Poly(A) polymerase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PAP_NTPase | PF20750 | 25 - 160 | 4.3e-41 | Poly(A) polymerase nucleotidyltransferase domain |
| NTP_transf_2 | PF01909 | 92 - 152 | 2.9e-08 | Nucleotidyltransferase domain |
| PAP_NTPase | PF20750 | 161 - 194 | 3.9e-11 | Poly(A) polymerase nucleotidyltransferase domain |
| PAP_central | PF04928 | 199 - 343 | 6.7e-69 | Poly(A) polymerase central domain |
| PAP_RNA-bind | PF04926 | 347 - 405 | 2.1e-13 | Poly(A) polymerase predicted RNA binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1057 |
| Acc16I | TGCGCA | 1 cut(s) | 1230 |
| Acc36I | ACCTGC | 2 cut(s) | 1057, 1610 |
| Acc65I | GGTACC | 2 cut(s) | 1724, 1732 |
| AccB1I | GGYRCC | 2 cut(s) | 1724, 1732 |
| AccI | GTMKAC | 2 cut(s) | 1205, 1678 |
| AccII | CGCG | 3 cut(s) | 642, 1305, 1438 |
| AciI | CCGC | 7 cut(s) | 5, 59, 601, 642, 1305, 1438, 1762 |
| AclWI | GGATC | 4 cut(s) | 322, 836, 849, 870 |
| AcoI | YGGCCR | 1 cut(s) | 782 |
| AcsI | RAATTY | 2 cut(s) | 567, 1808 |
| AcuI | CTGAAG | 5 cut(s) | 1019, 1163, 1636, 1815, 2082 |
| AdeI | CACNNNGTG | 1 cut(s) | 774 |
| AfaI | GTAC | 6 cut(s) | 767, 795, 937, 1726, 1734, 1854 |
| AfeI | AGCGCT | 1 cut(s) | 1018 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 484, 1688, 2091 |
| AflII | CTTAAG | 1 cut(s) | 572 |
| AflIII | ACRYGT | 1 cut(s) | 943 |
| AgsI | TTSAA | 8 cut(s) | 455, 622, 807, 1028, 1150, 1502, 1751, 1904 |
| AjnI | CCWGG | 1 cut(s) | 340 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 189, 221 |
| AleI | CACNNNNGTG | 1 cut(s) | 613 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1627, 1659 |
| AluBI | AGCT | 8 cut(s) | 347, 577, 715, 997, 1141, 1399, 1650, 1793 |
| AluI | AGCT | 8 cut(s) | 347, 577, 715, 997, 1141, 1399, 1650, 1793 |
| Alw21I | GWGCWC | 1 cut(s) | 597 |
| Alw26I | GTCTC | 4 cut(s) | 41, 931, 1155, 1952 |
| AlwI | GGATC | 4 cut(s) | 322, 836, 849, 870 |
| Ama87I | CYCGRG | 1 cut(s) | 137 |
| Aor51HI | AGCGCT | 1 cut(s) | 1018 |
| AoxI | GGCC | 6 cut(s) | 6, 101, 338, 782, 1493, 1547 |
| ApeKI | GCWGC | 4 cut(s) | 185, 210, 1082, 1396 |
| ApoI | RAATTY | 2 cut(s) | 567, 1808 |
| AseI | ATTAAT | 1 cut(s) | 1524 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 201 |
| Asp718I | GGTACC | 2 cut(s) | 1724, 1732 |
| AspLEI | GCGC | 3 cut(s) | 642, 1019, 1231 |
| AspS9I | GGNCC | 6 cut(s) | 101, 331, 338, 371, 1493, 1819 |
| AsuC2I | CCSGG | 1 cut(s) | 100 |
| AsuHPI | GGTGA | 4 cut(s) | 250, 454, 1135, 2122 |
| AsuII | TTCGAA | 1 cut(s) | 535 |
| AvaI | CYCGRG | 1 cut(s) | 137 |
| AvaII | GGWCC | 3 cut(s) | 331, 371, 1819 |
| AxyI | CCTNAGG | 1 cut(s) | 858 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 1716, 1716, 1749, 1749, 1844, 1877 |
| BalI | TGGCCA | 1 cut(s) | 784 |
| BamHI | GGATCC | 1 cut(s) | 841 |
| BanI | GGYRCC | 2 cut(s) | 1724, 1732 |
| BauI | CACGAG | 1 cut(s) | 1543 |
| BbsI | GAAGAC | 2 cut(s) | 27, 1405 |
| Bbv12I | GWGCWC | 1 cut(s) | 597 |
| BbvI | GCAGC | 4 cut(s) | 172, 197, 1094, 1408 |
| BccI | CCATC | 6 cut(s) | 271, 382, 1194, 1415, 1585, 1778 |
| BceAI | ACGGC | 2 cut(s) | 88, 88 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 98, 132, 515, 549 |
| BciT130I | CCWGG | 1 cut(s) | 342 |
| BciVI | GTATCC | 1 cut(s) | 1612 |
| BcnI | CCSGG | 1 cut(s) | 100 |
| BcoDI | GTCTC | 4 cut(s) | 41, 931, 1155, 1952 |
| BfaI | CTAG | 4 cut(s) | 735, 915, 1559, 1647 |
| BfmI | CTRYAG | 1 cut(s) | 1064 |
| BfoI | RGCGCY | 1 cut(s) | 1020 |
| BfrI | CTTAAG | 1 cut(s) | 572 |
| BfuAI | ACCTGC | 2 cut(s) | 1057, 1610 |
| BfuI | GTATCC | 1 cut(s) | 1612 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 261 |
| BglII | AGATCT | 1 cut(s) | 481 |
| BisI | GCNGC | 7 cut(s) | 6, 59, 186, 211, 1083, 1397, 1763 |
| BlsI | GCNGC | 7 cut(s) | 7, 60, 187, 212, 1084, 1398, 1764 |
| BmcAI | AGTACT | 1 cut(s) | 937 |
| Bme1390I | CCNGG | 2 cut(s) | 100, 342 |
| Bme18I | GGWCC | 3 cut(s) | 331, 371, 1819 |
| BmeT110I | CYCGRG | 1 cut(s) | 137 |
| BmgT120I | GGNCC | 6 cut(s) | 101, 331, 338, 371, 1493, 1819 |
| BmiI | GGNNCC | 5 cut(s) | 332, 843, 1726, 1734, 2096 |
| BmrFI | CCNGG | 2 cut(s) | 100, 342 |
| BmrI | ACTGGG | 1 cut(s) | 244 |
| BmsI | GCATC | 6 cut(s) | 84, 277, 457, 1078, 1201, 1223 |
| BmuI | ACTGGG | 1 cut(s) | 244 |
| BpiI | GAAGAC | 2 cut(s) | 27, 1405 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1949, 1981 |
| BpmI | CTGGAG | 2 cut(s) | 363, 1707 |
| Bpu14I | TTCGAA | 1 cut(s) | 535 |
| BpuMI | CCSGG | 1 cut(s) | 100 |
| BsaAI | YACGTR | 1 cut(s) | 944 |
| BsaJI | CCNNGG | 5 cut(s) | 62, 334, 967, 1728, 1884 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 484, 1688, 2091 |
| Bse1I | ACTGG | 5 cut(s) | 239, 667, 1009, 1690, 1975 |
| Bse21I | CCTNAGG | 1 cut(s) | 858 |
| Bse3DI | GCAATG | 1 cut(s) | 520 |
| BseBI | CCWGG | 1 cut(s) | 342 |
| BseDI | CCNNGG | 5 cut(s) | 62, 334, 967, 1728, 1884 |
| BseGI | GGATG | 6 cut(s) | 292, 420, 1186, 1214, 1596, 1855 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 484, 1688, 2091 |
| BseMI | GCAATG | 1 cut(s) | 520 |
| BseMII | CTCAG | 6 cut(s) | 36, 507, 625, 785, 872, 942 |
| BseNI | ACTGG | 5 cut(s) | 239, 667, 1009, 1690, 1975 |
| BseRI | GAGGAG | 3 cut(s) | 79, 407, 1001 |
| BseXI | GCAGC | 4 cut(s) | 172, 197, 1094, 1408 |
| Bsh1236I | CGCG | 3 cut(s) | 642, 1305, 1438 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1436 |
| BshFI | GGCC | 6 cut(s) | 8, 103, 340, 784, 1495, 1549 |
| BshNI | GGYRCC | 2 cut(s) | 1724, 1732 |
| BsiEI | CGRYCG | 1 cut(s) | 1436 |
| BsiHKAI | GWGCWC | 1 cut(s) | 597 |
| BsiHKCI | CYCGRG | 1 cut(s) | 137 |
| BsiSI | CCGG | 2 cut(s) | 99, 1390 |
| BslFI | GGGAC | 2 cut(s) | 461, 1928 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 484, 1688, 2091 |
| BsmAI | GTCTC | 4 cut(s) | 41, 931, 1155, 1952 |
| BsmFI | GGGAC | 2 cut(s) | 461, 1928 |
| BsmI | GAATGC | 2 cut(s) | 1179, 2062 |
| BsnI | GGCC | 6 cut(s) | 8, 103, 340, 784, 1495, 1549 |
| BsoBI | CYCGRG | 1 cut(s) | 137 |
| Bsp119I | TTCGAA | 1 cut(s) | 535 |
| Bsp1286I | GDGCHC | 1 cut(s) | 597 |
| Bsp1407I | TGTACA | 1 cut(s) | 765 |
| Bsp143I | GATC | 7 cut(s) | 115, 271, 314, 481, 562, 841, 862 |
| Bsp19I | CCATGG | 3 cut(s) | 334, 967, 1728 |
| BspACI | CCGC | 7 cut(s) | 5, 59, 601, 642, 1305, 1438, 1762 |
| BspANI | GGCC | 6 cut(s) | 8, 103, 340, 784, 1495, 1549 |
| BspCNI | CTCAG | 7 cut(s) | 4, 37, 506, 624, 784, 871, 941 |
| BspFNI | CGCG | 3 cut(s) | 642, 1305, 1438 |
| BspLI | GGNNCC | 5 cut(s) | 332, 843, 1726, 1734, 2096 |
| BspMAI | CTGCAG | 1 cut(s) | 1068 |
| BspMI | ACCTGC | 2 cut(s) | 1057, 1610 |
| BspPI | GGATC | 4 cut(s) | 322, 836, 849, 870 |
| BspT104I | TTCGAA | 1 cut(s) | 535 |
| BspT107I | GGYRCC | 2 cut(s) | 1724, 1732 |
| BspTI | CTTAAG | 1 cut(s) | 572 |
| BsrDI | GCAATG | 1 cut(s) | 520 |
| BsrGI | TGTACA | 1 cut(s) | 765 |
| BsrI | ACTGG | 5 cut(s) | 239, 667, 1009, 1690, 1975 |
| BssECI | CCNNGG | 5 cut(s) | 62, 334, 967, 1728, 1884 |
| BssMI | GATC | 7 cut(s) | 115, 271, 314, 481, 562, 841, 862 |
| BssNAI | GTATAC | 1 cut(s) | 1206 |
| BssSI | CACGAG | 1 cut(s) | 1543 |
| BssT1I | CCWWGG | 4 cut(s) | 334, 967, 1728, 1884 |
| Bst1107I | GTATAC | 1 cut(s) | 1206 |
| Bst2BI | CACGAG | 1 cut(s) | 1543 |
| Bst2UI | CCWGG | 1 cut(s) | 342 |
| Bst4CI | ACNGT | 4 cut(s) | 532, 1312, 1434, 1819 |
| Bst6I | CTCTTC | 4 cut(s) | 192, 432, 807, 1830 |
| BstAFI | CTTAAG | 1 cut(s) | 572 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1088 |
| BstAUI | TGTACA | 1 cut(s) | 765 |
| BstBAI | YACGTR | 1 cut(s) | 944 |
| BstBI | TTCGAA | 1 cut(s) | 535 |
| BstC8I | GCNNGC | 1 cut(s) | 1460 |
| BstDEI | CTNAG | 8 cut(s) | 12, 45, 493, 611, 771, 858, 928, 1133 |
| BstDSI | CCRYGG | 3 cut(s) | 334, 967, 1728 |
| BstEII | GGTNACC | 1 cut(s) | 828 |
| BstF5I | GGATG | 6 cut(s) | 292, 420, 1186, 1214, 1596, 1855 |
| BstFNI | CGCG | 3 cut(s) | 642, 1305, 1438 |
| BstH2I | RGCGCY | 1 cut(s) | 1020 |
| BstHHI | GCGC | 3 cut(s) | 642, 1019, 1231 |
| BstKTI | GATC | 7 cut(s) | 118, 274, 317, 484, 565, 844, 865 |
| BstMAI | GTCTC | 4 cut(s) | 41, 931, 1155, 1952 |
| BstMBI | GATC | 7 cut(s) | 115, 271, 314, 481, 562, 841, 862 |
| BstMCI | CGRYCG | 1 cut(s) | 1436 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 261, 639, 1014, 1088, 1138, 1228, 1235, 1799 |
| BstNI | CCWGG | 1 cut(s) | 342 |
| BstNSI | RCATGY | 3 cut(s) | 1372, 1376, 1896 |
| BstPI | GGTNACC | 1 cut(s) | 828 |
| BstSCI | CCNGG | 2 cut(s) | 98, 340 |
| BstSFI | CTRYAG | 1 cut(s) | 1064 |
| BstUI | CGCG | 3 cut(s) | 642, 1305, 1438 |
| BstV1I | GCAGC | 4 cut(s) | 172, 197, 1094, 1408 |
| BstV2I | GAAGAC | 2 cut(s) | 27, 1405 |
| BstX2I | RGATCY | 2 cut(s) | 481, 841 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 341 |
| BstYI | RGATCY | 2 cut(s) | 481, 841 |
| BstZ17I | GTATAC | 1 cut(s) | 1206 |
| Bsu36I | CCTNAGG | 1 cut(s) | 858 |
| BsuI | GTATCC | 1 cut(s) | 1612 |
| BsuRI | GGCC | 6 cut(s) | 8, 103, 340, 784, 1495, 1549 |
| BtgI | CCRYGG | 3 cut(s) | 334, 967, 1728 |
| BtgZI | GCGATG | 1 cut(s) | 1756 |
| BtsCI | GGATG | 6 cut(s) | 292, 420, 1186, 1214, 1596, 1855 |
| BtsIMutI | CAGTG | 3 cut(s) | 779, 1016, 1187 |
| BveI | ACCTGC | 2 cut(s) | 1057, 1610 |
| Cac8I | GCNNGC | 1 cut(s) | 1460 |
| CfoI | GCGC | 3 cut(s) | 642, 1019, 1231 |
| Cfr13I | GGNCC | 6 cut(s) | 101, 331, 338, 371, 1493, 1819 |
| Csp6I | GTAC | 6 cut(s) | 766, 794, 936, 1725, 1733, 1853 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1681, 1716 |
| CviQI | GTAC | 6 cut(s) | 766, 794, 936, 1725, 1733, 1853 |
| DdeI | CTNAG | 8 cut(s) | 12, 45, 493, 611, 771, 858, 928, 1133 |
| DpnI | GATC | 7 cut(s) | 117, 273, 316, 483, 564, 843, 864 |
| DpnII | GATC | 7 cut(s) | 115, 271, 314, 481, 562, 841, 862 |
| DraIII | CACNNNGTG | 1 cut(s) | 774 |
| EaeI | YGGCCR | 1 cut(s) | 782 |
| Eam1104I | CTCTTC | 4 cut(s) | 192, 432, 807, 1830 |
| EarI | CTCTTC | 4 cut(s) | 192, 432, 807, 1830 |
| Eco130I | CCWWGG | 4 cut(s) | 334, 967, 1728, 1884 |
| Eco47I | GGWCC | 3 cut(s) | 331, 371, 1819 |
| Eco47III | AGCGCT | 1 cut(s) | 1018 |
| Eco57I | CTGAAG | 5 cut(s) | 1019, 1163, 1636, 1815, 2082 |
| Eco81I | CCTNAGG | 1 cut(s) | 858 |
| Eco88I | CYCGRG | 1 cut(s) | 137 |
| Eco91I | GGTNACC | 1 cut(s) | 828 |
| EcoO65I | GGTNACC | 1 cut(s) | 828 |
| EcoRI | GAATTC | 1 cut(s) | 1808 |
| EcoRII | CCWGG | 1 cut(s) | 340 |
| EcoT14I | CCWWGG | 4 cut(s) | 334, 967, 1728, 1884 |
| EcoT22I | ATGCAT | 2 cut(s) | 1216, 1374 |
| ErhI | CCWWGG | 4 cut(s) | 334, 967, 1728, 1884 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 189, 221 |
| FaqI | GGGAC | 2 cut(s) | 461, 1928 |
| FauNDI | CATATG | 3 cut(s) | 379, 876, 2123 |
| FblI | GTMKAC | 2 cut(s) | 1205, 1678 |
| Fnu4HI | GCNGC | 7 cut(s) | 6, 59, 186, 211, 1083, 1397, 1763 |
| FokI | GGATG | 6 cut(s) | 299, 407, 1173, 1201, 1603, 1842 |
| Fsp4HI | GCNGC | 7 cut(s) | 6, 59, 186, 211, 1083, 1397, 1763 |
| FspAI | RTGCGCAY | 1 cut(s) | 1230 |
| FspBI | CTAG | 4 cut(s) | 735, 915, 1559, 1647 |
| FspI | TGCGCA | 1 cut(s) | 1230 |
| GlaI | GCGC | 3 cut(s) | 641, 1018, 1230 |
| GluI | GCNGC | 7 cut(s) | 6, 59, 186, 211, 1083, 1397, 1763 |
| GsuI | CTGGAG | 2 cut(s) | 363, 1707 |
| HaeII | RGCGCY | 1 cut(s) | 1020 |
| HaeIII | GGCC | 6 cut(s) | 8, 103, 340, 784, 1495, 1549 |
| HapII | CCGG | 2 cut(s) | 99, 1390 |
| HhaI | GCGC | 3 cut(s) | 642, 1019, 1231 |
| Hin6I | GCGC | 3 cut(s) | 640, 1017, 1229 |
| HinP1I | GCGC | 3 cut(s) | 640, 1017, 1229 |
| HincII | GTYRAC | 3 cut(s) | 122, 520, 2011 |
| HindII | GTYRAC | 3 cut(s) | 122, 520, 2011 |
| HindIII | AAGCTT | 1 cut(s) | 575 |
| HpaII | CCGG | 2 cut(s) | 99, 1390 |
| HphI | GGTGA | 4 cut(s) | 250, 454, 1135, 2122 |
| Hpy99I | CGWCG | 1 cut(s) | 109 |
| HpyAV | CCTTC | 7 cut(s) | 1105, 1259, 1277, 1463, 1839, 1988, 2057 |
| HpyCH4III | ACNGT | 4 cut(s) | 532, 1312, 1434, 1819 |
| HpyCH4IV | ACGT | 1 cut(s) | 943 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 261, 639, 1014, 1088, 1138, 1228, 1235, 1799 |
| HpyF3I | CTNAG | 8 cut(s) | 12, 45, 493, 611, 771, 858, 928, 1133 |
| HpySE526I | ACGT | 1 cut(s) | 943 |
| HspAI | GCGC | 3 cut(s) | 640, 1017, 1229 |
| KpnI | GGTACC | 2 cut(s) | 1728, 1736 |
| Kzo9I | GATC | 7 cut(s) | 115, 271, 314, 481, 562, 841, 862 |
| LmnI | GCTCC | 2 cut(s) | 344, 1014 |
| Lsp1109I | GCAGC | 4 cut(s) | 172, 197, 1094, 1408 |
| LweI | GCATC | 6 cut(s) | 84, 277, 457, 1078, 1201, 1223 |
| MaeI | CTAG | 4 cut(s) | 735, 915, 1559, 1647 |
| MaeII | ACGT | 1 cut(s) | 943 |
| MaeIII | GTNAC | 5 cut(s) | 68, 442, 658, 828, 917 |
| MalI | GATC | 7 cut(s) | 117, 273, 316, 483, 564, 843, 864 |
| MboI | GATC | 7 cut(s) | 115, 271, 314, 481, 562, 841, 862 |
| MfeI | CAATTG | 3 cut(s) | 245, 1706, 2101 |
| MflI | RGATCY | 2 cut(s) | 481, 841 |
| MhlI | GDGCHC | 1 cut(s) | 597 |
| MlsI | TGGCCA | 1 cut(s) | 784 |
| MluNI | TGGCCA | 1 cut(s) | 784 |
| MlyI | GAGTC | 3 cut(s) | 25, 43, 1958 |
| MmeI | TCCRAC | 2 cut(s) | 349, 1903 |
| Mox20I | TGGCCA | 1 cut(s) | 784 |
| Mph1103I | ATGCAT | 2 cut(s) | 1216, 1374 |
| MroXI | GAANNNNTTC | 1 cut(s) | 201 |
| MscI | TGGCCA | 1 cut(s) | 784 |
| MseI | TTAA | 3 cut(s) | 573, 1524, 2072 |
| MslI | CAYNNNNRTG | 2 cut(s) | 613, 1367 |
| Msp20I | TGGCCA | 1 cut(s) | 784 |
| MspCI | CTTAAG | 1 cut(s) | 572 |
| MspI | CCGG | 2 cut(s) | 99, 1390 |
| MspR9I | CCNGG | 2 cut(s) | 100, 342 |
| MunI | CAATTG | 3 cut(s) | 245, 1706, 2101 |
| Mva1269I | GAATGC | 2 cut(s) | 1179, 2062 |
| MvaI | CCWGG | 1 cut(s) | 342 |
| MvnI | CGCG | 3 cut(s) | 642, 1305, 1438 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 261, 639, 1014, 1088, 1138, 1228, 1235, 1799 |
| NciI | CCSGG | 1 cut(s) | 100 |
| NcoI | CCATGG | 3 cut(s) | 334, 967, 1728 |
| NdeI | CATATG | 3 cut(s) | 379, 876, 2123 |
| NdeII | GATC | 7 cut(s) | 115, 271, 314, 481, 562, 841, 862 |
| NlaIV | GGNNCC | 5 cut(s) | 332, 843, 1726, 1734, 2096 |
| NmeAIII | GCCGAG | 2 cut(s) | 87, 1108 |
| NmuCI | GTSAC | 1 cut(s) | 442 |
| NsbI | TGCGCA | 1 cut(s) | 1230 |
| NsiI | ATGCAT | 2 cut(s) | 1216, 1374 |
| NspI | RCATGY | 3 cut(s) | 1372, 1376, 1896 |
| NspV | TTCGAA | 1 cut(s) | 535 |
| OliI | CACNNNNGTG | 1 cut(s) | 613 |
| PaeR7I | CTCGAG | 1 cut(s) | 137 |
| PaqCI | CACCTGC | 1 cut(s) | 1057 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 38 |
| PctI | GAATGC | 2 cut(s) | 1179, 2062 |
| PdmI | GAANNNNTTC | 1 cut(s) | 201 |
| PfeI | GAWTC | 7 cut(s) | 155, 385, 500, 1124, 1595, 1784, 1880 |
| PkrI | GCNGC | 7 cut(s) | 7, 60, 187, 212, 1084, 1398, 1764 |
| PleI | GAGTC | 3 cut(s) | 24, 43, 1958 |
| PpsI | GAGTC | 3 cut(s) | 24, 43, 1958 |
| Ppu21I | YACGTR | 1 cut(s) | 944 |
| PshBI | ATTAAT | 1 cut(s) | 1524 |
| Psp6I | CCWGG | 1 cut(s) | 340 |
| PspEI | GGTNACC | 1 cut(s) | 828 |
| PspGI | CCWGG | 1 cut(s) | 340 |
| PspN4I | GGNNCC | 5 cut(s) | 332, 843, 1726, 1734, 2096 |
| PspPI | GGNCC | 6 cut(s) | 101, 331, 338, 371, 1493, 1819 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 813, 845, 902, 934 |
| PstI | CTGCAG | 1 cut(s) | 1068 |
| PsuI | RGATCY | 2 cut(s) | 481, 841 |
| RsaI | GTAC | 6 cut(s) | 767, 795, 937, 1726, 1734, 1854 |
| RsaNI | GTAC | 6 cut(s) | 766, 794, 936, 1725, 1733, 1853 |
| RseI | CAYNNNNRTG | 2 cut(s) | 613, 1367 |
| SaqAI | TTAA | 3 cut(s) | 573, 1524, 2072 |
| SatI | GCNGC | 7 cut(s) | 6, 59, 186, 211, 1083, 1397, 1763 |
| Sau3AI | GATC | 7 cut(s) | 115, 271, 314, 481, 562, 841, 862 |
| Sau96I | GGNCC | 6 cut(s) | 101, 331, 338, 371, 1493, 1819 |
| ScaI | AGTACT | 1 cut(s) | 937 |
| SchI | GAGTC | 3 cut(s) | 25, 43, 1958 |
| ScrFI | CCNGG | 2 cut(s) | 100, 342 |
| SduI | GDGCHC | 1 cut(s) | 597 |
| SfaNI | GCATC | 6 cut(s) | 84, 277, 457, 1078, 1201, 1223 |
| SfcI | CTRYAG | 1 cut(s) | 1064 |
| Sfr274I | CTCGAG | 1 cut(s) | 137 |
| SfuI | TTCGAA | 1 cut(s) | 535 |
| SinI | GGWCC | 3 cut(s) | 331, 371, 1819 |
| SlaI | CTCGAG | 1 cut(s) | 137 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 613, 1367 |
| SmlI | CTYRAG | 2 cut(s) | 137, 572 |
| SmoI | CTYRAG | 2 cut(s) | 137, 572 |
| SsiI | CCGC | 7 cut(s) | 5, 59, 601, 642, 1305, 1438, 1762 |
| SspMI | CTAG | 4 cut(s) | 735, 915, 1559, 1647 |
| StyD4I | CCNGG | 2 cut(s) | 98, 340 |
| StyI | CCWWGG | 4 cut(s) | 334, 967, 1728, 1884 |
| TaaI | ACNGT | 4 cut(s) | 532, 1312, 1434, 1819 |
| TaiI | ACGT | 1 cut(s) | 946 |
| TaqI | TCGA | 6 cut(s) | 132, 138, 388, 535, 1044, 1314 |
| TatI | WGTACW | 3 cut(s) | 765, 793, 935 |
| TauI | GCSGC | 3 cut(s) | 8, 61, 1765 |
| TfiI | GAWTC | 7 cut(s) | 155, 385, 500, 1124, 1595, 1784, 1880 |
| Tru1I | TTAA | 3 cut(s) | 573, 1524, 2072 |
| Tru9I | TTAA | 3 cut(s) | 573, 1524, 2072 |
| TscAI | CASTG | 3 cut(s) | 779, 1016, 1187 |
| TseFI | GTSAC | 1 cut(s) | 442 |
| TseI | GCWGC | 4 cut(s) | 185, 210, 1082, 1396 |
| Tsp45I | GTSAC | 1 cut(s) | 442 |
| TspDTI | ATGAA | 7 cut(s) | 513, 834, 860, 923, 1482, 1494, 1797 |
| TspGWI | ACGGA | 2 cut(s) | 1603, 1848 |
| TspRI | CASTG | 3 cut(s) | 779, 1016, 1187 |
| Vha464I | CTTAAG | 1 cut(s) | 572 |
| VpaK11BI | GGWCC | 3 cut(s) | 331, 371, 1819 |
| VspI | ATTAAT | 1 cut(s) | 1524 |
| XapI | RAATTY | 2 cut(s) | 567, 1808 |
| XceI | RCATGY | 3 cut(s) | 1372, 1376, 1896 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1735 |
| XhoI | CTCGAG | 1 cut(s) | 137 |
| XmiI | GTMKAC | 2 cut(s) | 1205, 1678 |
| XmnI | GAANNNNTTC | 1 cut(s) | 201 |
| XspI | CTAG | 4 cut(s) | 735, 915, 1559, 1647 |
| ZrmI | AGTACT | 1 cut(s) | 937 |
| Zsp2I | ATGCAT | 2 cut(s) | 1216, 1374 |