Poly(A) polymerase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PAP_NTPase | PF20750 | 22 - 216 | 4.9e-77 | Poly(A) polymerase nucleotidyltransferase domain |
| NTP_transf_2 | PF01909 | 83 - 172 | 4.3e-10 | Nucleotidyltransferase domain |
| PAP_central | PF04928 | 221 - 365 | 1.3e-68 | Poly(A) polymerase central domain |
| PAP_RNA-bind | PF04926 | 369 - 431 | 1.6e-10 | Poly(A) polymerase predicted RNA binding domain |
| PAP_RNA-bind | PF04926 | 428 - 501 | 2.2e-06 | Poly(A) polymerase predicted RNA binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 1896 |
| AciI | CCGC | 7 cut(s) | 29, 47, 50, 89, 741, 1499, 1652 |
| AclWI | GGATC | 3 cut(s) | 1596, 2007, 2020 |
| AcoI | YGGCCR | 1 cut(s) | 848 |
| AcsI | RAATTY | 4 cut(s) | 479, 633, 976, 1431 |
| AcuI | CTGAAG | 3 cut(s) | 182, 808, 1598 |
| AdeI | CACNNNGTG | 1 cut(s) | 1301 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1528 |
| AflIII | ACRYGT | 2 cut(s) | 1407, 1816 |
| AgsI | TTSAA | 8 cut(s) | 44, 146, 688, 878, 1066, 1112, 1223, 1824 |
| AjiI | CACGTC | 1 cut(s) | 707 |
| AjnI | CCWGG | 5 cut(s) | 331, 549, 1131, 1420, 1924 |
| AluBI | AGCT | 6 cut(s) | 149, 643, 781, 984, 1073, 1116 |
| AluI | AGCT | 6 cut(s) | 149, 643, 781, 984, 1073, 1116 |
| Alw21I | GWGCWC | 2 cut(s) | 28, 1297 |
| Alw26I | GTCTC | 1 cut(s) | 1564 |
| Alw44I | GTGCAC | 1 cut(s) | 1293 |
| AlwI | GGATC | 3 cut(s) | 1596, 2007, 2020 |
| Ama87I | CYCGRG | 1 cut(s) | 768 |
| AoxI | GGCC | 4 cut(s) | 92, 362, 848, 2124 |
| ApaLI | GTGCAC | 1 cut(s) | 1293 |
| ApeKI | GCWGC | 4 cut(s) | 615, 1148, 1525, 2042 |
| ApoI | RAATTY | 4 cut(s) | 479, 633, 976, 1431 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 380, 412 |
| AseI | ATTAAT | 1 cut(s) | 1398 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1341 |
| AspS9I | GGNCC | 4 cut(s) | 92, 329, 362, 907 |
| AsuC2I | CCSGG | 2 cut(s) | 769, 770 |
| AsuHPI | GGTGA | 9 cut(s) | 16, 64, 241, 445, 1346, 1618, 1784, 1952, 2047 |
| AsuII | TTCGAA | 1 cut(s) | 601 |
| AvaI | CYCGRG | 1 cut(s) | 768 |
| AvaII | GGWCC | 2 cut(s) | 329, 907 |
| BaeGI | GKGCMC | 1 cut(s) | 1297 |
| BalI | TGGCCA | 1 cut(s) | 850 |
| BamHI | GGATCC | 1 cut(s) | 2012 |
| BanII | GRGCYC | 1 cut(s) | 757 |
| BauI | CACGAG | 1 cut(s) | 924 |
| BbsI | GAAGAC | 2 cut(s) | 393, 552 |
| Bbv12I | GWGCWC | 2 cut(s) | 28, 1297 |
| BbvCI | CCTCAGC | 1 cut(s) | 1199 |
| BbvI | GCAGC | 4 cut(s) | 602, 1135, 1537, 2029 |
| BccI | CCATC | 9 cut(s) | 373, 418, 1260, 1420, 1478, 1513, 1532, 1589, 2047 |
| BceAI | ACGGC | 2 cut(s) | 1081, 1649 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 224, 258 |
| BciT130I | CCWGG | 5 cut(s) | 333, 551, 1133, 1422, 1926 |
| BciVI | GTATCC | 1 cut(s) | 248 |
| BclI | TGATCA | 1 cut(s) | 628 |
| BcnI | CCSGG | 2 cut(s) | 769, 770 |
| BcoDI | GTCTC | 1 cut(s) | 1564 |
| BfaI | CTAG | 7 cut(s) | 317, 519, 981, 1509, 1563, 1644, 1887 |
| BfmI | CTRYAG | 3 cut(s) | 310, 616, 2000 |
| BfuI | GTATCC | 1 cut(s) | 248 |
| BisI | GCNGC | 5 cut(s) | 48, 616, 1149, 1526, 2043 |
| BlsI | GCNGC | 5 cut(s) | 49, 617, 1150, 1527, 2044 |
| BmcAI | AGTACT | 2 cut(s) | 1003, 1807 |
| Bme1390I | CCNGG | 7 cut(s) | 333, 551, 769, 770, 1133, 1422, 1926 |
| Bme18I | GGWCC | 2 cut(s) | 329, 907 |
| BmeT110I | CYCGRG | 1 cut(s) | 768 |
| BmgBI | CACGTC | 1 cut(s) | 707 |
| BmgT120I | GGNCC | 4 cut(s) | 92, 329, 362, 907 |
| BmiI | GGNNCC | 6 cut(s) | 93, 307, 908, 909, 1782, 2014 |
| BmrFI | CCNGG | 7 cut(s) | 333, 551, 769, 770, 1133, 1422, 1926 |
| BmrI | ACTGGG | 1 cut(s) | 760 |
| BmsI | GCATC | 6 cut(s) | 268, 448, 671, 1267, 1834, 1973 |
| BmuI | ACTGGG | 1 cut(s) | 760 |
| BpiI | GAAGAC | 2 cut(s) | 393, 552 |
| BpmI | CTGGAG | 1 cut(s) | 1115 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1199 |
| Bpu14I | TTCGAA | 1 cut(s) | 601 |
| BpuEI | CTTGAG | 1 cut(s) | 268 |
| BpuMI | CCSGG | 2 cut(s) | 769, 770 |
| Bsa29I | ATCGAT | 2 cut(s) | 500, 585 |
| BsaAI | YACGTR | 1 cut(s) | 1408 |
| BsaJI | CCNNGG | 3 cut(s) | 768, 1421, 1924 |
| BsaWI | WCCGGW | 1 cut(s) | 930 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1633, 1663 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1528 |
| Bse1I | ACTGG | 4 cut(s) | 449, 733, 755, 1803 |
| BseBI | CCWGG | 5 cut(s) | 333, 551, 1133, 1422, 1926 |
| BseCI | ATCGAT | 2 cut(s) | 500, 585 |
| BseDI | CCNNGG | 3 cut(s) | 768, 1421, 1924 |
| BseGI | GGATG | 8 cut(s) | 283, 365, 889, 1245, 1252, 1431, 1988, 2058 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1528 |
| BseMII | CTCAG | 3 cut(s) | 691, 1190, 2097 |
| BseNI | ACTGG | 4 cut(s) | 449, 733, 755, 1803 |
| BseRI | GAGGAG | 1 cut(s) | 203 |
| BseSI | GKGCMC | 1 cut(s) | 1297 |
| BseXI | GCAGC | 4 cut(s) | 602, 1135, 1537, 2029 |
| BseYI | CCCAGC | 4 cut(s) | 149, 800, 1182, 1521 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1499 |
| BshFI | GGCC | 4 cut(s) | 94, 364, 850, 2126 |
| BshVI | ATCGAT | 2 cut(s) | 500, 585 |
| BsiEI | CGRYCG | 1 cut(s) | 1499 |
| BsiHKAI | GWGCWC | 2 cut(s) | 28, 1297 |
| BsiHKCI | CYCGRG | 1 cut(s) | 768 |
| BsiSI | CCGG | 2 cut(s) | 769, 931 |
| BslFI | GGGAC | 3 cut(s) | 855, 920, 1384 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1528 |
| BsmAI | GTCTC | 1 cut(s) | 1564 |
| BsmFI | GGGAC | 3 cut(s) | 855, 920, 1384 |
| BsmI | GAATGC | 1 cut(s) | 1390 |
| BsnI | GGCC | 4 cut(s) | 94, 364, 850, 2126 |
| BsoBI | CYCGRG | 1 cut(s) | 768 |
| Bsp119I | TTCGAA | 1 cut(s) | 601 |
| Bsp1286I | GDGCHC | 3 cut(s) | 28, 757, 1297 |
| Bsp1407I | TGTACA | 1 cut(s) | 668 |
| Bsp143I | GATC | 4 cut(s) | 262, 628, 1588, 2012 |
| BspACI | CCGC | 7 cut(s) | 29, 47, 50, 89, 741, 1499, 1652 |
| BspANI | GGCC | 4 cut(s) | 94, 364, 850, 2126 |
| BspCNI | CTCAG | 3 cut(s) | 690, 1191, 2096 |
| BspDI | ATCGAT | 2 cut(s) | 500, 585 |
| BspLI | GGNNCC | 6 cut(s) | 93, 307, 908, 909, 1782, 2014 |
| BspMAI | CTGCAG | 1 cut(s) | 620 |
| BspPI | GGATC | 3 cut(s) | 1596, 2007, 2020 |
| BspQI | GCTCTTC | 1 cut(s) | 762 |
| BspT104I | TTCGAA | 1 cut(s) | 601 |
| BsrGI | TGTACA | 1 cut(s) | 668 |
| BsrI | ACTGG | 4 cut(s) | 449, 733, 755, 1803 |
| BssECI | CCNNGG | 3 cut(s) | 768, 1421, 1924 |
| BssMI | GATC | 4 cut(s) | 262, 628, 1588, 2012 |
| BssSI | CACGAG | 1 cut(s) | 924 |
| Bst2BI | CACGAG | 1 cut(s) | 924 |
| Bst2UI | CCWGG | 5 cut(s) | 333, 551, 1133, 1422, 1926 |
| Bst4CI | ACNGT | 3 cut(s) | 598, 1248, 1375 |
| Bst6I | CTCTTC | 5 cut(s) | 45, 423, 762, 873, 1574 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 451, 1301, 1700 |
| BstAUI | TGTACA | 1 cut(s) | 668 |
| BstBAI | YACGTR | 1 cut(s) | 1408 |
| BstBI | TTCGAA | 1 cut(s) | 601 |
| BstC8I | GCNNGC | 5 cut(s) | 779, 806, 1170, 1530, 1696 |
| BstDEI | CTNAG | 4 cut(s) | 420, 677, 1199, 2083 |
| BstEII | GGTNACC | 1 cut(s) | 433 |
| BstF5I | GGATG | 8 cut(s) | 283, 365, 889, 1245, 1252, 1431, 1988, 2058 |
| BstKTI | GATC | 4 cut(s) | 265, 631, 1591, 2015 |
| BstMAI | GTCTC | 1 cut(s) | 1564 |
| BstMBI | GATC | 4 cut(s) | 262, 628, 1588, 2012 |
| BstMCI | CGRYCG | 1 cut(s) | 1499 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 208, 451, 1301, 1700 |
| BstNI | CCWGG | 5 cut(s) | 333, 551, 1133, 1422, 1926 |
| BstNSI | RCATGY | 3 cut(s) | 808, 1707, 1820 |
| BstPI | GGTNACC | 1 cut(s) | 433 |
| BstSCI | CCNGG | 7 cut(s) | 331, 549, 767, 768, 1131, 1420, 1924 |
| BstSFI | CTRYAG | 3 cut(s) | 310, 616, 2000 |
| BstSLI | GKGCMC | 1 cut(s) | 1297 |
| BstV1I | GCAGC | 4 cut(s) | 602, 1135, 1537, 2029 |
| BstV2I | GAAGAC | 2 cut(s) | 393, 552 |
| BstX2I | RGATCY | 2 cut(s) | 1588, 2012 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 808 |
| BstYI | RGATCY | 2 cut(s) | 1588, 2012 |
| Bsu15I | ATCGAT | 2 cut(s) | 500, 585 |
| BsuI | GTATCC | 1 cut(s) | 248 |
| BsuRI | GGCC | 4 cut(s) | 94, 364, 850, 2126 |
| BsuTUI | ATCGAT | 2 cut(s) | 500, 585 |
| BtrI | CACGTC | 1 cut(s) | 707 |
| BtsCI | GGATG | 8 cut(s) | 283, 365, 889, 1245, 1252, 1431, 1988, 2058 |
| BtsI | GCAGTG | 3 cut(s) | 845, 1705, 1912 |
| BtsIMutI | CAGTG | 5 cut(s) | 456, 845, 1253, 1705, 1912 |
| Cac8I | GCNNGC | 5 cut(s) | 779, 806, 1170, 1530, 1696 |
| Cfr13I | GGNCC | 4 cut(s) | 92, 329, 362, 907 |
| Cfr9I | CCCGGG | 1 cut(s) | 768 |
| ClaI | ATCGAT | 2 cut(s) | 500, 585 |
| DdeI | CTNAG | 4 cut(s) | 420, 677, 1199, 2083 |
| DpnI | GATC | 4 cut(s) | 264, 630, 1590, 2014 |
| DpnII | GATC | 4 cut(s) | 262, 628, 1588, 2012 |
| DraIII | CACNNNGTG | 1 cut(s) | 1301 |
| EaeI | YGGCCR | 1 cut(s) | 848 |
| Eam1104I | CTCTTC | 5 cut(s) | 45, 423, 762, 873, 1574 |
| EarI | CTCTTC | 5 cut(s) | 45, 423, 762, 873, 1574 |
| EciI | GGCGGA | 2 cut(s) | 756, 1641 |
| Eco24I | GRGCYC | 1 cut(s) | 757 |
| Eco32I | GATATC | 2 cut(s) | 583, 920 |
| Eco47I | GGWCC | 2 cut(s) | 329, 907 |
| Eco57I | CTGAAG | 3 cut(s) | 182, 808, 1598 |
| Eco88I | CYCGRG | 1 cut(s) | 768 |
| Eco91I | GGTNACC | 1 cut(s) | 433 |
| EcoO109I | RGGNCCY | 2 cut(s) | 92, 907 |
| EcoO65I | GGTNACC | 1 cut(s) | 433 |
| EcoRI | GAATTC | 1 cut(s) | 976 |
| EcoRII | CCWGG | 5 cut(s) | 331, 549, 1131, 1420, 1924 |
| EcoRV | GATATC | 2 cut(s) | 583, 920 |
| EcoT22I | ATGCAT | 1 cut(s) | 1988 |
| EcoT38I | GRGCYC | 1 cut(s) | 757 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 138, 170 |
| FaqI | GGGAC | 3 cut(s) | 855, 920, 1384 |
| FauI | CCCGC | 1 cut(s) | 82 |
| FauNDI | CATATG | 1 cut(s) | 942 |
| FbaI | TGATCA | 1 cut(s) | 628 |
| FblI | GTMKAC | 1 cut(s) | 1896 |
| Fnu4HI | GCNGC | 5 cut(s) | 48, 616, 1149, 1526, 2043 |
| FokI | GGATG | 8 cut(s) | 290, 352, 896, 1239, 1252, 1438, 1995, 2065 |
| FriOI | GRGCYC | 1 cut(s) | 757 |
| Fsp4HI | GCNGC | 5 cut(s) | 48, 616, 1149, 1526, 2043 |
| FspBI | CTAG | 7 cut(s) | 317, 519, 981, 1509, 1563, 1644, 1887 |
| GluI | GCNGC | 5 cut(s) | 48, 616, 1149, 1526, 2043 |
| GsaI | CCCAGC | 4 cut(s) | 153, 804, 1186, 1525 |
| GsuI | CTGGAG | 1 cut(s) | 1115 |
| HaeIII | GGCC | 4 cut(s) | 94, 364, 850, 2126 |
| HapII | CCGG | 2 cut(s) | 769, 931 |
| HincII | GTYRAC | 2 cut(s) | 1138, 1897 |
| HindII | GTYRAC | 2 cut(s) | 1138, 1897 |
| HindIII | AAGCTT | 1 cut(s) | 641 |
| HinfI | GANTC | 7 cut(s) | 819, 934, 1190, 1609, 1661, 1748, 1958 |
| HpaII | CCGG | 2 cut(s) | 769, 931 |
| HphI | GGTGA | 9 cut(s) | 16, 64, 241, 445, 1346, 1618, 1784, 1952, 2047 |
| Hpy166II | GTNNAC | 8 cut(s) | 748, 1138, 1295, 1477, 1493, 1897, 2038, 2080 |
| Hpy188I | TCNGA | 7 cut(s) | 13, 114, 562, 680, 1720, 1975, 2086 |
| Hpy188III | TCNNGA | 7 cut(s) | 380, 816, 926, 1509, 1592, 1613, 1709 |
| Hpy8I | GTNNAC | 8 cut(s) | 748, 1138, 1295, 1477, 1493, 1897, 2038, 2080 |
| Hpy99I | CGWCG | 2 cut(s) | 1898, 1901 |
| HpyAV | CCTTC | 5 cut(s) | 1449, 1579, 1725, 1871, 2026 |
| HpyCH4III | ACNGT | 3 cut(s) | 598, 1248, 1375 |
| HpyCH4IV | ACGT | 3 cut(s) | 706, 1407, 1893 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 208, 451, 1301, 1700 |
| HpyF3I | CTNAG | 4 cut(s) | 420, 677, 1199, 2083 |
| HpySE526I | ACGT | 3 cut(s) | 706, 1407, 1893 |
| KflI | GGGWCCC | 1 cut(s) | 907 |
| Ksp22I | TGATCA | 1 cut(s) | 628 |
| Kzo9I | GATC | 4 cut(s) | 262, 628, 1588, 2012 |
| LguI | GCTCTTC | 1 cut(s) | 762 |
| LmnI | GCTCC | 3 cut(s) | 31, 311, 1780 |
| Lsp1109I | GCAGC | 4 cut(s) | 602, 1135, 1537, 2029 |
| LweI | GCATC | 6 cut(s) | 268, 448, 671, 1267, 1834, 1973 |
| MaeI | CTAG | 7 cut(s) | 317, 519, 981, 1509, 1563, 1644, 1887 |
| MaeII | ACGT | 3 cut(s) | 706, 1407, 1893 |
| MaeIII | GTNAC | 8 cut(s) | 67, 433, 724, 926, 1031, 1242, 1685, 1916 |
| MalI | GATC | 4 cut(s) | 264, 630, 1590, 2014 |
| MboI | GATC | 4 cut(s) | 262, 628, 1588, 2012 |
| MflI | RGATCY | 2 cut(s) | 1588, 2012 |
| MhlI | GDGCHC | 3 cut(s) | 28, 757, 1297 |
| MlsI | TGGCCA | 1 cut(s) | 850 |
| MluCI | AATT | 9 cut(s) | 479, 633, 948, 976, 1061, 1431, 1677, 1798, 2062 |
| MluNI | TGGCCA | 1 cut(s) | 850 |
| MlyI | GAGTC | 3 cut(s) | 928, 1757, 1952 |
| MmeI | TCCRAC | 1 cut(s) | 108 |
| Mox20I | TGGCCA | 1 cut(s) | 850 |
| Mph1103I | ATGCAT | 1 cut(s) | 1988 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1341 |
| MscI | TGGCCA | 1 cut(s) | 850 |
| MseI | TTAA | 3 cut(s) | 483, 609, 1398 |
| MslI | CAYNNNNRTG | 2 cut(s) | 679, 1400 |
| Msp20I | TGGCCA | 1 cut(s) | 850 |
| MspA1I | CMGCKG | 1 cut(s) | 31 |
| MspI | CCGG | 2 cut(s) | 769, 931 |
| MspR9I | CCNGG | 7 cut(s) | 333, 551, 769, 770, 1133, 1422, 1926 |
| Mva1269I | GAATGC | 1 cut(s) | 1390 |
| MvaI | CCWGG | 5 cut(s) | 333, 551, 1133, 1422, 1926 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 208, 451, 1301, 1700 |
| NciI | CCSGG | 2 cut(s) | 769, 770 |
| NdeI | CATATG | 1 cut(s) | 942 |
| NdeII | GATC | 4 cut(s) | 262, 628, 1588, 2012 |
| NlaIV | GGNNCC | 6 cut(s) | 93, 307, 908, 909, 1782, 2014 |
| NmeAIII | GCCGAG | 2 cut(s) | 870, 1174 |
| NmuCI | GTSAC | 4 cut(s) | 67, 433, 926, 1685 |
| NsiI | ATGCAT | 1 cut(s) | 1988 |
| NspI | RCATGY | 3 cut(s) | 808, 1707, 1820 |
| NspV | TTCGAA | 1 cut(s) | 601 |
| PaeI | GCATGC | 1 cut(s) | 808 |
| PciI | ACATGT | 1 cut(s) | 1816 |
| PciSI | GCTCTTC | 1 cut(s) | 762 |
| PctI | GAATGC | 1 cut(s) | 1390 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1341 |
| PfeI | GAWTC | 4 cut(s) | 819, 1190, 1609, 1661 |
| PkrI | GCNGC | 5 cut(s) | 49, 617, 1150, 1527, 2044 |
| PleI | GAGTC | 3 cut(s) | 928, 1756, 1952 |
| PpsI | GAGTC | 3 cut(s) | 928, 1756, 1952 |
| Ppu21I | YACGTR | 1 cut(s) | 1408 |
| PpuMI | RGGWCCY | 1 cut(s) | 907 |
| PscI | ACATGT | 1 cut(s) | 1816 |
| PshBI | ATTAAT | 1 cut(s) | 1398 |
| Psp5II | RGGWCCY | 1 cut(s) | 907 |
| Psp6I | CCWGG | 5 cut(s) | 331, 549, 1131, 1420, 1924 |
| PspEI | GGTNACC | 1 cut(s) | 433 |
| PspFI | CCCAGC | 4 cut(s) | 149, 800, 1182, 1521 |
| PspGI | CCWGG | 5 cut(s) | 331, 549, 1131, 1420, 1924 |
| PspN4I | GGNNCC | 6 cut(s) | 93, 307, 908, 909, 1782, 2014 |
| PspPI | GGNCC | 4 cut(s) | 92, 329, 362, 907 |
| PspPPI | RGGWCCY | 1 cut(s) | 907 |
| PstI | CTGCAG | 1 cut(s) | 620 |
| PsuI | RGATCY | 2 cut(s) | 1588, 2012 |
| RseI | CAYNNNNRTG | 2 cut(s) | 679, 1400 |
| SalI | GTCGAC | 1 cut(s) | 1895 |
| SapI | GCTCTTC | 1 cut(s) | 762 |
| SaqAI | TTAA | 3 cut(s) | 483, 609, 1398 |
| SatI | GCNGC | 5 cut(s) | 48, 616, 1149, 1526, 2043 |
| Sau3AI | GATC | 4 cut(s) | 262, 628, 1588, 2012 |
| Sau96I | GGNCC | 4 cut(s) | 92, 329, 362, 907 |
| ScaI | AGTACT | 2 cut(s) | 1003, 1807 |
| SchI | GAGTC | 3 cut(s) | 928, 1757, 1952 |
| ScrFI | CCNGG | 7 cut(s) | 333, 551, 769, 770, 1133, 1422, 1926 |
| SduI | GDGCHC | 3 cut(s) | 28, 757, 1297 |
| SfaNI | GCATC | 6 cut(s) | 268, 448, 671, 1267, 1834, 1973 |
| SfcI | CTRYAG | 3 cut(s) | 310, 616, 2000 |
| SfuI | TTCGAA | 1 cut(s) | 601 |
| SgrDI | CGTCGACG | 1 cut(s) | 1895 |
| SinI | GGWCC | 2 cut(s) | 329, 907 |
| SmaI | CCCGGG | 1 cut(s) | 770 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 679, 1400 |
| SmlI | CTYRAG | 1 cut(s) | 247 |
| SmoI | CTYRAG | 1 cut(s) | 247 |
| SphI | GCATGC | 1 cut(s) | 808 |
| Sse9I | AATT | 9 cut(s) | 479, 633, 948, 976, 1061, 1431, 1677, 1798, 2062 |
| SsiI | CCGC | 7 cut(s) | 29, 47, 50, 89, 741, 1499, 1652 |
| SspMI | CTAG | 7 cut(s) | 317, 519, 981, 1509, 1563, 1644, 1887 |
| StyD4I | CCNGG | 7 cut(s) | 331, 549, 767, 768, 1131, 1420, 1924 |
| TaaI | ACNGT | 3 cut(s) | 598, 1248, 1375 |
| TaiI | ACGT | 3 cut(s) | 709, 1410, 1896 |
| TaqI | TCGA | 9 cut(s) | 83, 105, 379, 500, 585, 601, 817, 1020, 1896 |
| TaqII | GACCGA | 1 cut(s) | 452 |
| TasI | AATT | 9 cut(s) | 479, 633, 948, 976, 1061, 1431, 1677, 1798, 2062 |
| TatI | WGTACW | 3 cut(s) | 668, 1001, 1805 |
| TauI | GCSGC | 1 cut(s) | 50 |
| TfiI | GAWTC | 4 cut(s) | 819, 1190, 1609, 1661 |
| Tru1I | TTAA | 3 cut(s) | 483, 609, 1398 |
| Tru9I | TTAA | 3 cut(s) | 483, 609, 1398 |
| TscAI | CASTG | 5 cut(s) | 456, 845, 1253, 1705, 1912 |
| TseFI | GTSAC | 4 cut(s) | 67, 433, 926, 1685 |
| TseI | GCWGC | 4 cut(s) | 615, 1148, 1525, 2042 |
| Tsp45I | GTSAC | 4 cut(s) | 67, 433, 926, 1685 |
| TspDTI | ATGAA | 3 cut(s) | 491, 900, 989 |
| TspGWI | ACGGA | 4 cut(s) | 78, 507, 1050, 1914 |
| TspMI | CCCGGG | 1 cut(s) | 768 |
| TspRI | CASTG | 5 cut(s) | 456, 845, 1253, 1705, 1912 |
| VneI | GTGCAC | 1 cut(s) | 1293 |
| VpaK11BI | GGWCC | 2 cut(s) | 329, 907 |
| VspI | ATTAAT | 1 cut(s) | 1398 |
| XapI | RAATTY | 4 cut(s) | 479, 633, 976, 1431 |
| XbaI | TCTAGA | 1 cut(s) | 1508 |
| XceI | RCATGY | 3 cut(s) | 808, 1707, 1820 |
| XmaI | CCCGGG | 1 cut(s) | 768 |
| XmiI | GTMKAC | 1 cut(s) | 1896 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1341 |
| XspI | CTAG | 7 cut(s) | 317, 519, 981, 1509, 1563, 1644, 1887 |
| ZrmI | AGTACT | 2 cut(s) | 1003, 1807 |
| Zsp2I | ATGCAT | 1 cut(s) | 1988 |