 937, 2303
DraIII	CACNNNGTG	1 cut(s)	849
EaeI	YGGCCR	1 cut(s)	857
Eam1104I	CTCTTC	4 cut(s)	192, 432, 882, 1905
EarI	CTCTTC	4 cut(s)	192, 432, 882, 1905
Eco130I	CCWWGG	4 cut(s)	334, 1042, 1803, 1959
Eco47I	GGWCC	3 cut(s)	331, 371, 1894
Eco47III	AGCGCT	1 cut(s)	1093
Eco57I	CTGAAG	5 cut(s)	1094, 1238, 1711, 1890, 2157
Eco81I	CCTNAGG	1 cut(s)	933
Eco88I	CYCGRG	1 cut(s)	137
Eco91I	GGTNACC	1 cut(s)	903
EcoO65I	GGTNACC	1 cut(s)	903
EcoRI	GAATTC	1 cut(s)	1883
EcoRII	CCWGG	1 cut(s)	340
EcoT14I	CCWWGG	4 cut(s)	334, 1042, 1803, 1959
EcoT22I	ATGCAT	1 cut(s)	1449
ErhI	CCWWGG	4 cut(s)	334, 1042, 1803, 1959
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FaqI	GGGAC	3 cut(s)	461, 533, 2003
FauNDI	CATATG	3 cut(s)	379, 951, 2263
FblI	GTMKAC	2 cut(s)	1280, 1753
Fnu4HI	GCNGC	7 cut(s)	6, 59, 186, 211, 1158, 1472, 1838
FokI	GGATG	7 cut(s)	299, 407, 1248, 1276, 1678, 1917, 2198
Fsp4HI	GCNGC	7 cut(s)	6, 59, 186, 211, 1158, 1472, 1838
FspAI	RTGCGCAY	1 cut(s)	1305
FspBI	CTAG	5 cut(s)	810, 990, 1634, 1722, 2289
FspI	TGCGCA	1 cut(s)	1305
GlaI	GCGC	3 cut(s)	716, 1093, 1305
GluI	GCNGC	7 cut(s)	6, 59, 186, 211, 1158, 1472, 1838
GsuI	CTGGAG	3 cut(s)	363, 1782, 2304
HaeII	RGCGCY	1 cut(s)	1095
HaeIII	GGCC	7 cut(s)	8, 103, 340, 859, 1570, 1624, 2247
HapII	CCGG	2 cut(s)	99, 1465
HgaI	GACGC	1 cut(s)	1295
HhaI	GCGC	3 cut(s)	717, 1094, 1306
Hin6I	GCGC	3 cut(s)	715, 1092, 1304
HinP1I	GCGC	3 cut(s)	715, 1092, 1304
HincII	GTYRAC	3 cut(s)	122, 595, 2086
HindII	GTYRAC	3 cut(s)	122, 595, 2086
HindIII	AAGCTT	1 cut(s)	650
HpaII	CCGG	2 cut(s)	99, 1465
HphI	GGTGA	2 cut(s)	250, 1210
Hpy99I	CGWCG	1 cut(s)	109
HpyAV	CCTTC	8 cut(s)	1180, 1334, 1352, 1538, 1914, 2063, 2132, 2225
HpyCH4III	ACNGT	6 cut(s)	607, 1387, 1509, 1894, 2211, 2254
HpyCH4IV	ACGT	1 cut(s)	1018
HpyF10VI	GCNNNNNNNGC	8 cut(s)	261, 714, 1089, 1163, 1213, 1303, 1310, 1874
HpyF3I	CTNAG	9 cut(s)	12, 45, 568, 686, 846, 933, 1003, 1208, 2300
HpySE526I	ACGT	1 cut(s)	1018
HspAI	GCGC	3 cut(s)	715, 1092, 1304
KpnI	GGTACC	2 cut(s)	1803, 1811
Kzo9I	GATC	9 cut(s)	115, 271, 314, 514, 556, 637, 916, 937, 2303
LmnI	GCTCC	4 cut(s)	344, 1089, 2204, 2285
Lsp1109I	GCAGC	4 cut(s)	172, 197, 1169, 1483
LweI	GCATC	5 cut(s)	84, 277, 457, 1153, 1298
MaeI	CTAG	5 cut(s)	810, 990, 1634, 1722, 2289
MaeII	ACGT	1 cut(s)	1018
MaeIII	GTNAC	5 cut(s)	68, 442, 733, 903, 992
MalI	GATC	9 cut(s)	117, 273, 316, 516, 558, 639, 918, 939, 2305
MboI	GATC	9 cut(s)	115, 271, 314, 514, 556, 637, 916, 937, 2303
MfeI	CAATTG	4 cut(s)	245, 510, 1781, 2176
MflI	RGATCY	2 cut(s)	556, 916
MhlI	GDGCHC	2 cut(s)	672, 2209
MlsI	TGGCCA	1 cut(s)	859
MluNI	TGGCCA	1 cut(s)	859
MlyI	GAGTC	3 cut(s)	25, 43, 2033
MmeI	TCCRAC	2 cut(s)	349, 1978
Mox20I	TGGCCA	1 cut(s)	859
Mph1103I	ATGCAT	1 cut(s)	1449
MroXI	GAANNNNTTC	1 cut(s)	201
MscI	TGGCCA	1 cut(s)	859
MseI	TTAA	4 cut(s)	648, 1599, 2147, 2294
MslI	CAYNNNNRTG	2 cut(s)	688, 1442
Msp20I	TGGCCA	1 cut(s)	859
MspCI	CTTAAG	1 cut(s)	647
MspI	CCGG	2 cut(s)	99, 1465
MspR9I	CCNGG	2 cut(s)	100, 342
MunI	CAATTG	4 cut(s)	245, 510, 1781, 2176
Mva1269I	GAATGC	2 cut(s)	1254, 2137
MvaI	CCWGG	1 cut(s)	342
MvnI	CGCG	3 cut(s)	717, 1380, 1513
MwoI	GCNNNNNNNGC	8 cut(s)	261, 714, 1089, 1163, 1213, 1303, 1310, 1874
NciI	CCSGG	1 cut(s)	100
NcoI	CCATGG	3 cut(s)	334, 1042, 1803
NdeI	CATATG	3 cut(s)	379, 951, 2263
NdeII	GATC	9 cut(s)	115, 271, 314, 514, 556, 637, 916, 937, 2303
NlaIV	GGNNCC	5 cut(s)	332, 918, 1801, 1809, 2171
NmeAIII	GCCGAG	2 cut(s)	87, 1183
NsbI	TGCGCA	1 cut(s)	1305
NsiI	ATGCAT	1 cut(s)	1449
NspI	RCATGY	4 cut(s)	29, 1447, 1451, 1971
NspV	TTCGAA	1 cut(s)	610
OliI	CACNNNNGTG	1 cut(s)	688
PaeR7I	CTCGAG	1 cut(s)	137
PagI	TCATGA	1 cut(s)	483
PaqCI	CACCTGC	1 cut(s)	1132
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PctI	GAATGC	2 cut(s)	1254, 2137
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	7 cut(s)	155, 385, 575, 1199, 1670, 1859, 1955
PkrI	GCNGC	7 cut(s)	7, 60, 187, 212, 1159, 1473, 1839
PleI	GAGTC	3 cut(s)	24, 43, 2033
PpsI	GAGTC	3 cut(s)	24, 43, 2033
Ppu21I	YACGTR	1 cut(s)	1019
PshBI	ATTAAT	1 cut(s)	1599
Psp6I	CCWGG	1 cut(s)	340
PspEI	GGTNACC	1 cut(s)	903
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	5 cut(s)	332, 918, 1801, 1809, 2171
PspPI	GGNCC	7 cut(s)	101, 331, 338, 371, 1568, 1894, 2246
PsrI	GAACNNNNNNTAC	4 cut(s)	888, 920, 977, 1009
PstI	CTGCAG	1 cut(s)	1143
PsuI	RGATCY	2 cut(s)	556, 916
RsaI	GTAC	6 cut(s)	842, 870, 1012, 1801, 1809, 1929
RsaNI	GTAC	6 cut(s)	841, 869, 1011, 1800, 1808, 1928
RseI	CAYNNNNRTG	2 cut(s)	688, 1442
SaqAI	TTAA	4 cut(s)	648, 1599, 2147, 2294
SatI	GCNGC	7 cut(s)	6, 59, 186, 211, 1158, 1472, 1838
Sau3AI	GATC	9 cut(s)	115, 271, 314, 514, 556, 637, 916, 937, 2303
Sau96I	GGNCC	7 cut(s)	101, 331, 338, 371, 1568, 1894, 2246
ScaI	AGTACT	1 cut(s)	1012
SchI	GAGTC	3 cut(s)	25, 43, 2033
ScrFI	CCNGG	2 cut(s)	100, 342
SduI	GDGCHC	2 cut(s)	672, 2209
SfaNI	GCATC	5 cut(s)	84, 277, 457, 1153, 1298
SfcI	CTRYAG	1 cut(s)	1139
Sfr274I	CTCGAG	1 cut(s)	137
SfuI	TTCGAA	1 cut(s)	610
SinI	GGWCC	3 cut(s)	331, 371, 1894
SlaI	CTCGAG	1 cut(s)	137
SmiMI	CAYNNNNRTG	2 cut(s)	688, 1442
SmlI	CTYRAG	2 cut(s)	137, 647
SmoI	CTYRAG	2 cut(s)	137, 647
SsiI	CCGC	7 cut(s)	5, 59, 676, 717, 1380, 1513, 1837
SspMI	CTAG	5 cut(s)	810, 990, 1634, 1722, 2289
StyD4I	CCNGG	2 cut(s)	98, 340
StyI	CCWWGG	4 cut(s)	334, 1042, 1803, 1959
TaaI	ACNGT	6 cut(s)	607, 1387, 1509, 1894, 2211, 2254
TaiI	ACGT	1 cut(s)	1021
TaqI	TCGA	6 cut(s)	132, 138, 388, 610, 1119, 1389
TatI	WGTACW	3 cut(s)	840, 868, 1010
TauI	GCSGC	3 cut(s)	8, 61, 1840
TfiI	GAWTC	7 cut(s)	155, 385, 575, 1199, 1670, 1859, 1955
Tru1I	TTAA	4 cut(s)	648, 1599, 2147, 2294
Tru9I	TTAA	4 cut(s)	648, 1599, 2147, 2294
TscAI	CASTG	4 cut(s)	854, 1091, 1262, 2236
TseI	GCWGC	4 cut(s)	185, 210, 1157, 1471
TspDTI	ATGAA	9 cut(s)	500, 588, 909, 935, 998, 1557, 1569, 1872, 2187
TspGWI	ACGGA	3 cut(s)	284, 1678, 1923
TspRI	CASTG	4 cut(s)	854, 1091, 1262, 2236
Vha464I	CTTAAG	1 cut(s)	647
VpaK11BI	GGWCC	3 cut(s)	331, 371, 1894
VspI	ATTAAT	1 cut(s)	1599
XapI	RAATTY	3 cut(s)	488, 642, 1883
XceI	RCATGY	4 cut(s)	29, 1447, 1451, 1971
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1810
XhoI	CTCGAG	1 cut(s)	137
XmiI	GTMKAC	2 cut(s)	1280, 1753
XmnI	GAANNNNTTC	1 cut(s)	201
XspI	CTAG	5 cut(s)	810, 990, 1634, 1722, 2289
ZrmI	AGTACT	1 cut(s)	1012
Zsp2I	ATGCAT	1 cut(s)	1449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.