Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0000312

Physical Location & Seq

Genomic Coordinates Forward (+)

9703267 .. 9709228

Gene Structure 5962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1110400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2052 bp

ATGGCGGGTTCTGAGGATCCAGTGGCCTCTTCCCCGGCTGAGCAGCCGCCAAAGCACTACGGCACCACCAGGCCAATCTTCCTTTCCGGTCCTACCGAGTATGATCTTCAACGAAATGTCGAACTCGAAAAGTACTTGATTGATTCGGGACTTTACGAGAGTAAAGACGAGGCTGCGAAGAGAGAAGAGGTTCTTGGTCGCATTGATCAGATTGTGAAAGGCTGGGTGAAGCAGTTGACAAGTGAAAGAGGCTACACAGATCAGATGGTGGAGGACGCGAATGCTGTCATTTTTACTTTTGGGTCTTATCGTCTTGGGGTTCATGGGCCTGGAGCTGACATAGACACTTTGTGTGTTGGGCCATCATATGTGAATCGAGAGGAAGATTTCTTTATTATATTGCATGATATCCTTGCTGAATTGGAAGAGGTTACTGAACTTCAACCAGTTCCTGATGCTCATGTCCCCGTCATGAAATTCAAGTTCCAGGGAATATCAATAGATCTTTTGTATGCAAGCATCTCTCTTTTGGTTGTTCCAGAAGATGTAGACATCTCATATGGATCTGTGCTATATGATGTTGATGAGCAAACTGTTCGAAGTCTGAACGGCTGCAGGGTTGCAGATCAAATTCTTAAACTTGTCCCCAATGTTGAGCACTTCCGGACGACACTCAGATGTTTGAAGTTTTGGGCTAAAAGACGTGGTGTTTATTCAAATGTTACTGGATTCCTTGGTGGTGTAAATTGGGCTATCTTAGTTGCTCGGATATGCCAGCTTTATCCCAATGCAATTCCTAGCGTGTTGGTTTCCAAATTTTTCAGAGTGTATACTCAGTGGCGTTGGCCAAATCCTGTAATTTTATGTTCAATTGAAGAGAATGAACTTGGGTTCCCTACATGGGACCCTCGTAAAAACCCTCGGGACCGCCTTCATCATATGCCAATAATAACTCCTGCATACCCTTGCATGAACTCTAGTTACAATGTCTCAGTAAGTACTTTACGTGTTATGGCGGAGCAGTTTGACCATGGTAATAGGATATGTGAGGAGATTGAGCTGAATAAGGCCCAGTGGAGTGCTCTCTTTGAACCTTATCTCTTCTTTCAGGCATACAAAAATTATCTACAAGTGGACATAGTTGCAGCTGATGTTGATGACTTGCTGACGTGGAAGGGATGGGTGGAATCCCGGTTTAGACAGCTTACCCTGAAGATAGAGCGAGACACGAAAGGGATGCTGCAGTGCCATCCATATCCTAAGGAATATGTCGACGTATCCAAGCAATGCCCGCACTGTGCTTTCTTTATGGGTTTGCAGAGGAAAGAGGGAGTGAGAGGTAAAGAAGGTCAGCAATTTGATATACGTGGAACAGTCGATGAGTTCAGGGAAGGAATAAACATGTACATGTTCTGGAAACCCGGGATGGATATATATGTTTCTCATGTTCGCCGGAAGCAGCTTCCTCCCTTTGTTTTCCCCGATGGGTGTAAGCGGCCTCGATTATCAAGGCATGTAAGTCAGCACGACGAAAGAACTTATGAAGATTCTGCAGGTTGTAGTTCTGGGTCTGCGGAAAGACATACCAGGAGGAAAATTGATCATAAAACAGAGGATGTGAGGGCAATCAAACTCGAGAAGCAGACATCTGTTAGTTCACAATTGATGGAGTCTGTGGCCCCAGAAAGTAGTACAGGTGGAGCACCTGATACCAGCTTCAGTAACAGCATTAGGTTAGAGTGTCTGGCAACTGGAGATGCAGAAAAGAAATCTGATAGTAGATTGCCTGTTGAACAGTTAGAGAGTGAAAGGGGAAGTGTTGGAAACGTGAGAATGGTTGATAATGTTGTGTACGAATCCAATACTATAAGCGAGTGCACATCTATGCATGTTCCTGAATTCCCCAAAGTCAGAAATGAGGTCAAGCCTTCACAAGAGGATTATGAGGTAAAACCATCTGAACAGTTGGAGAAACCTCTTCCCTGGAAGGAGCTGGTAATTCCATGTGCAGCTTCTATCTCAGAGTCCAAGGAAACATGTGAGATGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004652 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

NTP_transf_2 PAP_RNA-bind PAP_central

Protein Analysis

684

Amino Acids

77.79

Weight (kDa)

5.46

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_NTPase	PF20750	21 - 215	1.5e-72	Poly(A) polymerase nucleotidyltransferase domain
NTP_transf_2	PF01909	94 - 171	4.8e-10	Nucleotidyltransferase domain
PAP_central	PF04928	220 - 364	2.8e-69	Poly(A) polymerase central domain
PAP_RNA-bind	PF04926	368 - 426	3.5e-12	Poly(A) polymerase predicted RNA binding domain
PAP_RNA-bind	PF04926	431 - 501	1e-05	Poly(A) polymerase predicted RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850
fragaria_vesca	FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471
malus_domestica	MD08G1110400.v1.1 MD09G1202000.v1.1 MD09G1202100.v1.1 MD17G1182800.v1.1
prunus_persica	Prupe.1G444600_v2.0.a1 Prupe.3G057600_v2.0.a1 Prupe.3G057600_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1
pyrus_communis	pycom08g09190 pycom09g11890 pycom15g08420 pycom17g19200
rosa_chinensis	RchiOBHm_Chr2g0140721 RchiOBHm_Chr2g0140741 RchiOBHm_Chr2g0140761 RchiOBHm_Chr6g0306691
rosa_laevigata	RLG00000010773 RLG00000019895 RLG00000019896
rosa_multiflora	Rmu_co8193342.1_g000001 Rmu_sc0003342.1_g000015 Rmu_sc0003342.1_g000021 Rmu_sc0003342.1_g000026 Rmu_sc0005201.1_g000002 Rmu_sc0017785.1_g000009
rosa_roxburghii	Rroxscaffold_2G00104510 Rroxscaffold_2G00104540 Rroxscaffold_7G00161540
rosa_rugosa	Rorug02G0364600 Rorug02G0364700 Rorug02G0364800 Rorug02G0364900 Rorug02G0365000 Rorug06G0351600 Rorug06G0351700
rosa_samantha	Rh2AG416100 Rh2AG416200 Rh2AG416300 Rh2BG425700 Rh2BG425800 Rh2BG425900 Rh2CG402300 Rh2CG402400 Rh2CG402500 Rh2DG435600 Rh2DG435700 Rh2DG435800 Rh6AG464000 Rh6BG437000 Rh6CG478100 Rh6DG464900
rosa_wichuraiana	Rw2G034050 Rw2G034060 Rw6G040420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1544
AccB1I	GGYRCC	1 cut(s)	62
AccI	GTMKAC	3 cut(s)	549, 830, 1272
AccII	CGCG	1 cut(s)	278
AccIII	TCCGGA	1 cut(s)	663
AciI	CCGC	7 cut(s)	5, 47, 928, 1016, 1292, 1495, 1574
AclWI	GGATC	3 cut(s)	11, 24, 571
AcoI	YGGCCR	1 cut(s)	845
AcsI	RAATTY	4 cut(s)	476, 630, 815, 1898
AcuI	CTGAAG	2 cut(s)	1232, 1702
AdeI	CACNNNGTG	1 cut(s)	351
AfaI	GTAC	5 cut(s)	134, 1000, 1406, 1693, 1853
AfiI	CCNNNNNNNGG	1 cut(s)	901
AflIII	ACRYGT	4 cut(s)	1006, 1401, 1407, 2036
AgsI	TTSAA	9 cut(s)	110, 443, 481, 685, 717, 870, 875, 1091, 1793
AjiI	CACGTC	2 cut(s)	704, 1170
AjnI	CCWGG	5 cut(s)	68, 328, 486, 1586, 1982
AjuI	GAANNNNNNNTTGG	4 cut(s)	67, 99, 177, 209
AloI	GAACNNNNNNTCC	2 cut(s)	876, 908
AluBI	AGCT	9 cut(s)	335, 778, 1060, 1148, 1204, 1462, 1716, 1993, 2012
AluI	AGCT	9 cut(s)	335, 778, 1060, 1148, 1204, 1462, 1716, 1993, 2012
Alw21I	GWGCWC	4 cut(s)	660, 1084, 1705, 1880
Alw26I	GTCTC	2 cut(s)	994, 1218
Alw44I	GTGCAC	1 cut(s)	1876
AlwI	GGATC	3 cut(s)	11, 24, 571
AlwNI	CAGNNNCTG	1 cut(s)	452
Ama87I	CYCGRG	3 cut(s)	921, 1421, 1634
Aor13HI	TCCGGA	1 cut(s)	663
AoxI	GGCC	9 cut(s)	24, 71, 326, 359, 845, 1068, 1496, 1677, 2046
ApaLI	GTGCAC	1 cut(s)	1876
ApeKI	GCWGC	7 cut(s)	43, 173, 612, 1145, 1240, 1459, 2009
ApoI	RAATTY	4 cut(s)	476, 630, 815, 1898
Asp700I	GAANNNNTTC	1 cut(s)	189
AspS9I	GGNCC	7 cut(s)	89, 326, 359, 904, 925, 1069, 1678
AsuC2I	CCSGG	4 cut(s)	35, 1192, 1422, 1423
AsuHPI	GGTGA	1 cut(s)	238
AsuII	TTCGAA	1 cut(s)	598
AvaI	CYCGRG	3 cut(s)	921, 1421, 1634
AvaII	GGWCC	3 cut(s)	89, 904, 925
AxyI	CCTNAGG	1 cut(s)	1260
BaeGI	GKGCMC	1 cut(s)	1880
BalI	TGGCCA	1 cut(s)	847
BamHI	GGATCC	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	62
Bbv12I	GWGCWC	4 cut(s)	660, 1084, 1705, 1880
BbvI	GCAGC	7 cut(s)	55, 160, 599, 1157, 1227, 1471, 2021
BccI	CCATC	9 cut(s)	259, 370, 1173, 1257, 1420, 1478, 1660, 1963, 2038
BceAI	ACGGC	2 cut(s)	76, 625
BcgI	CGANNNNNNTGC	4 cut(s)	578, 612, 1219, 1253
BciT130I	CCWGG	5 cut(s)	70, 330, 488, 1588, 1984
BciVI	GTATCC	1 cut(s)	1288
BclI	TGATCA	2 cut(s)	205, 1600
BcnI	CCSGG	4 cut(s)	35, 1192, 1422, 1423
BcoDI	GTCTC	2 cut(s)	994, 1218
BfaI	CTAG	2 cut(s)	798, 978
BfmI	CTRYAG	3 cut(s)	613, 1241, 1551
BfuAI	ACCTGC	1 cut(s)	1544
BfuI	GTATCC	1 cut(s)	1288
BglII	AGATCT	1 cut(s)	502
BisI	GCNGC	9 cut(s)	44, 47, 174, 613, 1146, 1241, 1460, 1496, 2010
BlpI	GCTNAGC	1 cut(s)	39
BlsI	GCNGC	9 cut(s)	45, 48, 175, 614, 1147, 1242, 1461, 1497, 2011
BmcAI	AGTACT	2 cut(s)	134, 1000
Bme1390I	CCNGG	9 cut(s)	35, 70, 330, 488, 1192, 1422, 1423, 1588, 1984
Bme18I	GGWCC	3 cut(s)	89, 904, 925
BmeT110I	CYCGRG	3 cut(s)	921, 1421, 1634
BmgBI	CACGTC	2 cut(s)	704, 1170
BmgT120I	GGNCC	7 cut(s)	89, 326, 359, 904, 925, 1069, 1678
BmiI	GGNNCC	7 cut(s)	18, 64, 893, 905, 906, 926, 1680
BmrFI	CCNGG	9 cut(s)	35, 70, 330, 488, 1192, 1422, 1423, 1588, 1984
BmrI	ACTGGG	1 cut(s)	1066
BmsI	GCATC	4 cut(s)	445, 528, 1227, 1747
BmuI	ACTGGG	1 cut(s)	1066
BpmI	CTGGAG	2 cut(s)	351, 1773
Bpu1102I	GCTNAGC	1 cut(s)	39
Bpu14I	TTCGAA	1 cut(s)	598
BpuMI	CCSGG	4 cut(s)	35, 1192, 1422, 1423
BsaAI	YACGTR	2 cut(s)	1007, 1367
BsaJI	CCNNGG	8 cut(s)	33, 487, 733, 920, 1030, 1421, 1982, 2028
BsaWI	WCCGGW	2 cut(s)	86, 663
Bsc4I	CCNNNNNNNGG	1 cut(s)	901
Bse1I	ACTGG	5 cut(s)	20, 446, 730, 1072, 1756
Bse21I	CCTNAGG	1 cut(s)	1260
Bse3DI	GCAATG	1 cut(s)	1292
BseAI	TCCGGA	1 cut(s)	663
BseBI	CCWGG	5 cut(s)	70, 330, 488, 1588, 1984
BseDI	CCNNGG	8 cut(s)	33, 487, 733, 920, 1030, 1421, 1982, 2028
BseGI	GGATG	5 cut(s)	1184, 1242, 1249, 1431, 1621
BseLI	CCNNNNNNNGG	1 cut(s)	901
BseMI	GCAATG	1 cut(s)	1292
BseMII	CTCAG	5 cut(s)	30, 688, 848, 1005, 2034
BseNI	ACTGG	5 cut(s)	20, 446, 730, 1072, 1756
BseRI	GAGGAG	1 cut(s)	1064
BseSI	GKGCMC	1 cut(s)	1880
BseXI	GCAGC	7 cut(s)	55, 160, 599, 1157, 1227, 1471, 2021
BseYI	CCCAGC	1 cut(s)	222
BsgI	GTGCAG	1 cut(s)	2028
Bsh1236I	CGCG	1 cut(s)	278
BshFI	GGCC	9 cut(s)	26, 73, 328, 361, 847, 1070, 1498, 1679, 2048
BshNI	GGYRCC	1 cut(s)	62
BsiHKAI	GWGCWC	4 cut(s)	660, 1084, 1705, 1880
BsiHKCI	CYCGRG	3 cut(s)	921, 1421, 1634
BsiSI	CCGG	6 cut(s)	35, 87, 664, 1192, 1422, 1453
BslFI	GGGAC	5 cut(s)	162, 449, 629, 917, 938
BslI	CCNNNNNNNGG	1 cut(s)	901
BsmAI	GTCTC	2 cut(s)	994, 1218
BsmFI	GGGAC	5 cut(s)	162, 449, 629, 917, 938
BsmI	GAATGC	1 cut(s)	286
BsnI	GGCC	9 cut(s)	26, 73, 328, 361, 847, 1070, 1498, 1679, 2048
BsoBI	CYCGRG	3 cut(s)	921, 1421, 1634
Bsp119I	TTCGAA	1 cut(s)	598
Bsp1286I	GDGCHC	4 cut(s)	660, 1084, 1705, 1880
Bsp13I	TCCGGA	1 cut(s)	663
Bsp1407I	TGTACA	1 cut(s)	1404
Bsp143I	GATC	8 cut(s)	16, 103, 205, 259, 502, 563, 625, 1600
Bsp1720I	GCTNAGC	1 cut(s)	39
Bsp19I	CCATGG	1 cut(s)	1030
BspACI	CCGC	7 cut(s)	5, 47, 928, 1016, 1292, 1495, 1574
BspANI	GGCC	9 cut(s)	26, 73, 328, 361, 847, 1070, 1498, 1679, 2048
BspCNI	CTCAG	6 cut(s)	4, 31, 687, 847, 1004, 2033
BspEI	TCCGGA	1 cut(s)	663
BspFNI	CGCG	1 cut(s)	278
BspHI	TCATGA	1 cut(s)	471
BspLI	GGNNCC	7 cut(s)	18, 64, 893, 905, 906, 926, 1680
BspMAI	CTGCAG	3 cut(s)	617, 1245, 1555
BspMI	ACCTGC	1 cut(s)	1544
BspPI	GGATC	3 cut(s)	11, 24, 571
BspT104I	TTCGAA	1 cut(s)	598
BspT107I	GGYRCC	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	1292
BsrGI	TGTACA	1 cut(s)	1404
BsrI	ACTGG	5 cut(s)	20, 446, 730, 1072, 1756
BssECI	CCNNGG	8 cut(s)	33, 487, 733, 920, 1030, 1421, 1982, 2028
BssMI	GATC	8 cut(s)	16, 103, 205, 259, 502, 563, 625, 1600
BssNAI	GTATAC	1 cut(s)	831
BssT1I	CCWWGG	3 cut(s)	733, 1030, 2028
Bst1107I	GTATAC	1 cut(s)	831
Bst2UI	CCWGG	5 cut(s)	70, 330, 488, 1588, 1984
Bst4CI	ACNGT	5 cut(s)	595, 1298, 1375, 1797, 1965
Bst6I	CTCTTC	7 cut(s)	34, 173, 180, 420, 870, 1106, 1983
BstAUI	TGTACA	1 cut(s)	1404
BstBAI	YACGTR	2 cut(s)	1007, 1367
BstBI	TTCGAA	1 cut(s)	598
BstC8I	GCNNGC	3 cut(s)	517, 776, 1292
BstDEI	CTNAG	8 cut(s)	12, 39, 674, 757, 834, 991, 1260, 2020
BstDSI	CCRYGG	1 cut(s)	1030
BstF5I	GGATG	5 cut(s)	1184, 1242, 1249, 1431, 1621
BstFNI	CGCG	1 cut(s)	278
BstKTI	GATC	8 cut(s)	19, 106, 208, 262, 505, 566, 628, 1603
BstMAI	GTCTC	2 cut(s)	994, 1218
BstMBI	GATC	8 cut(s)	16, 103, 205, 259, 502, 563, 625, 1600
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 1291
BstNI	CCWGG	5 cut(s)	70, 330, 488, 1588, 1984
BstNSI	RCATGY	5 cut(s)	1405, 1411, 1517, 1892, 2040
BstSCI	CCNGG	9 cut(s)	33, 68, 328, 486, 1190, 1420, 1421, 1586, 1982
BstSFI	CTRYAG	3 cut(s)	613, 1241, 1551
BstSLI	GKGCMC	1 cut(s)	1880
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	7 cut(s)	55, 160, 599, 1157, 1227, 1471, 2021
BstX2I	RGATCY	3 cut(s)	16, 502, 563
BstYI	RGATCY	3 cut(s)	16, 502, 563
BstZ17I	GTATAC	1 cut(s)	831
Bsu36I	CCTNAGG	1 cut(s)	1260
BsuI	GTATCC	1 cut(s)	1288
BsuRI	GGCC	9 cut(s)	26, 73, 328, 361, 847, 1070, 1498, 1679, 2048
BtgI	CCRYGG	1 cut(s)	1030
BtrI	CACGTC	2 cut(s)	704, 1170
BtsCI	GGATG	5 cut(s)	1184, 1242, 1249, 1431, 1621
BtsI	GCAGTG	1 cut(s)	1250
BtsIMutI	CAGTG	5 cut(s)	27, 842, 1079, 1250, 1294
BveI	ACCTGC	1 cut(s)	1544
Cac8I	GCNNGC	3 cut(s)	517, 776, 1292
CaiI	CAGNNNCTG	1 cut(s)	452
CciI	TCATGA	1 cut(s)	471
Cfr13I	GGNCC	7 cut(s)	89, 326, 359, 904, 925, 1069, 1678
Cfr9I	CCCGGG	1 cut(s)	1421
CseI	GACGC	1 cut(s)	284
Csp6I	GTAC	5 cut(s)	133, 999, 1405, 1692, 1852
CviQI	GTAC	5 cut(s)	133, 999, 1405, 1692, 1852
DdeI	CTNAG	8 cut(s)	12, 39, 674, 757, 834, 991, 1260, 2020
DpnI	GATC	8 cut(s)	18, 105, 207, 261, 504, 565, 627, 1602
DpnII	GATC	8 cut(s)	16, 103, 205, 259, 502, 563, 625, 1600
DraIII	CACNNNGTG	1 cut(s)	351
EaeI	YGGCCR	1 cut(s)	845
Eam1104I	CTCTTC	7 cut(s)	34, 173, 180, 420, 870, 1106, 1983
EarI	CTCTTC	7 cut(s)	34, 173, 180, 420, 870, 1106, 1983
EciI	GGCGGA	1 cut(s)	1031
Eco130I	CCWWGG	3 cut(s)	733, 1030, 2028
Eco32I	GATATC	1 cut(s)	409
Eco47I	GGWCC	3 cut(s)	89, 904, 925
Eco57I	CTGAAG	2 cut(s)	1232, 1702
Eco81I	CCTNAGG	1 cut(s)	1260
Eco88I	CYCGRG	3 cut(s)	921, 1421, 1634
EcoO109I	RGGNCCY	1 cut(s)	904
EcoRI	GAATTC	1 cut(s)	1898
EcoRII	CCWGG	5 cut(s)	68, 328, 486, 1586, 1982
EcoRV	GATATC	1 cut(s)	409
EcoT14I	CCWWGG	3 cut(s)	733, 1030, 2028
EcoT22I	ATGCAT	1 cut(s)	1890
ErhI	CCWWGG	3 cut(s)	733, 1030, 2028
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FaqI	GGGAC	5 cut(s)	162, 449, 629, 917, 938
FauI	CCCGC	1 cut(s)	1299
FauNDI	CATATG	3 cut(s)	367, 559, 939
FbaI	TGATCA	2 cut(s)	205, 1600
FblI	GTMKAC	3 cut(s)	549, 830, 1272
Fnu4HI	GCNGC	9 cut(s)	44, 47, 174, 613, 1146, 1241, 1460, 1496, 2010
FokI	GGATG	5 cut(s)	1191, 1236, 1249, 1438, 1628
Fsp4HI	GCNGC	9 cut(s)	44, 47, 174, 613, 1146, 1241, 1460, 1496, 2010
FspBI	CTAG	2 cut(s)	798, 978
GluI	GCNGC	9 cut(s)	44, 47, 174, 613, 1146, 1241, 1460, 1496, 2010
GsaI	CCCAGC	1 cut(s)	226
GsuI	CTGGAG	2 cut(s)	351, 1773
HaeIII	GGCC	9 cut(s)	26, 73, 328, 361, 847, 1070, 1498, 1679, 2048
HapII	CCGG	6 cut(s)	35, 87, 664, 1192, 1422, 1453
HgaI	GACGC	1 cut(s)	284
HincII	GTYRAC	2 cut(s)	237, 1273
HindII	GTYRAC	2 cut(s)	237, 1273
HinfI	GANTC	8 cut(s)	143, 373, 729, 1187, 1547, 1670, 1856, 2024
HpaII	CCGG	6 cut(s)	35, 87, 664, 1192, 1422, 1453
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	8 cut(s)	237, 550, 831, 1135, 1273, 1658, 1852, 1878
Hpy8I	GTNNAC	8 cut(s)	237, 550, 831, 1135, 1273, 1658, 1852, 1878
Hpy99I	CGWCG	2 cut(s)	1277, 1532
HpyAV	CCTTC	6 cut(s)	941, 1168, 1340, 1385, 1938, 1981
HpyCH4III	ACNGT	5 cut(s)	595, 1298, 1375, 1797, 1965
HpyCH4IV	ACGT	6 cut(s)	703, 1006, 1169, 1275, 1366, 1827
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 1291
HpyF3I	CTNAG	8 cut(s)	12, 39, 674, 757, 834, 991, 1260, 2020
HpySE526I	ACGT	6 cut(s)	703, 1006, 1169, 1275, 1366, 1827
KflI	GGGWCCC	1 cut(s)	904
Kpn2I	TCCGGA	1 cut(s)	663
Ksp22I	TGATCA	2 cut(s)	205, 1600
Kzo9I	GATC	8 cut(s)	16, 103, 205, 259, 502, 563, 625, 1600
LmnI	GCTCC	4 cut(s)	332, 1018, 1700, 1990
Lsp1109I	GCAGC	7 cut(s)	55, 160, 599, 1157, 1227, 1471, 2021
LweI	GCATC	4 cut(s)	445, 528, 1227, 1747
MaeI	CTAG	2 cut(s)	798, 978
MaeII	ACGT	6 cut(s)	703, 1006, 1169, 1275, 1366, 1827
MaeIII	GTNAC	4 cut(s)	430, 721, 980, 1721
MalI	GATC	8 cut(s)	18, 105, 207, 261, 504, 565, 627, 1602
MboI	GATC	8 cut(s)	16, 103, 205, 259, 502, 563, 625, 1600
MfeI	CAATTG	2 cut(s)	870, 1661
MflI	RGATCY	3 cut(s)	16, 502, 563
MhlI	GDGCHC	4 cut(s)	660, 1084, 1705, 1880
MlsI	TGGCCA	1 cut(s)	847
MluNI	TGGCCA	1 cut(s)	847
MlyI	GAGTC	2 cut(s)	1679, 2033
MmeI	TCCRAC	2 cut(s)	1801, 1947
Mox20I	TGGCCA	1 cut(s)	847
Mph1103I	ATGCAT	1 cut(s)	1890
MroI	TCCGGA	1 cut(s)	663
MroXI	GAANNNNTTC	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	847
MseI	TTAA	1 cut(s)	636
MslI	CAYNNNNRTG	3 cut(s)	676, 1406, 1883
Msp20I	TGGCCA	1 cut(s)	847
MspA1I	CMGCKG	1 cut(s)	1148
MspI	CCGG	6 cut(s)	35, 87, 664, 1192, 1422, 1453
MspR9I	CCNGG	9 cut(s)	35, 70, 330, 488, 1192, 1422, 1423, 1588, 1984
MunI	CAATTG	2 cut(s)	870, 1661
Mva1269I	GAATGC	1 cut(s)	286
MvaI	CCWGG	5 cut(s)	70, 330, 488, 1588, 1984
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	2 cut(s)	52, 1291
NciI	CCSGG	4 cut(s)	35, 1192, 1422, 1423
NcoI	CCATGG	1 cut(s)	1030
NdeI	CATATG	3 cut(s)	367, 559, 939
NdeII	GATC	8 cut(s)	16, 103, 205, 259, 502, 563, 625, 1600
NlaIV	GGNNCC	7 cut(s)	18, 64, 893, 905, 906, 926, 1680
NsiI	ATGCAT	1 cut(s)	1890
NspI	RCATGY	5 cut(s)	1405, 1411, 1517, 1892, 2040
NspV	TTCGAA	1 cut(s)	598
PaeR7I	CTCGAG	1 cut(s)	1634
PagI	TCATGA	1 cut(s)	471
PciI	ACATGT	3 cut(s)	1401, 1407, 2036
PctI	GAATGC	1 cut(s)	286
PdmI	GAANNNNTTC	1 cut(s)	189
PfeI	GAWTC	6 cut(s)	143, 373, 729, 1187, 1547, 1856
PkrI	GCNGC	9 cut(s)	45, 48, 175, 614, 1147, 1242, 1461, 1497, 2011
PleI	GAGTC	2 cut(s)	1678, 2032
PpsI	GAGTC	2 cut(s)	1678, 2032
Ppu21I	YACGTR	2 cut(s)	1007, 1367
PpuMI	RGGWCCY	1 cut(s)	904
PscI	ACATGT	3 cut(s)	1401, 1407, 2036
Psp5II	RGGWCCY	1 cut(s)	904
Psp6I	CCWGG	5 cut(s)	68, 328, 486, 1586, 1982
PspFI	CCCAGC	1 cut(s)	222
PspGI	CCWGG	5 cut(s)	68, 328, 486, 1586, 1982
PspN4I	GGNNCC	7 cut(s)	18, 64, 893, 905, 906, 926, 1680
PspPI	GGNCC	7 cut(s)	89, 326, 359, 904, 925, 1069, 1678
PspPPI	RGGWCCY	1 cut(s)	904
PsrI	GAACNNNNNNTAC	2 cut(s)	965, 997
PstI	CTGCAG	3 cut(s)	617, 1245, 1555
PstNI	CAGNNNCTG	1 cut(s)	452
PsuI	RGATCY	3 cut(s)	16, 502, 563
PvuII	CAGCTG	1 cut(s)	1148
RsaI	GTAC	5 cut(s)	134, 1000, 1406, 1693, 1853
RsaNI	GTAC	5 cut(s)	133, 999, 1405, 1692, 1852
RseI	CAYNNNNRTG	3 cut(s)	676, 1406, 1883
SalI	GTCGAC	1 cut(s)	1271
SaqAI	TTAA	1 cut(s)	636
SatI	GCNGC	9 cut(s)	44, 47, 174, 613, 1146, 1241, 1460, 1496, 2010
Sau3AI	GATC	8 cut(s)	16, 103, 205, 259, 502, 563, 625, 1600
Sau96I	GGNCC	7 cut(s)	89, 326, 359, 904, 925, 1069, 1678
ScaI	AGTACT	2 cut(s)	134, 1000
SchI	GAGTC	2 cut(s)	1679, 2033
ScrFI	CCNGG	9 cut(s)	35, 70, 330, 488, 1192, 1422, 1423, 1588, 1984
SduI	GDGCHC	4 cut(s)	660, 1084, 1705, 1880
SfaNI	GCATC	4 cut(s)	445, 528, 1227, 1747
SfcI	CTRYAG	3 cut(s)	613, 1241, 1551
Sfr274I	CTCGAG	1 cut(s)	1634
SfuI	TTCGAA	1 cut(s)	598
SinI	GGWCC	3 cut(s)	89, 904, 925
SlaI	CTCGAG	1 cut(s)	1634
SmaI	CCCGGG	1 cut(s)	1423
SmiMI	CAYNNNNRTG	3 cut(s)	676, 1406, 1883
SmlI	CTYRAG	1 cut(s)	1634
SmoI	CTYRAG	1 cut(s)	1634
SsiI	CCGC	7 cut(s)	5, 47, 928, 1016, 1292, 1495, 1574
SspMI	CTAG	2 cut(s)	798, 978
StyD4I	CCNGG	9 cut(s)	33, 68, 328, 486, 1190, 1420, 1421, 1586, 1982
StyI	CCWWGG	3 cut(s)	733, 1030, 2028
TaaI	ACNGT	5 cut(s)	595, 1298, 1375, 1797, 1965
TaiI	ACGT	6 cut(s)	706, 1009, 1172, 1278, 1369, 1830
TaqI	TCGA	8 cut(s)	120, 126, 376, 598, 1272, 1377, 1501, 1635
TatI	WGTACW	4 cut(s)	132, 998, 1404, 1691
TauI	GCSGC	2 cut(s)	49, 1498
TfiI	GAWTC	6 cut(s)	143, 373, 729, 1187, 1547, 1856
Tru1I	TTAA	1 cut(s)	636
Tru9I	TTAA	1 cut(s)	636
TscAI	CASTG	5 cut(s)	27, 842, 1079, 1250, 1301
TseI	GCWGC	7 cut(s)	43, 173, 612, 1145, 1240, 1459, 2009
TspDTI	ATGAA	6 cut(s)	311, 488, 897, 923, 986, 1557
TspMI	CCCGGG	1 cut(s)	1421
TspRI	CASTG	5 cut(s)	27, 842, 1079, 1250, 1301
VneI	GTGCAC	1 cut(s)	1876
VpaK11BI	GGWCC	3 cut(s)	89, 904, 925
XapI	RAATTY	4 cut(s)	476, 630, 815, 1898
XceI	RCATGY	5 cut(s)	1405, 1411, 1517, 1892, 2040
XhoI	CTCGAG	1 cut(s)	1634
XmaI	CCCGGG	1 cut(s)	1421
XmiI	GTMKAC	3 cut(s)	549, 830, 1272
XmnI	GAANNNNTTC	1 cut(s)	189
XspI	CTAG	2 cut(s)	798, 978
ZrmI	AGTACT	2 cut(s)	134, 1000
Zsp2I	ATGCAT	1 cut(s)	1890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.