Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017785.1

Orthogroup ID

OG0000312

Physical Location & Seq

Genomic Coordinates Forward (+)

28531 .. 32630

Gene Structure 4100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017785.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2208 bp

atggcggcctctgagagtcggaaacatgcttcgtcttcttcgtctgagactccacagccgccgaggagttacggcatcacgaagccgatttttctctccgggccgtcgcagtctgatcgtcaacgaaatatcgaactcgagaagttcttggttgattcggggctgtatgagagcaaagacgaggctgcgaaaagagaagaggttcttggctgcattggtcaggtccatgggcctggagctgatatagatactttgtgtgttggaccatcatatgtgaatcgagaggaggatttttttattattttgcatgacatcctgtgtgaaatggaagaggtaactgaacttcaacgagttcctgatgctcatgtcccagtcatgaaattcaagtttcagggaatatcaattgatcttctgtatgcaagcatatctctcttggttgtcccagaggatctggacatctcagatgaatctgtgctatgcaatgttgacgagcaaactgttcgaagtctgaatggttgcagggttgcagatcaaattcttaagcttgttccaaatgttgagcacttccgcacaacactcaggtgtttgaagttttggggcaaaaggcgcggtgtatattctaatgttactggatttcttggtggtgtaaattgggctattttagttgctcggatatgtcagctttatcccaatgcaaatcctagtatgttggtttctcggtttttcagagtgtacactcagtggcgttggccaaatcctgtacttctttgttcaatagaagagaatgaacttgggttacctacatgggatcctcgtaaaaaccctcaggatcgctttcatcatatgccgataataactcctgcatacccttgtatgaactctagttacaatgtctcagtaagtactctacgtgttatgacagagcagttccaccatggtaataggatatgtgaggagattgagctgaagaaaagccagtggagcgctctgtttgaaccttatcttttcttcgaggcatacaaaaactatctgcaggtggacatagtagcagccgatgctgatgatttgttggcatggaaggggtgggtggaatctcggcttagacagctcaccttgaagatagagcgagacacaagtggaatgcttcagtgccatccatatccaaaggagtatacagacgcatccaagccttgtgcgcattgtgctttctttatgggtttgcagaggaaagaaggagtaagaggtcaagaaggtcagcaatttgatatacgcggaacagtcgatgagttcaggcttgatgtaaacaggtatggattttggaaaccttgcatggacatgcatgtttgtcatgttcgccggaagcagcttcctccctttgtcttccccgatgggtataaacggtcgcggttatcaagacatataagccagcaagatgaaggaacttatgaagaaccctctgggcctattgaaagacatatcaggaggaaaattaatcctaaaacagaggacacgaggccaagtgaactagagaagcagacctctattagcccactacggatggaatctgtatccccagaaagtattgcaagtatatctggtggaacacctaatcctagcttcagtaatggtggtagattagagtgtctaccaactggaggcaattctgggggacaattggagagtgtaaagggtaccatggtacctgtggggttagttgaaaatgttgtgcggcaatccatcgctgaaaatgaatcaacagctatgtgtgcttctgaattccctacggtccagaagccttcagaagagggtaaggagttggtacatccgtctgcaatatctttctcggaatccaaggaaacatgccagattgaaataaatggggacagagttggaaatgtggttttggtggacgggaagaatatggagactgactctactggtagtgtgctgaattggacagaaggtgctattgatgttgaccaagaattagtcaaaccatgcagtcagactatgggggtggagaatgctgaaggtgtattaaaatcaacttccagcaatcggaacctcaattgcgaggatgatttactttcatcaggagcacagttccttcggaaaagtggcactggaaatctgcacggcccaactgtaatcgcatatgctgtcaatttggaagctggagctaggttaagtctgagatcaatggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004652 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

NTP_transf_2 PAP_RNA-bind PAP_central

Protein Analysis

735

Amino Acids

82.31

Weight (kDa)

5.51

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850
fragaria_vesca	FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471
malus_domestica	MD08G1110400.v1.1 MD09G1202000.v1.1 MD09G1202100.v1.1 MD17G1182800.v1.1
prunus_persica	Prupe.1G444600_v2.0.a1 Prupe.3G057600_v2.0.a1 Prupe.3G057600_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1
pyrus_communis	pycom08g09190 pycom09g11890 pycom15g08420 pycom17g19200
rosa_chinensis	RchiOBHm_Chr2g0140721 RchiOBHm_Chr2g0140741 RchiOBHm_Chr2g0140761 RchiOBHm_Chr6g0306691
rosa_laevigata	RLG00000010773 RLG00000019895 RLG00000019896
rosa_multiflora	Rmu_co8193342.1_g000001 Rmu_sc0003342.1_g000015 Rmu_sc0003342.1_g000021 Rmu_sc0003342.1_g000026 Rmu_sc0005201.1_g000002 Rmu_sc0017785.1_g000009
rosa_roxburghii	Rroxscaffold_2G00104510 Rroxscaffold_2G00104540 Rroxscaffold_7G00161540
rosa_rugosa	Rorug02G0364600 Rorug02G0364700 Rorug02G0364800 Rorug02G0364900 Rorug02G0365000 Rorug06G0351600 Rorug06G0351700
rosa_samantha	Rh2AG416100 Rh2AG416200 Rh2AG416300 Rh2BG425700 Rh2BG425800 Rh2BG425900 Rh2CG402300 Rh2CG402400 Rh2CG402500 Rh2DG435600 Rh2DG435700 Rh2DG435800 Rh6AG464000 Rh6BG437000 Rh6CG478100 Rh6DG464900
rosa_wichuraiana	Rw2G034050 Rw2G034060 Rw6G040420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1024
Acc16I	TGCGCA	1 cut(s)	1197
Acc36I	ACCTGC	1 cut(s)	1024
Acc65I	GGTACC	2 cut(s)	1691, 1699
AccB1I	GGYRCC	2 cut(s)	1691, 1699
AccI	GTMKAC	2 cut(s)	1172, 1645
AccII	CGCG	3 cut(s)	609, 1272, 1405
AciI	CCGC	7 cut(s)	5, 59, 568, 609, 1272, 1405, 1729
AclWI	GGATC	4 cut(s)	456, 803, 816, 837
AcoI	YGGCCR	1 cut(s)	749
AcsI	RAATTY	3 cut(s)	380, 534, 1775
AcuI	CTGAAG	5 cut(s)	986, 1130, 1603, 1782, 2049
AdeI	CACNNNGTG	1 cut(s)	741
AfaI	GTAC	6 cut(s)	734, 762, 904, 1693, 1701, 1821
AfeI	AGCGCT	1 cut(s)	985
AfiI	CCNNNNNNNGG	2 cut(s)	1655, 2058
AflII	CTTAAG	1 cut(s)	539
AflIII	ACRYGT	1 cut(s)	910
AgsI	TTSAA	9 cut(s)	347, 385, 589, 774, 995, 1117, 1469, 1718, 1871
AjnI	CCWGG	1 cut(s)	232
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
AleI	CACNNNNGTG	1 cut(s)	580
AloI	GAACNNNNNNTCC	2 cut(s)	1594, 1626
Alw21I	GWGCWC	2 cut(s)	564, 2101
Alw26I	GTCTC	4 cut(s)	41, 898, 1122, 1919
AlwI	GGATC	4 cut(s)	456, 803, 816, 837
Ama87I	CYCGRG	1 cut(s)	137
Aor51HI	AGCGCT	1 cut(s)	985
AoxI	GGCC	7 cut(s)	6, 101, 230, 749, 1460, 1514, 2137
ApeKI	GCWGC	4 cut(s)	185, 210, 1049, 1363
ApoI	RAATTY	3 cut(s)	380, 534, 1775
AseI	ATTAAT	1 cut(s)	1491
Asp700I	GAANNNNTTC	1 cut(s)	201
Asp718I	GGTACC	2 cut(s)	1691, 1699
AspLEI	GCGC	3 cut(s)	609, 986, 1198
AspS9I	GGNCC	7 cut(s)	101, 223, 230, 263, 1460, 1786, 2138
AsuC2I	CCSGG	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	1102
AsuII	TTCGAA	1 cut(s)	502
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	3 cut(s)	223, 263, 1786
AxyI	CCTNAGG	1 cut(s)	825
BaeI	ACNNNNGTAYC	6 cut(s)	1683, 1683, 1716, 1716, 1811, 1844
BalI	TGGCCA	1 cut(s)	751
BamHI	GGATCC	1 cut(s)	808
BanI	GGYRCC	2 cut(s)	1691, 1699
BarI	GAAGNNNNNNTAC	2 cut(s)	327, 359
BauI	CACGAG	1 cut(s)	1510
BbsI	GAAGAC	2 cut(s)	27, 1372
Bbv12I	GWGCWC	2 cut(s)	564, 2101
BbvI	GCAGC	4 cut(s)	172, 197, 1061, 1375
BccI	CCATC	5 cut(s)	274, 1161, 1382, 1552, 1745
BceAI	ACGGC	3 cut(s)	88, 88, 2152
BcgI	CGANNNNNNTGC	4 cut(s)	98, 132, 482, 516
BciT130I	CCWGG	1 cut(s)	234
BciVI	GTATCC	1 cut(s)	1579
BcnI	CCSGG	1 cut(s)	100
BcoDI	GTCTC	4 cut(s)	41, 898, 1122, 1919
BfaI	CTAG	5 cut(s)	702, 882, 1526, 1614, 2181
BfmI	CTRYAG	1 cut(s)	1031
BfoI	RGCGCY	1 cut(s)	987
BfrI	CTTAAG	1 cut(s)	539
BfuAI	ACCTGC	1 cut(s)	1024
BfuI	GTATCC	1 cut(s)	1579
BisI	GCNGC	7 cut(s)	6, 59, 186, 211, 1050, 1364, 1730
BlsI	GCNGC	7 cut(s)	7, 60, 187, 212, 1051, 1365, 1731
BmcAI	AGTACT	1 cut(s)	904
Bme1390I	CCNGG	2 cut(s)	100, 234
Bme18I	GGWCC	3 cut(s)	223, 263, 1786
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	7 cut(s)	101, 223, 230, 263, 1460, 1786, 2138
BmiI	GGNNCC	4 cut(s)	810, 1693, 1701, 2063
BmrFI	CCNGG	2 cut(s)	100, 234
BmrI	ACTGGG	1 cut(s)	365
BmsI	GCATC	4 cut(s)	84, 349, 1045, 1190
BmuI	ACTGGG	1 cut(s)	365
BpiI	GAAGAC	2 cut(s)	27, 1372
BplI	GAGNNNNNCTC	2 cut(s)	1916, 1948
BpmI	CTGGAG	3 cut(s)	255, 1674, 2196
Bpu14I	TTCGAA	1 cut(s)	502
BpuMI	CCSGG	1 cut(s)	100
BsaAI	YACGTR	1 cut(s)	911
BsaJI	CCNNGG	5 cut(s)	62, 226, 934, 1695, 1851
Bsc4I	CCNNNNNNNGG	2 cut(s)	1655, 2058
Bse1I	ACTGG	6 cut(s)	371, 634, 976, 1657, 1942, 2128
Bse21I	CCTNAGG	1 cut(s)	825
Bse3DI	GCAATG	1 cut(s)	487
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	5 cut(s)	62, 226, 934, 1695, 1851
BseGI	GGATG	6 cut(s)	312, 1153, 1181, 1563, 1822, 2083
BseLI	CCNNNNNNNGG	2 cut(s)	1655, 2058
BseMI	GCAATG	1 cut(s)	487
BseMII	CTCAG	7 cut(s)	36, 474, 592, 752, 839, 909, 2183
BseNI	ACTGG	6 cut(s)	371, 634, 976, 1657, 1942, 2128
BseRI	GAGGAG	3 cut(s)	79, 299, 968
BseXI	GCAGC	4 cut(s)	172, 197, 1061, 1375
BsgI	GTGCAG	1 cut(s)	2117
Bsh1236I	CGCG	3 cut(s)	609, 1272, 1405
Bsh1285I	CGRYCG	1 cut(s)	1403
BshFI	GGCC	7 cut(s)	8, 103, 232, 751, 1462, 1516, 2139
BshNI	GGYRCC	2 cut(s)	1691, 1699
BsiEI	CGRYCG	1 cut(s)	1403
BsiHKAI	GWGCWC	2 cut(s)	564, 2101
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	2 cut(s)	99, 1357
BslFI	GGGAC	4 cut(s)	353, 425, 1683, 1895
BslI	CCNNNNNNNGG	2 cut(s)	1655, 2058
BsmAI	GTCTC	4 cut(s)	41, 898, 1122, 1919
BsmFI	GGGAC	4 cut(s)	353, 425, 1683, 1895
BsmI	GAATGC	2 cut(s)	1146, 2029
BsnI	GGCC	7 cut(s)	8, 103, 232, 751, 1462, 1516, 2139
BsoBI	CYCGRG	1 cut(s)	137
Bsp119I	TTCGAA	1 cut(s)	502
Bsp1286I	GDGCHC	2 cut(s)	564, 2101
Bsp1407I	TGTACA	1 cut(s)	732
Bsp143I	GATC	7 cut(s)	115, 406, 448, 529, 808, 829, 2195
Bsp19I	CCATGG	3 cut(s)	226, 934, 1695
BspACI	CCGC	7 cut(s)	5, 59, 568, 609, 1272, 1405, 1729
BspANI	GGCC	7 cut(s)	8, 103, 232, 751, 1462, 1516, 2139
BspCNI	CTCAG	8 cut(s)	4, 37, 473, 591, 751, 838, 908, 2184
BspFNI	CGCG	3 cut(s)	609, 1272, 1405
BspHI	TCATGA	1 cut(s)	375
BspLI	GGNNCC	4 cut(s)	810, 1693, 1701, 2063
BspMAI	CTGCAG	1 cut(s)	1035
BspMI	ACCTGC	1 cut(s)	1024
BspPI	GGATC	4 cut(s)	456, 803, 816, 837
BspT104I	TTCGAA	1 cut(s)	502
BspT107I	GGYRCC	2 cut(s)	1691, 1699
BspTI	CTTAAG	1 cut(s)	539
BsrDI	GCAATG	1 cut(s)	487
BsrGI	TGTACA	1 cut(s)	732
BsrI	ACTGG	6 cut(s)	371, 634, 976, 1657, 1942, 2128
BssECI	CCNNGG	5 cut(s)	62, 226, 934, 1695, 1851
BssMI	GATC	7 cut(s)	115, 406, 448, 529, 808, 829, 2195
BssNAI	GTATAC	1 cut(s)	1173
BssSI	CACGAG	1 cut(s)	1510
BssT1I	CCWWGG	4 cut(s)	226, 934, 1695, 1851
Bst1107I	GTATAC	1 cut(s)	1173
Bst2BI	CACGAG	1 cut(s)	1510
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	6 cut(s)	499, 1279, 1401, 1786, 2103, 2146
Bst6I	CTCTTC	4 cut(s)	192, 324, 774, 1797
BstAFI	CTTAAG	1 cut(s)	539
BstAPI	GCANNNNNTGC	1 cut(s)	1055
BstAUI	TGTACA	1 cut(s)	732
BstBAI	YACGTR	1 cut(s)	911
BstBI	TTCGAA	1 cut(s)	502
BstC8I	GCNNGC	2 cut(s)	421, 1427
BstDEI	CTNAG	9 cut(s)	12, 45, 460, 578, 738, 825, 895, 1100, 2192
BstDSI	CCRYGG	3 cut(s)	226, 934, 1695
BstEII	GGTNACC	1 cut(s)	795
BstF5I	GGATG	6 cut(s)	312, 1153, 1181, 1563, 1822, 2083
BstFNI	CGCG	3 cut(s)	609, 1272, 1405
BstH2I	RGCGCY	1 cut(s)	987
BstHHI	GCGC	3 cut(s)	609, 986, 1198
BstKTI	GATC	7 cut(s)	118, 409, 451, 532, 811, 832, 2198
BstMAI	GTCTC	4 cut(s)	41, 898, 1122, 1919
BstMBI	GATC	7 cut(s)	115, 406, 448, 529, 808, 829, 2195
BstMCI	CGRYCG	1 cut(s)	1403
BstMWI	GCNNNNNNNGC	7 cut(s)	606, 981, 1055, 1105, 1195, 1202, 1766
BstNI	CCWGG	1 cut(s)	234
BstNSI	RCATGY	4 cut(s)	29, 1339, 1343, 1863
BstPI	GGTNACC	1 cut(s)	795
BstSCI	CCNGG	2 cut(s)	98, 232
BstSFI	CTRYAG	1 cut(s)	1031
BstUI	CGCG	3 cut(s)	609, 1272, 1405
BstV1I	GCAGC	4 cut(s)	172, 197, 1061, 1375
BstV2I	GAAGAC	2 cut(s)	27, 1372
BstX2I	RGATCY	2 cut(s)	448, 808
BstXI	CCANNNNNNTGG	1 cut(s)	233
BstYI	RGATCY	2 cut(s)	448, 808
BstZ17I	GTATAC	1 cut(s)	1173
Bsu36I	CCTNAGG	1 cut(s)	825
BsuI	GTATCC	1 cut(s)	1579
BsuRI	GGCC	7 cut(s)	8, 103, 232, 751, 1462, 1516, 2139
BtgI	CCRYGG	3 cut(s)	226, 934, 1695
BtgZI	GCGATG	1 cut(s)	1723
BtsCI	GGATG	6 cut(s)	312, 1153, 1181, 1563, 1822, 2083
BtsIMutI	CAGTG	4 cut(s)	746, 983, 1154, 2121
BveI	ACCTGC	1 cut(s)	1024
Cac8I	GCNNGC	2 cut(s)	421, 1427
CciI	TCATGA	1 cut(s)	375
CfoI	GCGC	3 cut(s)	609, 986, 1198
Cfr13I	GGNCC	7 cut(s)	101, 223, 230, 263, 1460, 1786, 2138
CseI	GACGC	1 cut(s)	1187
Csp6I	GTAC	6 cut(s)	733, 761, 903, 1692, 1700, 1820
CviQI	GTAC	6 cut(s)	733, 761, 903, 1692, 1700, 1820
DdeI	CTNAG	9 cut(s)	12, 45, 460, 578, 738, 825, 895, 1100, 2192
DpnI	GATC	7 cut(s)	117, 408, 450, 531, 810, 831, 2197
DpnII	GATC	7 cut(s)	115, 406, 448, 529, 808, 829, 2195
DraIII	CACNNNGTG	1 cut(s)	741
EaeI	YGGCCR	1 cut(s)	749
Eam1104I	CTCTTC	4 cut(s)	192, 324, 774, 1797
EarI	CTCTTC	4 cut(s)	192, 324, 774, 1797
Eco130I	CCWWGG	4 cut(s)	226, 934, 1695, 1851
Eco47I	GGWCC	3 cut(s)	223, 263, 1786
Eco47III	AGCGCT	1 cut(s)	985
Eco57I	CTGAAG	5 cut(s)	986, 1130, 1603, 1782, 2049
Eco81I	CCTNAGG	1 cut(s)	825
Eco88I	CYCGRG	1 cut(s)	137
Eco91I	GGTNACC	1 cut(s)	795
EcoO65I	GGTNACC	1 cut(s)	795
EcoRI	GAATTC	1 cut(s)	1775
EcoRII	CCWGG	1 cut(s)	232
EcoT14I	CCWWGG	4 cut(s)	226, 934, 1695, 1851
EcoT22I	ATGCAT	1 cut(s)	1341
ErhI	CCWWGG	4 cut(s)	226, 934, 1695, 1851
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FaqI	GGGAC	4 cut(s)	353, 425, 1683, 1895
FauNDI	CATATG	3 cut(s)	271, 843, 2155
FblI	GTMKAC	2 cut(s)	1172, 1645
Fnu4HI	GCNGC	7 cut(s)	6, 59, 186, 211, 1050, 1364, 1730
FokI	GGATG	6 cut(s)	299, 1140, 1168, 1570, 1809, 2090
Fsp4HI	GCNGC	7 cut(s)	6, 59, 186, 211, 1050, 1364, 1730
FspAI	RTGCGCAY	1 cut(s)	1197
FspBI	CTAG	5 cut(s)	702, 882, 1526, 1614, 2181
FspI	TGCGCA	1 cut(s)	1197
GlaI	GCGC	3 cut(s)	608, 985, 1197
GluI	GCNGC	7 cut(s)	6, 59, 186, 211, 1050, 1364, 1730
GsuI	CTGGAG	3 cut(s)	255, 1674, 2196
HaeII	RGCGCY	1 cut(s)	987
HaeIII	GGCC	7 cut(s)	8, 103, 232, 751, 1462, 1516, 2139
HapII	CCGG	2 cut(s)	99, 1357
HgaI	GACGC	1 cut(s)	1187
HhaI	GCGC	3 cut(s)	609, 986, 1198
Hin6I	GCGC	3 cut(s)	607, 984, 1196
HinP1I	GCGC	3 cut(s)	607, 984, 1196
HincII	GTYRAC	3 cut(s)	122, 487, 1978
HindII	GTYRAC	3 cut(s)	122, 487, 1978
HindIII	AAGCTT	1 cut(s)	542
HpaII	CCGG	2 cut(s)	99, 1357
HphI	GGTGA	1 cut(s)	1102
Hpy99I	CGWCG	1 cut(s)	109
HpyAV	CCTTC	8 cut(s)	1072, 1226, 1244, 1430, 1806, 1955, 2024, 2117
HpyCH4III	ACNGT	6 cut(s)	499, 1279, 1401, 1786, 2103, 2146
HpyCH4IV	ACGT	1 cut(s)	910
HpyF10VI	GCNNNNNNNGC	7 cut(s)	606, 981, 1055, 1105, 1195, 1202, 1766
HpyF3I	CTNAG	9 cut(s)	12, 45, 460, 578, 738, 825, 895, 1100, 2192
HpySE526I	ACGT	1 cut(s)	910
HspAI	GCGC	3 cut(s)	607, 984, 1196
KpnI	GGTACC	2 cut(s)	1695, 1703
Kzo9I	GATC	7 cut(s)	115, 406, 448, 529, 808, 829, 2195
LmnI	GCTCC	4 cut(s)	236, 981, 2096, 2177
Lsp1109I	GCAGC	4 cut(s)	172, 197, 1061, 1375
LweI	GCATC	4 cut(s)	84, 349, 1045, 1190
MaeI	CTAG	5 cut(s)	702, 882, 1526, 1614, 2181
MaeII	ACGT	1 cut(s)	910
MaeIII	GTNAC	5 cut(s)	68, 334, 625, 795, 884
MalI	GATC	7 cut(s)	117, 408, 450, 531, 810, 831, 2197
MboI	GATC	7 cut(s)	115, 406, 448, 529, 808, 829, 2195
MfeI	CAATTG	3 cut(s)	402, 1673, 2068
MflI	RGATCY	2 cut(s)	448, 808
MhlI	GDGCHC	2 cut(s)	564, 2101
MlsI	TGGCCA	1 cut(s)	751
MluNI	TGGCCA	1 cut(s)	751
MlyI	GAGTC	3 cut(s)	25, 43, 1925
MmeI	TCCRAC	2 cut(s)	241, 1870
Mox20I	TGGCCA	1 cut(s)	751
Mph1103I	ATGCAT	1 cut(s)	1341
MroXI	GAANNNNTTC	1 cut(s)	201
MscI	TGGCCA	1 cut(s)	751
MseI	TTAA	4 cut(s)	540, 1491, 2039, 2186
MslI	CAYNNNNRTG	2 cut(s)	580, 1334
Msp20I	TGGCCA	1 cut(s)	751
MspCI	CTTAAG	1 cut(s)	539
MspI	CCGG	2 cut(s)	99, 1357
MspR9I	CCNGG	2 cut(s)	100, 234
MunI	CAATTG	3 cut(s)	402, 1673, 2068
Mva1269I	GAATGC	2 cut(s)	1146, 2029
MvaI	CCWGG	1 cut(s)	234
MvnI	CGCG	3 cut(s)	609, 1272, 1405
MwoI	GCNNNNNNNGC	7 cut(s)	606, 981, 1055, 1105, 1195, 1202, 1766
NciI	CCSGG	1 cut(s)	100
NcoI	CCATGG	3 cut(s)	226, 934, 1695
NdeI	CATATG	3 cut(s)	271, 843, 2155
NdeII	GATC	7 cut(s)	115, 406, 448, 529, 808, 829, 2195
NlaIV	GGNNCC	4 cut(s)	810, 1693, 1701, 2063
NmeAIII	GCCGAG	2 cut(s)	87, 1075
NsbI	TGCGCA	1 cut(s)	1197
NsiI	ATGCAT	1 cut(s)	1341
NspI	RCATGY	4 cut(s)	29, 1339, 1343, 1863
NspV	TTCGAA	1 cut(s)	502
OliI	CACNNNNGTG	1 cut(s)	580
PaeR7I	CTCGAG	1 cut(s)	137
PagI	TCATGA	1 cut(s)	375
PaqCI	CACCTGC	1 cut(s)	1024
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PctI	GAATGC	2 cut(s)	1146, 2029
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	7 cut(s)	155, 277, 467, 1091, 1562, 1751, 1847
PkrI	GCNGC	7 cut(s)	7, 60, 187, 212, 1051, 1365, 1731
PleI	GAGTC	3 cut(s)	24, 43, 1925
PpsI	GAGTC	3 cut(s)	24, 43, 1925
Ppu21I	YACGTR	1 cut(s)	911
PshBI	ATTAAT	1 cut(s)	1491
Psp6I	CCWGG	1 cut(s)	232
PspEI	GGTNACC	1 cut(s)	795
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	4 cut(s)	810, 1693, 1701, 2063
PspPI	GGNCC	7 cut(s)	101, 223, 230, 263, 1460, 1786, 2138
PsrI	GAACNNNNNNTAC	4 cut(s)	780, 812, 869, 901
PstI	CTGCAG	1 cut(s)	1035
PsuI	RGATCY	2 cut(s)	448, 808
RsaI	GTAC	6 cut(s)	734, 762, 904, 1693, 1701, 1821
RsaNI	GTAC	6 cut(s)	733, 761, 903, 1692, 1700, 1820
RseI	CAYNNNNRTG	2 cut(s)	580, 1334
SaqAI	TTAA	4 cut(s)	540, 1491, 2039, 2186
SatI	GCNGC	7 cut(s)	6, 59, 186, 211, 1050, 1364, 1730
Sau3AI	GATC	7 cut(s)	115, 406, 448, 529, 808, 829, 2195
Sau96I	GGNCC	7 cut(s)	101, 223, 230, 263, 1460, 1786, 2138
ScaI	AGTACT	1 cut(s)	904
SchI	GAGTC	3 cut(s)	25, 43, 1925
ScrFI	CCNGG	2 cut(s)	100, 234
SduI	GDGCHC	2 cut(s)	564, 2101
SfaNI	GCATC	4 cut(s)	84, 349, 1045, 1190
SfcI	CTRYAG	1 cut(s)	1031
Sfr274I	CTCGAG	1 cut(s)	137
SfuI	TTCGAA	1 cut(s)	502
SinI	GGWCC	3 cut(s)	223, 263, 1786
SlaI	CTCGAG	1 cut(s)	137
SmiMI	CAYNNNNRTG	2 cut(s)	580, 1334
SmlI	CTYRAG	2 cut(s)	137, 539
SmoI	CTYRAG	2 cut(s)	137, 539
SsiI	CCGC	7 cut(s)	5, 59, 568, 609, 1272, 1405, 1729
SspMI	CTAG	5 cut(s)	702, 882, 1526, 1614, 2181
StyD4I	CCNGG	2 cut(s)	98, 232
StyI	CCWWGG	4 cut(s)	226, 934, 1695, 1851
TaaI	ACNGT	6 cut(s)	499, 1279, 1401, 1786, 2103, 2146
TaiI	ACGT	1 cut(s)	913
TaqI	TCGA	6 cut(s)	132, 138, 280, 502, 1011, 1281
TatI	WGTACW	3 cut(s)	732, 760, 902
TauI	GCSGC	3 cut(s)	8, 61, 1732
TfiI	GAWTC	7 cut(s)	155, 277, 467, 1091, 1562, 1751, 1847
Tru1I	TTAA	4 cut(s)	540, 1491, 2039, 2186
Tru9I	TTAA	4 cut(s)	540, 1491, 2039, 2186
TscAI	CASTG	4 cut(s)	746, 983, 1154, 2128
TseI	GCWGC	4 cut(s)	185, 210, 1049, 1363
TspDTI	ATGAA	9 cut(s)	392, 480, 801, 827, 890, 1449, 1461, 1764, 2079
TspGWI	ACGGA	2 cut(s)	1570, 1815
TspRI	CASTG	4 cut(s)	746, 983, 1154, 2128
Vha464I	CTTAAG	1 cut(s)	539
VpaK11BI	GGWCC	3 cut(s)	223, 263, 1786
VspI	ATTAAT	1 cut(s)	1491
XapI	RAATTY	3 cut(s)	380, 534, 1775
XceI	RCATGY	4 cut(s)	29, 1339, 1343, 1863
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1702
XhoI	CTCGAG	1 cut(s)	137
XmiI	GTMKAC	2 cut(s)	1172, 1645
XmnI	GAANNNNTTC	1 cut(s)	201
XspI	CTAG	5 cut(s)	702, 882, 1526, 1614, 2181
ZrmI	AGTACT	1 cut(s)	904
Zsp2I	ATGCAT	1 cut(s)	1341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.