Rmu_co8193342.1_g000001

Poly(A) polymerase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8193342.1
Physical Location & Seq
Forward (+)
22 .. 507
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8193342.1_g000001.1.cds

Sequence Viewer

Length: 387 bp
atgtgtgcttctgaattccctacggtccagaagccttcagaagagggtaaggagttggtacatccgtctgcaatatctttctcggaatccaaggaaacatgccagattgaaataaatggggacagagttggaaatgtggttttggtggacgggaagaatatggagactgactctactggtagtgtgctgaattggacagaaggtgctattgatgttgaccaagaattagtcaaaccatgcagtcagactatgggggtggagaatgctgaaggtgtattaaaatcaacttccagcaatcggaacctcaattgcgaggatgatttactttcatcaggagcacagttccttcggaaaagtggcactggaaatctgcacggcgtactataa

Protein Analysis

128

Amino Acids

13.67

Weight (kDa)

4.5

Isoelectric Point (pI)

23.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000312)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850 AT4G32850
fragaria_vesca FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_2g35240 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471 FvH4_6g32471
malus_domestica MD08G1110400.v1.1 MD09G1202000.v1.1 MD09G1202100.v1.1 MD17G1182800.v1.1
prunus_persica Prupe.1G444600_v2.0.a1 Prupe.3G057600_v2.0.a1 Prupe.3G057600_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1 Prupe.3G057700_v2.0.a1
pyrus_communis pycom08g09190 pycom09g11890 pycom15g08420 pycom17g19200
rosa_chinensis RchiOBHm_Chr2g0140721 RchiOBHm_Chr2g0140741 RchiOBHm_Chr2g0140761 RchiOBHm_Chr6g0306691
rosa_laevigata RLG00000010773 RLG00000019895 RLG00000019896
rosa_multiflora Rmu_co8193342.1_g000001 Rmu_sc0003342.1_g000015 Rmu_sc0003342.1_g000021 Rmu_sc0003342.1_g000026 Rmu_sc0005201.1_g000002 Rmu_sc0017785.1_g000009
rosa_roxburghii Rroxscaffold_2G00104510 Rroxscaffold_2G00104540 Rroxscaffold_7G00161540
rosa_rugosa Rorug02G0364600 Rorug02G0364700 Rorug02G0364800 Rorug02G0364900 Rorug02G0365000 Rorug06G0351600 Rorug06G0351700
rosa_samantha Rh2AG416100 Rh2AG416200 Rh2AG416300 Rh2BG425700 Rh2BG425800 Rh2BG425900 Rh2CG402300 Rh2CG402400 Rh2CG402500 Rh2DG435600 Rh2DG435700 Rh2DG435800 Rh6AG464000 Rh6BG437000 Rh6CG478100 Rh6DG464900
rosa_wichuraiana Rw2G034050 Rw2G034060 Rw6G040420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 14
AcuI CTGAAG 2 cut(s) 21, 288
AfaI GTAC 2 cut(s) 60, 381
AfiI CCNNNNNNNGG 1 cut(s) 297
AgsI TTSAA 1 cut(s) 110
Alw21I GWGCWC 1 cut(s) 340
Alw26I GTCTC 1 cut(s) 158
ApoI RAATTY 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 25
AvaII GGWCC 1 cut(s) 25
BaeI ACNNNNGTAYC 2 cut(s) 50, 83
Bbv12I GWGCWC 1 cut(s) 340
BcoDI GTCTC 1 cut(s) 158
Bme18I GGWCC 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 1 cut(s) 302
BplI GAGNNNNNCTC 2 cut(s) 155, 187
BsaJI CCNNGG 1 cut(s) 90
Bsc4I CCNNNNNNNGG 1 cut(s) 297
Bse1I ACTGG 2 cut(s) 181, 367
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 2 cut(s) 61, 322
BseLI CCNNNNNNNGG 1 cut(s) 297
BseNI ACTGG 2 cut(s) 181, 367
BsgI GTGCAG 1 cut(s) 356
BsiHKAI GWGCWC 1 cut(s) 340
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 297
BsmAI GTCTC 1 cut(s) 158
BsmFI GGGAC 1 cut(s) 134
BsmI GAATGC 1 cut(s) 268
Bsp1286I GDGCHC 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 302
BsrI ACTGG 2 cut(s) 181, 367
BssECI CCNNGG 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 90
Bst4CI ACNGT 2 cut(s) 25, 342
Bst6I CTCTTC 1 cut(s) 36
BstF5I GGATG 2 cut(s) 61, 322
BstMAI GTCTC 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 102
BtsCI GGATG 2 cut(s) 61, 322
BtsIMutI CAGTG 1 cut(s) 360
Cfr13I GGNCC 1 cut(s) 25
Csp6I GTAC 2 cut(s) 59, 380
CviAII CATG 2 cut(s) 99, 237
CviJI RGCY 1 cut(s) 34
CviKI_1 RGCY 1 cut(s) 34
CviQI GTAC 2 cut(s) 59, 380
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 25
Eco57I CTGAAG 2 cut(s) 21, 288
EcoRI GAATTC 1 cut(s) 14
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 2 cut(s) 102, 240
FaiI YATR 5 cut(s) 100, 161, 238, 251, 385
FaqI GGGAC 1 cut(s) 134
FatI CATG 2 cut(s) 98, 236
FokI GGATG 2 cut(s) 48, 329
Hin1II CATG 2 cut(s) 102, 240
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 2 cut(s) 86, 170
Hpy166II GTNNAC 2 cut(s) 148, 217
Hpy188I TCNGA 6 cut(s) 13, 40, 85, 246, 300, 351
Hpy188III TCNNGA 2 cut(s) 28, 333
Hpy8I GTNNAC 2 cut(s) 148, 217
HpyAV CCTTC 4 cut(s) 45, 194, 263, 356
HpyCH4III ACNGT 2 cut(s) 25, 342
HpyCH4V TGCA 3 cut(s) 71, 240, 373
Hsp92II CATG 2 cut(s) 102, 240
LmnI GCTCC 1 cut(s) 335
LpnPI CCDG 6 cut(s) 41, 116, 162, 304, 318, 348
MboII GAAGA 2 cut(s) 53, 166
MfeI CAATTG 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 340
MluCI AATT 4 cut(s) 14, 190, 224, 307
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 3 cut(s) 37, 307, 314
MseI TTAA 1 cut(s) 278
MunI CAATTG 1 cut(s) 307
Mva1269I GAATGC 1 cut(s) 268
NlaIII CATG 2 cut(s) 102, 240
NlaIV GGNNCC 1 cut(s) 302
NspI RCATGY 1 cut(s) 102
PctI GAATGC 1 cut(s) 268
PfeI GAWTC 1 cut(s) 86
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 302
PspPI GGNCC 1 cut(s) 25
RsaI GTAC 2 cut(s) 60, 381
RsaNI GTAC 2 cut(s) 59, 380
SaqAI TTAA 1 cut(s) 278
Sau96I GGNCC 1 cut(s) 25
SchI GAGTC 1 cut(s) 164
SduI GDGCHC 1 cut(s) 340
SetI ASST 3 cut(s) 205, 274, 306
SinI GGWCC 1 cut(s) 25
Sse9I AATT 4 cut(s) 14, 190, 224, 307
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 2 cut(s) 25, 342
TasI AATT 4 cut(s) 14, 190, 224, 307
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TscAI CASTG 1 cut(s) 367
TspDTI ATGAA 1 cut(s) 318
TspGWI ACGGA 1 cut(s) 54
TspRI CASTG 1 cut(s) 367
VpaK11BI GGWCC 1 cut(s) 25
XapI RAATTY 1 cut(s) 14
XceI RCATGY 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.