Poly(A) polymerase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PAP_NTPase | PF20750 | 22 - 216 | 1.8e-73 | Poly(A) polymerase nucleotidyltransferase domain |
| NTP_transf_2 | PF01909 | 82 - 171 | 2.5e-09 | Nucleotidyltransferase domain |
| PAP_central | PF04928 | 221 - 365 | 9.7e-68 | Poly(A) polymerase central domain |
| PAP_RNA-bind | PF04926 | 369 - 427 | 1.4e-10 | Poly(A) polymerase predicted RNA binding domain |
| PAP_RNA-bind | PF04926 | 428 - 502 | 1.3e-06 | Poly(A) polymerase predicted RNA binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 953, 1494 |
| AccB1I | GGYRCC | 2 cut(s) | 1251, 1461 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 46 |
| AccBSI | CCGCTC | 1 cut(s) | 1225 |
| AccI | GTMKAC | 2 cut(s) | 831, 1137 |
| AciI | CCGC | 4 cut(s) | 32, 44, 913, 1225 |
| AclWI | GGATC | 2 cut(s) | 902, 915 |
| AcoI | YGGCCR | 1 cut(s) | 848 |
| AcsI | RAATTY | 4 cut(s) | 633, 1433, 1732, 1781 |
| AcuI | CTGAAG | 3 cut(s) | 105, 582, 1595 |
| AcyI | GRCGYC | 1 cut(s) | 1462 |
| AdeI | CACNNNGTG | 3 cut(s) | 354, 840, 1301 |
| AfaI | GTAC | 6 cut(s) | 324, 540, 578, 670, 1003, 1409 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 46, 930 |
| AflII | CTTAAG | 1 cut(s) | 638 |
| AflIII | ACRYGT | 1 cut(s) | 1476 |
| AgsI | TTSAA | 5 cut(s) | 146, 878, 1112, 1387, 1694 |
| AhlI | ACTAGT | 1 cut(s) | 1766 |
| AjiI | CACGTC | 1 cut(s) | 707 |
| AjnI | CCWGG | 5 cut(s) | 331, 549, 1131, 1423, 1717 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 879, 911 |
| AluBI | AGCT | 5 cut(s) | 149, 176, 643, 984, 1116 |
| AluI | AGCT | 5 cut(s) | 149, 176, 643, 984, 1116 |
| Alw21I | GWGCWC | 2 cut(s) | 1087, 1297 |
| Alw44I | GTGCAC | 1 cut(s) | 1293 |
| AlwI | GGATC | 2 cut(s) | 902, 915 |
| Ama87I | CYCGRG | 1 cut(s) | 768 |
| AoxI | GGCC | 4 cut(s) | 92, 362, 848, 1521 |
| ApaLI | GTGCAC | 1 cut(s) | 1293 |
| ApeKI | GCWGC | 2 cut(s) | 176, 615 |
| ApoI | RAATTY | 4 cut(s) | 633, 1433, 1732, 1781 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 380, 412 |
| AspLEI | GCGC | 1 cut(s) | 1464 |
| AspS9I | GGNCC | 4 cut(s) | 92, 329, 362, 1522 |
| AsuC2I | CCSGG | 1 cut(s) | 91 |
| AsuHPI | GGTGA | 5 cut(s) | 18, 191, 241, 1346, 1574 |
| AsuII | TTCGAA | 3 cut(s) | 601, 1092, 1776 |
| AvaI | CYCGRG | 1 cut(s) | 768 |
| AvaII | GGWCC | 1 cut(s) | 329 |
| BaeGI | GKGCMC | 1 cut(s) | 1297 |
| BalI | TGGCCA | 1 cut(s) | 850 |
| BamHI | GGATCC | 1 cut(s) | 907 |
| BanI | GGYRCC | 2 cut(s) | 1251, 1461 |
| BanII | GRGCYC | 1 cut(s) | 757 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1636, 1668 |
| BbsI | GAAGAC | 1 cut(s) | 393 |
| Bbv12I | GWGCWC | 2 cut(s) | 1087, 1297 |
| BbvI | GCAGC | 2 cut(s) | 163, 602 |
| BccI | CCATC | 6 cut(s) | 373, 485, 840, 1012, 1423, 1481 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1127, 1161 |
| BciT130I | CCWGG | 5 cut(s) | 333, 551, 1133, 1425, 1719 |
| BciVI | GTATCC | 1 cut(s) | 248 |
| BclI | TGATCA | 2 cut(s) | 628, 1534 |
| BcnI | CCSGG | 1 cut(s) | 91 |
| BcuI | ACTAGT | 1 cut(s) | 1766 |
| BfaI | CTAG | 8 cut(s) | 801, 816, 981, 1074, 1503, 1512, 1758, 1767 |
| BfmI | CTRYAG | 1 cut(s) | 616 |
| BfoI | RGCGCY | 1 cut(s) | 1465 |
| BfrI | CTTAAG | 1 cut(s) | 638 |
| BfuI | GTATCC | 1 cut(s) | 248 |
| BisI | GCNGC | 2 cut(s) | 177, 616 |
| BlsI | GCNGC | 2 cut(s) | 178, 617 |
| Bme1390I | CCNGG | 6 cut(s) | 91, 333, 551, 1133, 1425, 1719 |
| Bme18I | GGWCC | 1 cut(s) | 329 |
| BmeT110I | CYCGRG | 1 cut(s) | 768 |
| BmgBI | CACGTC | 1 cut(s) | 707 |
| BmgT120I | GGNCC | 4 cut(s) | 92, 329, 362, 1522 |
| BmiI | GGNNCC | 4 cut(s) | 909, 1253, 1463, 1716 |
| BmrFI | CCNGG | 6 cut(s) | 91, 333, 551, 1133, 1425, 1719 |
| BmrI | ACTGGG | 1 cut(s) | 760 |
| BmsI | GCATC | 7 cut(s) | 268, 448, 671, 1144, 1658, 1714, 1770 |
| BmuI | ACTGGG | 1 cut(s) | 760 |
| BpiI | GAAGAC | 1 cut(s) | 393 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 511, 543 |
| BpmI | CTGGAG | 3 cut(s) | 1115, 1733, 1740 |
| Bpu14I | TTCGAA | 3 cut(s) | 601, 1092, 1776 |
| BpuEI | CTTGAG | 1 cut(s) | 706 |
| BpuMI | CCSGG | 1 cut(s) | 91 |
| Bsa29I | ATCGAT | 2 cut(s) | 585, 1354 |
| BsaAI | YACGTR | 1 cut(s) | 1477 |
| BsaBI | GATNNNNATC | 1 cut(s) | 627 |
| BsaHI | GRCGYC | 1 cut(s) | 1462 |
| BsaJI | CCNNGG | 2 cut(s) | 332, 1424 |
| BsaWI | WCCGGW | 1 cut(s) | 930 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 46, 930 |
| Bse1I | ACTGG | 5 cut(s) | 733, 755, 1068, 1716, 1737 |
| Bse8I | GATNNNNATC | 1 cut(s) | 627 |
| BseBI | CCWGG | 5 cut(s) | 333, 551, 1133, 1425, 1719 |
| BseCI | ATCGAT | 2 cut(s) | 585, 1354 |
| BseDI | CCNNGG | 2 cut(s) | 332, 1424 |
| BseGI | GGATG | 6 cut(s) | 73, 283, 343, 628, 889, 1434 |
| BseJI | GATNNNNATC | 1 cut(s) | 627 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 46, 930 |
| BseMII | CTCAG | 1 cut(s) | 257 |
| BseNI | ACTGG | 5 cut(s) | 733, 755, 1068, 1716, 1737 |
| BseRI | GAGGAG | 2 cut(s) | 203, 749 |
| BseSI | GKGCMC | 1 cut(s) | 1297 |
| BseXI | GCAGC | 2 cut(s) | 163, 602 |
| BseYI | CCCAGC | 3 cut(s) | 149, 1182, 1524 |
| BshFI | GGCC | 4 cut(s) | 94, 364, 850, 1523 |
| BshNI | GGYRCC | 2 cut(s) | 1251, 1461 |
| BshVI | ATCGAT | 2 cut(s) | 585, 1354 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1087, 1297 |
| BsiHKCI | CYCGRG | 1 cut(s) | 768 |
| BsiSI | CCGG | 3 cut(s) | 90, 931, 1607 |
| BslFI | GGGAC | 2 cut(s) | 437, 1384 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 46, 930 |
| BsmFI | GGGAC | 2 cut(s) | 437, 1384 |
| BsmI | GAATGC | 1 cut(s) | 101 |
| BsnI | GGCC | 4 cut(s) | 94, 364, 850, 1523 |
| BsoBI | CYCGRG | 1 cut(s) | 768 |
| Bsp119I | TTCGAA | 3 cut(s) | 601, 1092, 1776 |
| Bsp1286I | GDGCHC | 3 cut(s) | 757, 1087, 1297 |
| Bsp1407I | TGTACA | 3 cut(s) | 576, 668, 1407 |
| Bsp143I | GATC | 6 cut(s) | 262, 628, 907, 1162, 1534, 1588 |
| BspACI | CCGC | 4 cut(s) | 32, 44, 913, 1225 |
| BspANI | GGCC | 4 cut(s) | 94, 364, 850, 1523 |
| BspCNI | CTCAG | 1 cut(s) | 256 |
| BspDI | ATCGAT | 2 cut(s) | 585, 1354 |
| BspHI | TCATGA | 3 cut(s) | 1014, 1264, 1537 |
| BspLI | GGNNCC | 4 cut(s) | 909, 1253, 1463, 1716 |
| BspMAI | CTGCAG | 1 cut(s) | 620 |
| BspPI | GGATC | 2 cut(s) | 902, 915 |
| BspT104I | TTCGAA | 3 cut(s) | 601, 1092, 1776 |
| BspT107I | GGYRCC | 2 cut(s) | 1251, 1461 |
| BspTI | CTTAAG | 1 cut(s) | 638 |
| BsrBI | CCGCTC | 1 cut(s) | 1225 |
| BsrGI | TGTACA | 3 cut(s) | 576, 668, 1407 |
| BsrI | ACTGG | 5 cut(s) | 733, 755, 1068, 1716, 1737 |
| BssECI | CCNNGG | 2 cut(s) | 332, 1424 |
| BssMI | GATC | 6 cut(s) | 262, 628, 907, 1162, 1534, 1588 |
| BssNI | GRCGYC | 1 cut(s) | 1462 |
| Bst2UI | CCWGG | 5 cut(s) | 333, 551, 1133, 1425, 1719 |
| Bst4CI | ACNGT | 8 cut(s) | 380, 598, 840, 1290, 1375, 1509, 1562, 1804 |
| Bst6I | CTCTTC | 2 cut(s) | 873, 1571 |
| BstACI | GRCGYC | 1 cut(s) | 1462 |
| BstAFI | CTTAAG | 1 cut(s) | 638 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1154, 1301, 1646 |
| BstAUI | TGTACA | 3 cut(s) | 576, 668, 1407 |
| BstBAI | YACGTR | 1 cut(s) | 1477 |
| BstBI | TTCGAA | 3 cut(s) | 601, 1092, 1776 |
| BstC8I | GCNNGC | 2 cut(s) | 806, 1170 |
| BstDEI | CTNAG | 1 cut(s) | 243 |
| BstF5I | GGATG | 6 cut(s) | 73, 283, 343, 628, 889, 1434 |
| BstH2I | RGCGCY | 1 cut(s) | 1465 |
| BstHHI | GCGC | 1 cut(s) | 1464 |
| BstKTI | GATC | 6 cut(s) | 265, 631, 910, 1165, 1537, 1591 |
| BstMBI | GATC | 6 cut(s) | 262, 628, 907, 1162, 1534, 1588 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 91, 1030, 1154, 1301, 1646 |
| BstNI | CCWGG | 5 cut(s) | 333, 551, 1133, 1425, 1719 |
| BstNSI | RCATGY | 1 cut(s) | 808 |
| BstSCI | CCNGG | 6 cut(s) | 89, 331, 549, 1131, 1423, 1717 |
| BstSFI | CTRYAG | 1 cut(s) | 616 |
| BstSLI | GKGCMC | 1 cut(s) | 1297 |
| BstV1I | GCAGC | 2 cut(s) | 163, 602 |
| BstV2I | GAAGAC | 1 cut(s) | 393 |
| BstX2I | RGATCY | 1 cut(s) | 907 |
| BstYI | RGATCY | 1 cut(s) | 907 |
| Bsu15I | ATCGAT | 2 cut(s) | 585, 1354 |
| BsuI | GTATCC | 1 cut(s) | 248 |
| BsuRI | GGCC | 4 cut(s) | 94, 364, 850, 1523 |
| BsuTUI | ATCGAT | 2 cut(s) | 585, 1354 |
| BtgZI | GCGATG | 1 cut(s) | 859 |
| BtrI | CACGTC | 1 cut(s) | 707 |
| BtsCI | GGATG | 6 cut(s) | 73, 283, 343, 628, 889, 1434 |
| BtsIMutI | CAGTG | 3 cut(s) | 845, 1295, 1744 |
| Cac8I | GCNNGC | 2 cut(s) | 806, 1170 |
| CciI | TCATGA | 3 cut(s) | 1014, 1264, 1537 |
| CfoI | GCGC | 1 cut(s) | 1464 |
| Cfr13I | GGNCC | 4 cut(s) | 92, 329, 362, 1522 |
| ClaI | ATCGAT | 2 cut(s) | 585, 1354 |
| Csp6I | GTAC | 6 cut(s) | 323, 539, 577, 669, 1002, 1408 |
| CviAII | CATG | 9 cut(s) | 326, 464, 805, 862, 1015, 1034, 1265, 1532, 1538 |
| CviQI | GTAC | 6 cut(s) | 323, 539, 577, 669, 1002, 1408 |
| DdeI | CTNAG | 1 cut(s) | 243 |
| DinI | GGCGCC | 1 cut(s) | 1463 |
| DpnI | GATC | 6 cut(s) | 264, 630, 909, 1164, 1536, 1590 |
| DpnII | GATC | 6 cut(s) | 262, 628, 907, 1162, 1534, 1588 |
| DraIII | CACNNNGTG | 3 cut(s) | 354, 840, 1301 |
| EaeI | YGGCCR | 1 cut(s) | 848 |
| Eam1104I | CTCTTC | 2 cut(s) | 873, 1571 |
| EarI | CTCTTC | 2 cut(s) | 873, 1571 |
| Eco24I | GRGCYC | 1 cut(s) | 757 |
| Eco47I | GGWCC | 1 cut(s) | 329 |
| Eco57I | CTGAAG | 3 cut(s) | 105, 582, 1595 |
| Eco88I | CYCGRG | 1 cut(s) | 768 |
| EcoRI | GAATTC | 1 cut(s) | 1433 |
| EcoRII | CCWGG | 5 cut(s) | 331, 549, 1131, 1423, 1717 |
| EcoT38I | GRGCYC | 1 cut(s) | 757 |
| EgeI | GGCGCC | 1 cut(s) | 1463 |
| EheI | GGCGCC | 1 cut(s) | 1463 |
| FaeI | CATG | 9 cut(s) | 329, 467, 808, 865, 1018, 1037, 1268, 1535, 1541 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 138, 170 |
| FaqI | GGGAC | 2 cut(s) | 437, 1384 |
| FatI | CATG | 9 cut(s) | 325, 463, 804, 861, 1014, 1033, 1264, 1531, 1537 |
| FauI | CCCGC | 2 cut(s) | 920, 1218 |
| FauNDI | CATATG | 1 cut(s) | 942 |
| FbaI | TGATCA | 2 cut(s) | 628, 1534 |
| FblI | GTMKAC | 2 cut(s) | 831, 1137 |
| Fnu4HI | GCNGC | 2 cut(s) | 177, 616 |
| FokI | GGATG | 6 cut(s) | 60, 290, 350, 635, 896, 1441 |
| FriOI | GRGCYC | 1 cut(s) | 757 |
| Fsp4HI | GCNGC | 2 cut(s) | 177, 616 |
| FspBI | CTAG | 8 cut(s) | 801, 816, 981, 1074, 1503, 1512, 1758, 1767 |
| GlaI | GCGC | 1 cut(s) | 1463 |
| GluI | GCNGC | 2 cut(s) | 177, 616 |
| GsaI | CCCAGC | 3 cut(s) | 153, 1186, 1528 |
| GsuI | CTGGAG | 3 cut(s) | 1115, 1733, 1740 |
| HaeII | RGCGCY | 1 cut(s) | 1465 |
| HaeIII | GGCC | 4 cut(s) | 94, 364, 850, 1523 |
| HapII | CCGG | 3 cut(s) | 90, 931, 1607 |
| HhaI | GCGC | 1 cut(s) | 1464 |
| Hin1I | GRCGYC | 1 cut(s) | 1462 |
| Hin1II | CATG | 9 cut(s) | 329, 467, 808, 865, 1018, 1037, 1268, 1535, 1541 |
| Hin6I | GCGC | 1 cut(s) | 1462 |
| HinP1I | GCGC | 1 cut(s) | 1462 |
| HincII | GTYRAC | 3 cut(s) | 376, 779, 1138 |
| HindII | GTYRAC | 3 cut(s) | 376, 779, 1138 |
| HindIII | AAGCTT | 1 cut(s) | 641 |
| HinfI | GANTC | 6 cut(s) | 828, 934, 1190, 1210, 1356, 1694 |
| HpaII | CCGG | 3 cut(s) | 90, 931, 1607 |
| HphI | GGTGA | 5 cut(s) | 18, 191, 241, 1346, 1574 |
| Hpy166II | GTNNAC | 6 cut(s) | 376, 748, 779, 832, 1138, 1295 |
| Hpy188I | TCNGA | 6 cut(s) | 10, 53, 124, 562, 680, 1323 |
| Hpy188III | TCNNGA | 6 cut(s) | 816, 1015, 1265, 1484, 1512, 1538 |
| Hpy8I | GTNNAC | 6 cut(s) | 376, 748, 779, 832, 1138, 1295 |
| HpyAV | CCTTC | 3 cut(s) | 1452, 1475, 1479 |
| HpyCH4III | ACNGT | 8 cut(s) | 380, 598, 840, 1290, 1375, 1509, 1562, 1804 |
| HpyCH4IV | ACGT | 3 cut(s) | 706, 1449, 1476 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 91, 1030, 1154, 1301, 1646 |
| HpyF3I | CTNAG | 1 cut(s) | 243 |
| HpySE526I | ACGT | 3 cut(s) | 706, 1449, 1476 |
| Hsp92I | GRCGYC | 1 cut(s) | 1462 |
| Hsp92II | CATG | 9 cut(s) | 329, 467, 808, 865, 1018, 1037, 1268, 1535, 1541 |
| HspAI | GCGC | 1 cut(s) | 1462 |
| KasI | GGCGCC | 1 cut(s) | 1461 |
| Ksp22I | TGATCA | 2 cut(s) | 628, 1534 |
| Kzo9I | GATC | 6 cut(s) | 262, 628, 907, 1162, 1534, 1588 |
| LmnI | GCTCC | 2 cut(s) | 1021, 1714 |
| Lsp1109I | GCAGC | 2 cut(s) | 163, 602 |
| LweI | GCATC | 7 cut(s) | 268, 448, 671, 1144, 1658, 1714, 1770 |
| MaeI | CTAG | 8 cut(s) | 801, 816, 981, 1074, 1503, 1512, 1758, 1767 |
| MaeII | ACGT | 3 cut(s) | 706, 1449, 1476 |
| MaeIII | GTNAC | 7 cut(s) | 67, 433, 724, 926, 1242, 1556, 1753 |
| MalI | GATC | 6 cut(s) | 264, 630, 909, 1164, 1536, 1590 |
| MbiI | CCGCTC | 1 cut(s) | 1225 |
| MboI | GATC | 6 cut(s) | 262, 628, 907, 1162, 1534, 1588 |
| MboII | GAAGA | 7 cut(s) | 188, 385, 398, 440, 890, 1588, 1594 |
| MflI | RGATCY | 1 cut(s) | 907 |
| MhlI | GDGCHC | 3 cut(s) | 757, 1087, 1297 |
| MlsI | TGGCCA | 1 cut(s) | 850 |
| MluCI | AATT | 9 cut(s) | 78, 204, 633, 948, 1025, 1231, 1433, 1732, 1781 |
| MluNI | TGGCCA | 1 cut(s) | 850 |
| Mly113I | GGCGCC | 1 cut(s) | 1462 |
| MlyI | GAGTC | 3 cut(s) | 837, 928, 1204 |
| MmeI | TCCRAC | 2 cut(s) | 31, 108 |
| Mox20I | TGGCCA | 1 cut(s) | 850 |
| MscI | TGGCCA | 1 cut(s) | 850 |
| MseI | TTAA | 5 cut(s) | 219, 483, 609, 639, 1344 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1269, 1536 |
| Msp20I | TGGCCA | 1 cut(s) | 850 |
| MspCI | CTTAAG | 1 cut(s) | 638 |
| MspI | CCGG | 3 cut(s) | 90, 931, 1607 |
| MspR9I | CCNGG | 6 cut(s) | 91, 333, 551, 1133, 1425, 1719 |
| Mva1269I | GAATGC | 1 cut(s) | 101 |
| MvaI | CCWGG | 5 cut(s) | 333, 551, 1133, 1425, 1719 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 91, 1030, 1154, 1301, 1646 |
| NarI | GGCGCC | 1 cut(s) | 1462 |
| NciI | CCSGG | 1 cut(s) | 91 |
| NdeI | CATATG | 1 cut(s) | 942 |
| NdeII | GATC | 6 cut(s) | 262, 628, 907, 1162, 1534, 1588 |
| NlaIII | CATG | 9 cut(s) | 329, 467, 808, 865, 1018, 1037, 1268, 1535, 1541 |
| NlaIV | GGNNCC | 4 cut(s) | 909, 1253, 1463, 1716 |
| NmuCI | GTSAC | 3 cut(s) | 67, 433, 926 |
| NspI | RCATGY | 1 cut(s) | 808 |
| NspV | TTCGAA | 3 cut(s) | 601, 1092, 1776 |
| PaeI | GCATGC | 1 cut(s) | 808 |
| PagI | TCATGA | 3 cut(s) | 1014, 1264, 1537 |
| PctI | GAATGC | 1 cut(s) | 101 |
| PfeI | GAWTC | 3 cut(s) | 1190, 1356, 1694 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 46 |
| PkrI | GCNGC | 2 cut(s) | 178, 617 |
| PleI | GAGTC | 3 cut(s) | 836, 928, 1204 |
| PluTI | GGCGCC | 1 cut(s) | 1465 |
| PpsI | GAGTC | 3 cut(s) | 836, 928, 1204 |
| Ppu21I | YACGTR | 1 cut(s) | 1477 |
| PsiI | TTATAA | 2 cut(s) | 953, 1494 |
| Psp6I | CCWGG | 5 cut(s) | 331, 549, 1131, 1423, 1717 |
| PspFI | CCCAGC | 3 cut(s) | 149, 1182, 1524 |
| PspGI | CCWGG | 5 cut(s) | 331, 549, 1131, 1423, 1717 |
| PspN4I | GGNNCC | 4 cut(s) | 909, 1253, 1463, 1716 |
| PspPI | GGNCC | 4 cut(s) | 92, 329, 362, 1522 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 968, 1000 |
| PstI | CTGCAG | 1 cut(s) | 620 |
| PsuI | RGATCY | 1 cut(s) | 907 |
| RsaI | GTAC | 6 cut(s) | 324, 540, 578, 670, 1003, 1409 |
| RsaNI | GTAC | 6 cut(s) | 323, 539, 577, 669, 1002, 1408 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1269, 1536 |
| SalI | GTCGAC | 1 cut(s) | 1136 |
| SaqAI | TTAA | 5 cut(s) | 219, 483, 609, 639, 1344 |
| SatI | GCNGC | 2 cut(s) | 177, 616 |
| Sau3AI | GATC | 6 cut(s) | 262, 628, 907, 1162, 1534, 1588 |
| Sau96I | GGNCC | 4 cut(s) | 92, 329, 362, 1522 |
| SchI | GAGTC | 3 cut(s) | 837, 928, 1204 |
| ScrFI | CCNGG | 6 cut(s) | 91, 333, 551, 1133, 1425, 1719 |
| SduI | GDGCHC | 3 cut(s) | 757, 1087, 1297 |
| SfaNI | GCATC | 7 cut(s) | 268, 448, 671, 1144, 1658, 1714, 1770 |
| SfcI | CTRYAG | 1 cut(s) | 616 |
| SfoI | GGCGCC | 1 cut(s) | 1463 |
| SfuI | TTCGAA | 3 cut(s) | 601, 1092, 1776 |
| SinI | GGWCC | 1 cut(s) | 329 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1269, 1536 |
| SmlI | CTYRAG | 2 cut(s) | 638, 685 |
| SmoI | CTYRAG | 2 cut(s) | 638, 685 |
| SpeI | ACTAGT | 1 cut(s) | 1766 |
| SphI | GCATGC | 1 cut(s) | 808 |
| Sse9I | AATT | 9 cut(s) | 78, 204, 633, 948, 1025, 1231, 1433, 1732, 1781 |
| SsiI | CCGC | 4 cut(s) | 32, 44, 913, 1225 |
| SspDI | GGCGCC | 1 cut(s) | 1461 |
| SspMI | CTAG | 8 cut(s) | 801, 816, 981, 1074, 1503, 1512, 1758, 1767 |
| StyD4I | CCNGG | 6 cut(s) | 89, 331, 549, 1131, 1423, 1717 |
| TaaI | ACNGT | 8 cut(s) | 380, 598, 840, 1290, 1375, 1509, 1562, 1804 |
| TaiI | ACGT | 3 cut(s) | 709, 1452, 1479 |
| TasI | AATT | 9 cut(s) | 78, 204, 633, 948, 1025, 1231, 1433, 1732, 1781 |
| TatI | WGTACW | 3 cut(s) | 576, 668, 1407 |
| TfiI | GAWTC | 3 cut(s) | 1190, 1356, 1694 |
| Tru1I | TTAA | 5 cut(s) | 219, 483, 609, 639, 1344 |
| Tru9I | TTAA | 5 cut(s) | 219, 483, 609, 639, 1344 |
| TscAI | CASTG | 3 cut(s) | 845, 1295, 1744 |
| TseFI | GTSAC | 3 cut(s) | 67, 433, 926 |
| TseI | GCWGC | 2 cut(s) | 176, 615 |
| Tsp45I | GTSAC | 3 cut(s) | 67, 433, 926 |
| TspDTI | ATGAA | 5 cut(s) | 174, 491, 900, 989, 1554 |
| TspGWI | ACGGA | 2 cut(s) | 78, 998 |
| TspRI | CASTG | 3 cut(s) | 845, 1295, 1744 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 46 |
| Vha464I | CTTAAG | 1 cut(s) | 638 |
| VneI | GTGCAC | 1 cut(s) | 1293 |
| VpaK11BI | GGWCC | 1 cut(s) | 329 |
| XapI | RAATTY | 4 cut(s) | 633, 1433, 1732, 1781 |
| XbaI | TCTAGA | 2 cut(s) | 815, 1511 |
| XceI | RCATGY | 1 cut(s) | 808 |
| XmiI | GTMKAC | 2 cut(s) | 831, 1137 |
| XspI | CTAG | 8 cut(s) | 801, 816, 981, 1074, 1503, 1512, 1758, 1767 |