Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002351

Physical Location & Seq

Genomic Coordinates Forward (+)

3793830 .. 3796202

Gene Structure 2373 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G11780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGCAACCTCCGATTTGTAAACCCAGACCTCAGAGTCACCTCGAATTTCTGAAACCGCTTCTCAATGACTCGATCAAGCAGCTCTTGTTACAGTACCGAGGCGGACGAACCAATTTCTCCGATTTCGACTCCATTTTCACTCGTATTCTTAACGATCTTCCCGAACCACCACCTCTCGAGCTCGTCTGGTTCTACTCCGCCATCAGATTCTACTCTTCCAAGTTAGCTTTCCGGGATGATTCCGTTAGGTTAACTTCGTGTTTCTTCCAGCTGATAGTTTCGTTTTCCGATTCGTTTTCCGGTGTTAAGAAGGTATCGCTGTTATCTCCCGTTGTTTACCAGTTGAGTCGTTTAGTTATTTCTAGGAGGAGAGATGCTTTGAGCTTGTTAGAAGGGATTGTGAGCTATATTAGCATGTACTGTGTCGATGAACCTGGAAATGAAGATGATGATGTGTTGATGGTCTCTGGGTTTAGTTTTGCTGATTTGAGTCGAGTTTGGGTTGTGGATGAAGTGGAAGATAATTGTAGAGTTGAGGATTGTTTGGAGGTGTTCATGCCATTTGCTAGTGAAATTTTGCGTAAAGAGATCGATTCTGAGTCCTGTGGCGTTGGTTACTTAGCTGGAATCGTAGCTTCTCAGGTTTTCTTGCTCAGTTTGTGCTCGAGGTTTGATTTGGACTTAGGTAGATCCGAGCTAGATAAAGATCTGCAGGAATCTGTGCTTCAGATGATATCTGGGTTCCACAGTTGCTTCTTTTTTGATGTCATTCTCAAGATGCTGCTGGAGCCATATCTGCATCTAACTTCATTAATGGGAGTGGTTCCAGAAGATGAAGCATTTTTAACGGAAATCATAACAGAAGCGGTGATTAAGTCAGTGGAGAAGCTATTCCTCAACCCTGGAAATGGAACTTCACAAAGAAGTTTACACTTGAAGAACATTGCTATCAACTGGTTGTTTCTTTTTGACAAGACTATGGCTTCTCTAAGGAGAAACAAAGATCAAGAAAAAATCAGCATGTACACGAACATGTTCTCCAATTCACTTATTCCTTATCATTTGATCAATTGGGTAATCAGTCAAGGTGAAGTGATTAGAGATGCAGACACACTAAGAAATTTGACCCCCGCATCCTTCATTGAATGGCTTGTATCACTGGAAGAGCAAGGACCAAGGGTGTTTAACTGTGACCATTCCAAAAACTACGCCAAATCTGTGATTCACAGGTCAAGACCAGATCTCAGTATCGGGACCACATTGCAGAAACAAGAAGAGGAGTTTGATCAAGATACAGACATGGCTGATGAACAAAATGTGTCATCTATCTCAATTCTCAGCAGAAACACAAGAAAGCGTAAAGAAGAGAGGCATAATAAGGAGGGAGAAACGAAAGTGAAGCTCTTCAAACATAGACATAGCAACCTTCAAGAGAACTCCAAGTTTCAACCTTTTGTCTTCTCGGGTAGTTTGGTGAATGGGAGTGAGGTTGAAGTTTCAGACATGGAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

504

Amino Acids

57.74

Weight (kDa)

5.13

Isoelectric Point (pI)

52.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11780
fragaria_vesca	FvH4_1g07060
malus_domestica	MD02G1074500.v1.1
prunus_persica	Prupe.7G213400_v2.0.a1
pyrus_communis	pycom02g05890 pycom15g18070
rosa_chinensis	RchiOBHm_Chr2g0092961 RchiOBHm_Chr4g0406051 RchiOBHm_Chr4g0425381
rosa_laevigata	RLG00000008045 RLG00000016353 RLG00000020789 RLG00000033390
rosa_multiflora	Rmu_co8270331.1_g000001 Rmu_sc0000596.1_g000010 Rmu_sc0000965.1_g000017 Rmu_sc0002862.1_g000003 Rmu_sc0002882.1_g000032 Rmu_sc0003902.1_g000018 Rmu_sc0006662.1_g000006 Rmu_sc0010963.1_g000006 Rmu_sc0012535.1_g000006
rosa_roxburghii	Rroxscaffold_2G00148670
rosa_rugosa	Rorug02G0030700
rosa_samantha	Rh1DG034900 Rh2AG076700 Rh2BG078000 Rh2CG080200 Rh2DG075300 Rh2DG566700 Rh3BG038800 Rh3CG266800 Rh3DG038000 Rh3DG262900 Rh6AG284700 Rh6BG048400 Rh6BG286100 Rh6CG287100 Rh7AG478700
rosa_wichuraiana	Rw2G006950 Rw3G003880 Rw3G021260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	33
AciI	CCGC	5 cut(s)	56, 102, 198, 866, 1131
AclWI	GGATC	1 cut(s)	684
AcsI	RAATTY	3 cut(s)	44, 573, 1120
AcuI	CTGAAG	1 cut(s)	710
AfaI	GTAC	3 cut(s)	95, 419, 1025
AfiI	CCNNNNNNNGG	1 cut(s)	908
AflIII	ACRYGT	1 cut(s)	1032
AgsI	TTSAA	6 cut(s)	937, 1145, 1408, 1430, 1448, 1493
AjnI	CCWGG	2 cut(s)	433, 901
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AloI	GAACNNNNNNTCC	2 cut(s)	1022, 1054
Alw21I	GWGCWC	2 cut(s)	183, 665
Alw26I	GTCTC	1 cut(s)	469
AlwI	GGATC	1 cut(s)	684
Ama87I	CYCGRG	3 cut(s)	176, 664, 1462
ApeKI	GCWGC	2 cut(s)	79, 781
ApoI	RAATTY	3 cut(s)	44, 573, 1120
AseI	ATTAAT	1 cut(s)	812
Asp700I	GAANNNNTTC	3 cut(s)	890, 1034, 1403
AspS9I	GGNCC	2 cut(s)	1172, 1254
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	4 cut(s)	29, 880, 1100, 1486
AvaI	CYCGRG	3 cut(s)	176, 664, 1462
AvaII	GGWCC	2 cut(s)	1172, 1254
BanII	GRGCYC	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	1450
Bbv12I	GWGCWC	2 cut(s)	183, 665
BbvI	GCAGC	2 cut(s)	91, 768
BccI	CCATC	2 cut(s)	209, 454
BciT130I	CCWGG	2 cut(s)	435, 903
BclI	TGATCA	2 cut(s)	1065, 1285
BcnI	CCSGG	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	469
BfaI	CTAG	3 cut(s)	363, 567, 698
BfmI	CTRYAG	1 cut(s)	710
BglII	AGATCT	2 cut(s)	706, 1240
BisI	GCNGC	2 cut(s)	80, 782
BlsI	GCNGC	2 cut(s)	81, 783
Bme1390I	CCNGG	3 cut(s)	233, 435, 903
Bme18I	GGWCC	2 cut(s)	1172, 1254
BmeT110I	CYCGRG	3 cut(s)	176, 664, 1462
BmgT120I	GGNCC	2 cut(s)	1172, 1254
BmiI	GGNNCC	4 cut(s)	743, 789, 825, 1255
BmrFI	CCNGG	3 cut(s)	233, 435, 903
BmsI	GCATC	5 cut(s)	364, 768, 808, 1093, 1142
BpiI	GAAGAC	1 cut(s)	1450
BpmI	CTGGAG	1 cut(s)	806
BpuEI	CTTGAG	1 cut(s)	758
BpuMI	CCSGG	1 cut(s)	233
Bsa29I	ATCGAT	1 cut(s)	591
BsaBI	GATNNNNATC	1 cut(s)	705
BsaI	GGTCTC	1 cut(s)	469
BsaJI	CCNNGG	3 cut(s)	97, 901, 1175
BsaWI	WCCGGW	1 cut(s)	299
BsaXI	ACNNNNNCTCC	2 cut(s)	1022, 1052
Bsc4I	CCNNNNNNNGG	1 cut(s)	908
Bse1I	ACTGG	3 cut(s)	340, 959, 1164
Bse3DI	GCAATG	2 cut(s)	942, 1259
Bse8I	GATNNNNATC	1 cut(s)	705
BseBI	CCWGG	2 cut(s)	435, 903
BseCI	ATCGAT	1 cut(s)	591
BseDI	CCNNGG	3 cut(s)	97, 901, 1175
BseGI	GGATG	3 cut(s)	241, 514, 1133
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	1 cut(s)	908
BseMI	GCAATG	2 cut(s)	942, 1259
BseMII	CTCAG	6 cut(s)	44, 588, 653, 667, 1258, 1351
BseNI	ACTGG	3 cut(s)	340, 959, 1164
BseRI	GAGGAG	2 cut(s)	382, 1292
BseXI	GCAGC	2 cut(s)	91, 768
BshVI	ATCGAT	1 cut(s)	591
BsiHKAI	GWGCWC	2 cut(s)	183, 665
BsiHKCI	CYCGRG	3 cut(s)	176, 664, 1462
BsiSI	CCGG	2 cut(s)	232, 300
BslFI	GGGAC	1 cut(s)	1267
BslI	CCNNNNNNNGG	1 cut(s)	908
BsmAI	GTCTC	1 cut(s)	469
BsmFI	GGGAC	1 cut(s)	1267
Bso31I	GGTCTC	1 cut(s)	469
BsoBI	CYCGRG	3 cut(s)	176, 664, 1462
Bsp1286I	GDGCHC	2 cut(s)	183, 665
Bsp1407I	TGTACA	1 cut(s)	1023
Bsp143I	GATC	9 cut(s)	72, 154, 588, 689, 706, 1003, 1065, 1240, 1285
BspACI	CCGC	5 cut(s)	56, 102, 198, 866, 1131
BspCNI	CTCAG	6 cut(s)	43, 589, 652, 666, 1257, 1350
BspDI	ATCGAT	1 cut(s)	591
BspLI	GGNNCC	4 cut(s)	743, 789, 825, 1255
BspMAI	CTGCAG	1 cut(s)	714
BspPI	GGATC	1 cut(s)	684
BspQI	GCTCTTC	2 cut(s)	1158, 1409
BspTNI	GGTCTC	1 cut(s)	469
BsrDI	GCAATG	2 cut(s)	942, 1259
BsrGI	TGTACA	1 cut(s)	1023
BsrI	ACTGG	3 cut(s)	340, 959, 1164
BssECI	CCNNGG	3 cut(s)	97, 901, 1175
BssMI	GATC	9 cut(s)	72, 154, 588, 689, 706, 1003, 1065, 1240, 1285
BssT1I	CCWWGG	1 cut(s)	1175
Bst2UI	CCWGG	2 cut(s)	435, 903
Bst4CI	ACNGT	4 cut(s)	93, 422, 749, 1190
Bst6I	CTCTTC	5 cut(s)	220, 1158, 1269, 1359, 1409
BstAUI	TGTACA	1 cut(s)	1023
BstF5I	GGATG	3 cut(s)	241, 514, 1133
BstKTI	GATC	9 cut(s)	75, 157, 591, 692, 709, 1006, 1068, 1243, 1288
BstMAI	GTCTC	1 cut(s)	469
BstMBI	GATC	9 cut(s)	72, 154, 588, 689, 706, 1003, 1065, 1240, 1285
BstMWI	GCNNNNNNNGC	3 cut(s)	411, 787, 796
BstNI	CCWGG	2 cut(s)	435, 903
BstNSI	RCATGY	3 cut(s)	418, 1024, 1036
BstSCI	CCNGG	3 cut(s)	231, 433, 901
BstSFI	CTRYAG	1 cut(s)	710
BstV1I	GCAGC	2 cut(s)	91, 768
BstV2I	GAAGAC	1 cut(s)	1450
BstX2I	RGATCY	3 cut(s)	689, 706, 1240
BstYI	RGATCY	3 cut(s)	689, 706, 1240
Bsu15I	ATCGAT	1 cut(s)	591
BsuTUI	ATCGAT	1 cut(s)	591
BtsCI	GGATG	3 cut(s)	241, 514, 1133
BtsIMutI	CAGTG	2 cut(s)	885, 1157
Cfr13I	GGNCC	2 cut(s)	1172, 1254
ClaI	ATCGAT	1 cut(s)	591
Csp6I	GTAC	3 cut(s)	94, 418, 1024
CviAII	CATG	6 cut(s)	415, 556, 1021, 1033, 1300, 1504
CviQI	GTAC	3 cut(s)	94, 418, 1024
DpnI	GATC	9 cut(s)	74, 156, 590, 691, 708, 1005, 1067, 1242, 1287
DpnII	GATC	9 cut(s)	72, 154, 588, 689, 706, 1003, 1065, 1240, 1285
DrdI	GACNNNNNNGTC	1 cut(s)	33
DseDI	GACNNNNNNGTC	1 cut(s)	33
Eam1104I	CTCTTC	5 cut(s)	220, 1158, 1269, 1359, 1409
EarI	CTCTTC	5 cut(s)	220, 1158, 1269, 1359, 1409
EciI	GGCGGA	2 cut(s)	117, 187
Ecl136II	GAGCTC	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	1175
Eco24I	GRGCYC	1 cut(s)	183
Eco31I	GGTCTC	1 cut(s)	469
Eco32I	GATATC	1 cut(s)	735
Eco47I	GGWCC	2 cut(s)	1172, 1254
Eco53kI	GAGCTC	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	710
Eco88I	CYCGRG	3 cut(s)	176, 664, 1462
EcoICRI	GAGCTC	1 cut(s)	181
EcoRII	CCWGG	2 cut(s)	433, 901
EcoRV	GATATC	1 cut(s)	735
EcoT14I	CCWWGG	1 cut(s)	1175
EcoT38I	GRGCYC	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	1175
FaeI	CATG	6 cut(s)	418, 559, 1024, 1036, 1303, 1507
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FaqI	GGGAC	1 cut(s)	1267
FatI	CATG	6 cut(s)	414, 555, 1020, 1032, 1299, 1503
FauI	CCCGC	1 cut(s)	1138
FbaI	TGATCA	2 cut(s)	1065, 1285
Fnu4HI	GCNGC	2 cut(s)	80, 782
FokI	GGATG	3 cut(s)	248, 521, 1120
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	2 cut(s)	80, 782
FspBI	CTAG	3 cut(s)	363, 567, 698
GluI	GCNGC	2 cut(s)	80, 782
GsuI	CTGGAG	1 cut(s)	806
HapII	CCGG	2 cut(s)	232, 300
Hin1II	CATG	6 cut(s)	418, 559, 1024, 1036, 1303, 1507
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HpaI	GTTAAC	1 cut(s)	252
HpaII	CCGG	2 cut(s)	232, 300
HphI	GGTGA	4 cut(s)	29, 880, 1100, 1486
Hpy166II	GTNNAC	5 cut(s)	20, 252, 337, 929, 1026
Hpy188III	TCNNGA	9 cut(s)	161, 176, 775, 827, 1007, 1233, 1252, 1289, 1430
Hpy8I	GTNNAC	5 cut(s)	20, 252, 337, 929, 1026
HpyAV	CCTTC	4 cut(s)	304, 386, 1147, 1436
HpyCH4III	ACNGT	4 cut(s)	93, 422, 749, 1190
HpyCH4V	TGCA	5 cut(s)	4, 712, 799, 1106, 1264
HpyF10VI	GCNNNNNNNGC	3 cut(s)	411, 787, 796
Hsp92II	CATG	6 cut(s)	418, 559, 1024, 1036, 1303, 1507
Ksp22I	TGATCA	2 cut(s)	1065, 1285
KspAI	GTTAAC	1 cut(s)	252
Kzo9I	GATC	9 cut(s)	72, 154, 588, 689, 706, 1003, 1065, 1240, 1285
LguI	GCTCTTC	2 cut(s)	1158, 1409
LmnI	GCTCC	2 cut(s)	787, 1507
Lsp1109I	GCAGC	2 cut(s)	91, 768
LweI	GCATC	5 cut(s)	364, 768, 808, 1093, 1142
MaeI	CTAG	3 cut(s)	363, 567, 698
MaeIII	GTNAC	4 cut(s)	35, 87, 614, 1190
MalI	GATC	9 cut(s)	74, 156, 590, 691, 708, 1005, 1067, 1242, 1287
MboI	GATC	9 cut(s)	72, 154, 588, 689, 706, 1003, 1065, 1240, 1285
MfeI	CAATTG	1 cut(s)	1069
MflI	RGATCY	3 cut(s)	689, 706, 1240
MhlI	GDGCHC	2 cut(s)	183, 665
MluCI	AATT	8 cut(s)	44, 112, 523, 573, 1042, 1069, 1120, 1332
MlyI	GAGTC	6 cut(s)	43, 62, 122, 355, 499, 608
MroXI	GAANNNNTTC	3 cut(s)	890, 1034, 1403
MseI	TTAA	7 cut(s)	150, 251, 306, 812, 845, 873, 1185
MslI	CAYNNNNRTG	1 cut(s)	1031
MspA1I	CMGCKG	1 cut(s)	271
MspI	CCGG	2 cut(s)	232, 300
MspR9I	CCNGG	3 cut(s)	233, 435, 903
MunI	CAATTG	1 cut(s)	1069
MvaI	CCWGG	2 cut(s)	435, 903
MwoI	GCNNNNNNNGC	3 cut(s)	411, 787, 796
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	9 cut(s)	72, 154, 588, 689, 706, 1003, 1065, 1240, 1285
NlaIII	CATG	6 cut(s)	418, 559, 1024, 1036, 1303, 1507
NlaIV	GGNNCC	4 cut(s)	743, 789, 825, 1255
NmuCI	GTSAC	2 cut(s)	35, 1190
NspI	RCATGY	3 cut(s)	418, 1024, 1036
PaeR7I	CTCGAG	2 cut(s)	176, 664
PciI	ACATGT	1 cut(s)	1032
PciSI	GCTCTTC	2 cut(s)	1158, 1409
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PdmI	GAANNNNTTC	3 cut(s)	890, 1034, 1403
PfeI	GAWTC	7 cut(s)	207, 239, 290, 593, 627, 716, 1222
PfoI	TCCNGGA	1 cut(s)	231
PkrI	GCNGC	2 cut(s)	81, 783
PleI	GAGTC	6 cut(s)	42, 62, 122, 354, 498, 607
PpsI	GAGTC	6 cut(s)	42, 62, 122, 354, 498, 607
PscI	ACATGT	1 cut(s)	1032
PshBI	ATTAAT	1 cut(s)	812
Psp124BI	GAGCTC	1 cut(s)	183
Psp6I	CCWGG	2 cut(s)	433, 901
PspGI	CCWGG	2 cut(s)	433, 901
PspN4I	GGNNCC	4 cut(s)	743, 789, 825, 1255
PspPI	GGNCC	2 cut(s)	1172, 1254
PspXI	VCTCGAGB	1 cut(s)	664
PstI	CTGCAG	1 cut(s)	714
PsuI	RGATCY	3 cut(s)	689, 706, 1240
PvuII	CAGCTG	1 cut(s)	271
RsaI	GTAC	3 cut(s)	95, 419, 1025
RsaNI	GTAC	3 cut(s)	94, 418, 1024
RseI	CAYNNNNRTG	1 cut(s)	1031
SacI	GAGCTC	1 cut(s)	183
SapI	GCTCTTC	2 cut(s)	1158, 1409
SaqAI	TTAA	7 cut(s)	150, 251, 306, 812, 845, 873, 1185
SatI	GCNGC	2 cut(s)	80, 782
Sau3AI	GATC	9 cut(s)	72, 154, 588, 689, 706, 1003, 1065, 1240, 1285
Sau96I	GGNCC	2 cut(s)	1172, 1254
SchI	GAGTC	6 cut(s)	43, 62, 122, 355, 499, 608
ScrFI	CCNGG	3 cut(s)	233, 435, 903
SduI	GDGCHC	2 cut(s)	183, 665
SfaNI	GCATC	5 cut(s)	364, 768, 808, 1093, 1142
SfcI	CTRYAG	1 cut(s)	710
Sfr274I	CTCGAG	2 cut(s)	176, 664
SinI	GGWCC	2 cut(s)	1172, 1254
SlaI	CTCGAG	2 cut(s)	176, 664
SmiMI	CAYNNNNRTG	1 cut(s)	1031
SmlI	CTYRAG	3 cut(s)	176, 664, 773
SmoI	CTYRAG	3 cut(s)	176, 664, 773
Sse9I	AATT	8 cut(s)	44, 112, 523, 573, 1042, 1069, 1120, 1332
SsiI	CCGC	5 cut(s)	56, 102, 198, 866, 1131
SspMI	CTAG	3 cut(s)	363, 567, 698
SstI	GAGCTC	1 cut(s)	183
StyD4I	CCNGG	3 cut(s)	231, 433, 901
StyI	CCWWGG	1 cut(s)	1175
TaaI	ACNGT	4 cut(s)	93, 422, 749, 1190
TaqI	TCGA	8 cut(s)	42, 71, 126, 177, 426, 493, 591, 665
TasI	AATT	8 cut(s)	44, 112, 523, 573, 1042, 1069, 1120, 1332
TatI	WGTACW	2 cut(s)	417, 1023
TfiI	GAWTC	7 cut(s)	207, 239, 290, 593, 627, 716, 1222
Tru1I	TTAA	7 cut(s)	150, 251, 306, 812, 845, 873, 1185
Tru9I	TTAA	7 cut(s)	150, 251, 306, 812, 845, 873, 1185
TscAI	CASTG	2 cut(s)	885, 1164
TseFI	GTSAC	2 cut(s)	35, 1190
TseI	GCWGC	2 cut(s)	79, 781
Tsp45I	GTSAC	2 cut(s)	35, 1190
TspDTI	ATGAA	8 cut(s)	444, 456, 525, 544, 798, 849, 1129, 1323
TspGWI	ACGGA	2 cut(s)	232, 863
TspRI	CASTG	2 cut(s)	885, 1164
VpaK11BI	GGWCC	2 cut(s)	1172, 1254
VspI	ATTAAT	1 cut(s)	812
XapI	RAATTY	3 cut(s)	44, 573, 1120
XceI	RCATGY	3 cut(s)	418, 1024, 1036
XhoI	CTCGAG	2 cut(s)	176, 664
XmnI	GAANNNNTTC	3 cut(s)	890, 1034, 1403
XspI	CTAG	3 cut(s)	363, 567, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.