RchiOBHm_Chr4g0425381

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002351
Physical Location & Seq
Reverse (-)
50974830 .. 50975523
694 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39454

Sequence Viewer

Length: 618 bp
ATGCAAGCTCGGGTCGACCGGCCTCTCGAATCCATCTGGGTCTACACTGCATTGACATTTCGGAGCCGGAACCACCCGAAAGGCGACATCTTGGACCGAATCGCCGCTGCAAAGGACTTGTTTCAGCTACTATCCTCTTGCTCAGCTCCCTGCTGTTGCTCAAAAAGATTCGCGCTGCTCGTTCAGGTGGTGCGGTTGGCACACGACGTTGTTTTGGATTTGTTTAAGAGGGAATTGGGGTTTAAGAAAGAGAAGAAAGTGACGAAGGAGGTGAAGAATTTGGTGGGAGTGATTATGGGGTTTATAAGTGTGTGCTGTTCTAGCAGGGATTTGGGTCAGGAGGATCCTTTGATTGATTCGAGTTCGGGTTGGTCTTTTTCGAGTTTAAGTTTTGTTTGGTTGAACAGAGATGAGAATGTTAGGAATTTGTTACCATTAGTGAGTGAGGAGGTGATTGATGGGCTCAGTGAGAGAGATGGGGATGAGTTACTTGGCTGGAGTTGTTATTGCAGAGGTTTTTTTGTTGAGACTCTGCTTGAATTGCAAAGCTGGGACTTCAGGGGAGGTGTTGAAGACAGAGTTGAGGACTTGGGCTGTCAACAGGGGCGCCTGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

23.2

Weight (kDa)

5.34

Isoelectric Point (pI)

38.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 305
AccB1I GGYRCC 1 cut(s) 606
AccI GTMKAC 2 cut(s) 15, 42
AccII CGCG 1 cut(s) 173
AciI CCGC 2 cut(s) 105, 193
AclWI GGATC 2 cut(s) 338, 351
AcsI RAATTY 2 cut(s) 277, 424
AcuI CTGAAG 1 cut(s) 541
AcyI GRCGYC 1 cut(s) 607
AgsI TTSAA 3 cut(s) 403, 539, 572
AluBI AGCT 4 cut(s) 8, 127, 146, 549
AluI AGCT 4 cut(s) 8, 127, 146, 549
Alw26I GTCTC 1 cut(s) 521
AlwI GGATC 2 cut(s) 338, 351
Ama87I CYCGRG 1 cut(s) 9
AoxI GGCC 1 cut(s) 20
ApeKI GCWGC 2 cut(s) 107, 175
ApoI RAATTY 2 cut(s) 277, 424
AspLEI GCGC 2 cut(s) 175, 609
AspS9I GGNCC 1 cut(s) 94
AsuHPI GGTGA 2 cut(s) 283, 463
AvaI CYCGRG 1 cut(s) 9
AvaII GGWCC 1 cut(s) 94
BamHI GGATCC 1 cut(s) 343
BanI GGYRCC 1 cut(s) 606
BanII GRGCYC 1 cut(s) 465
BbsI GAAGAC 1 cut(s) 579
BbvI GCAGC 2 cut(s) 94, 162
BccI CCATC 3 cut(s) 41, 452, 470
BcoDI GTCTC 1 cut(s) 521
BfaI CTAG 1 cut(s) 321
BfoI RGCGCY 1 cut(s) 610
BisI GCNGC 3 cut(s) 105, 108, 176
BlpI GCTNAGC 1 cut(s) 142
BlsI GCNGC 3 cut(s) 106, 109, 177
Bme18I GGWCC 1 cut(s) 94
BmeT110I CYCGRG 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 94
BmiI GGNNCC 4 cut(s) 65, 71, 345, 608
BpiI GAAGAC 1 cut(s) 579
BpmI CTGGAG 1 cut(s) 517
Bpu1102I GCTNAGC 1 cut(s) 142
BsaHI GRCGYC 1 cut(s) 607
Bse118I RCCGGY 1 cut(s) 18
BseGI GGATG 1 cut(s) 487
BseMII CTCAG 2 cut(s) 156, 478
BseRI GAGGAG 1 cut(s) 461
BseXI GCAGC 2 cut(s) 94, 162
BseYI CCCAGC 1 cut(s) 549
Bsh1236I CGCG 1 cut(s) 173
Bsh1285I CGRYCG 1 cut(s) 19
BshFI GGCC 1 cut(s) 22
BshNI GGYRCC 1 cut(s) 606
BsiEI CGRYCG 1 cut(s) 19
BsiHKCI CYCGRG 1 cut(s) 9
BsiSI CCGG 2 cut(s) 19, 67
BslFI GGGAC 1 cut(s) 566
BsmAI GTCTC 1 cut(s) 521
BsmFI GGGAC 1 cut(s) 566
BsnI GGCC 1 cut(s) 22
BsoBI CYCGRG 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 465
Bsp143I GATC 1 cut(s) 343
Bsp1720I GCTNAGC 1 cut(s) 142
BspACI CCGC 2 cut(s) 105, 193
BspANI GGCC 1 cut(s) 22
BspCNI CTCAG 2 cut(s) 155, 477
BspFNI CGCG 1 cut(s) 173
BspLI GGNNCC 4 cut(s) 65, 71, 345, 608
BspPI GGATC 2 cut(s) 338, 351
BspT107I GGYRCC 1 cut(s) 606
BsrFI RCCGGY 1 cut(s) 18
BssAI RCCGGY 1 cut(s) 18
BssMI GATC 1 cut(s) 343
BssNI GRCGYC 1 cut(s) 607
BstACI GRCGYC 1 cut(s) 607
BstC8I GCNNGC 2 cut(s) 6, 611
BstDEI CTNAG 2 cut(s) 142, 464
BstF5I GGATG 1 cut(s) 487
BstFNI CGCG 1 cut(s) 173
BstH2I RGCGCY 1 cut(s) 610
BstHHI GCGC 2 cut(s) 175, 609
BstKTI GATC 1 cut(s) 346
BstMAI GTCTC 1 cut(s) 521
BstMBI GATC 1 cut(s) 343
BstMCI CGRYCG 1 cut(s) 19
BstMWI GCNNNNNNNGC 2 cut(s) 321, 541
BstUI CGCG 1 cut(s) 173
BstV1I GCAGC 2 cut(s) 94, 162
BstV2I GAAGAC 1 cut(s) 579
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
BsuRI GGCC 1 cut(s) 22
BtsCI GGATG 1 cut(s) 487
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 2 cut(s) 45, 472
Cac8I GCNNGC 2 cut(s) 6, 611
CfoI GCGC 2 cut(s) 175, 609
Cfr10I RCCGGY 1 cut(s) 18
Cfr13I GGNCC 1 cut(s) 94
CviJI RGCY 9 cut(s) 8, 22, 66, 127, 146, 463, 495, 549, 594
CviKI_1 RGCY 9 cut(s) 8, 22, 66, 127, 146, 463, 495, 549, 594
DdeI CTNAG 2 cut(s) 142, 464
DinI GGCGCC 1 cut(s) 608
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 465
Eco47I GGWCC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 541
Eco88I CYCGRG 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 465
EgeI GGCGCC 1 cut(s) 608
EheI GGCGCC 1 cut(s) 608
FaiI YATR 2 cut(s) 296, 305
FaqI GGGAC 1 cut(s) 566
FblI GTMKAC 2 cut(s) 15, 42
Fnu4HI GCNGC 3 cut(s) 105, 108, 176
FokI GGATG 1 cut(s) 494
FriOI GRGCYC 1 cut(s) 465
Fsp4HI GCNGC 3 cut(s) 105, 108, 176
FspBI CTAG 1 cut(s) 321
GlaI GCGC 2 cut(s) 174, 608
GluI GCNGC 3 cut(s) 105, 108, 176
GsaI CCCAGC 1 cut(s) 553
GsuI CTGGAG 1 cut(s) 517
HaeII RGCGCY 1 cut(s) 610
HaeIII GGCC 1 cut(s) 22
HapII CCGG 2 cut(s) 19, 67
HhaI GCGC 2 cut(s) 175, 609
Hin1I GRCGYC 1 cut(s) 607
Hin6I GCGC 2 cut(s) 173, 607
HinP1I GCGC 2 cut(s) 173, 607
HincII GTYRAC 2 cut(s) 16, 599
HindII GTYRAC 2 cut(s) 16, 599
HinfI GANTC 5 cut(s) 29, 99, 168, 356, 529
HpaII CCGG 2 cut(s) 19, 67
HphI GGTGA 2 cut(s) 283, 463
Hpy166II GTNNAC 3 cut(s) 16, 43, 599
Hpy188I TCNGA 1 cut(s) 63
Hpy188III TCNNGA 2 cut(s) 26, 338
Hpy8I GTNNAC 3 cut(s) 16, 43, 599
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 1 cut(s) 259
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 5 cut(s) 4, 50, 110, 510, 544
HpyF10VI GCNNNNNNNGC 2 cut(s) 321, 541
HpyF3I CTNAG 2 cut(s) 142, 464
HpySE526I ACGT 1 cut(s) 207
Hsp92I GRCGYC 1 cut(s) 607
HspAI GCGC 2 cut(s) 173, 607
KasI GGCGCC 1 cut(s) 606
Kzo9I GATC 1 cut(s) 343
LmnI GCTCC 2 cut(s) 63, 151
Lsp1109I GCAGC 2 cut(s) 94, 162
MaeI CTAG 1 cut(s) 321
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 3 cut(s) 259, 429, 486
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MboII GAAGA 3 cut(s) 265, 286, 584
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 1 cut(s) 465
MluCI AATT 4 cut(s) 233, 277, 424, 539
Mly113I GGCGCC 1 cut(s) 607
MlyI GAGTC 1 cut(s) 523
MseI TTAA 3 cut(s) 225, 243, 386
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 2 cut(s) 19, 67
MvnI CGCG 1 cut(s) 173
MwoI GCNNNNNNNGC 2 cut(s) 321, 541
NarI GGCGCC 1 cut(s) 607
NdeII GATC 1 cut(s) 343
NlaIV GGNNCC 4 cut(s) 65, 71, 345, 608
NmuCI GTSAC 1 cut(s) 259
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PfeI GAWTC 4 cut(s) 29, 99, 168, 356
PkrI GCNGC 3 cut(s) 106, 109, 177
PleI GAGTC 1 cut(s) 523
PluTI GGCGCC 1 cut(s) 610
PpsI GAGTC 1 cut(s) 523
PsiI TTATAA 1 cut(s) 305
PspFI CCCAGC 1 cut(s) 549
PspN4I GGNNCC 4 cut(s) 65, 71, 345, 608
PspPI GGNCC 1 cut(s) 94
PsuI RGATCY 1 cut(s) 343
SalI GTCGAC 1 cut(s) 14
SaqAI TTAA 3 cut(s) 225, 243, 386
SatI GCNGC 3 cut(s) 105, 108, 176
Sau3AI GATC 1 cut(s) 343
Sau96I GGNCC 1 cut(s) 94
SchI GAGTC 1 cut(s) 523
SduI GDGCHC 1 cut(s) 465
SfoI GGCGCC 1 cut(s) 608
SinI GGWCC 1 cut(s) 94
Sse9I AATT 4 cut(s) 233, 277, 424, 539
SsiI CCGC 2 cut(s) 105, 193
SspDI GGCGCC 1 cut(s) 606
SspMI CTAG 1 cut(s) 321
TaiI ACGT 1 cut(s) 210
TaqI TCGA 4 cut(s) 15, 27, 359, 380
TaqII GACCGA 1 cut(s) 111
TasI AATT 4 cut(s) 233, 277, 424, 539
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 4 cut(s) 29, 99, 168, 356
Tru1I TTAA 3 cut(s) 225, 243, 386
Tru9I TTAA 3 cut(s) 225, 243, 386
TscAI CASTG 2 cut(s) 52, 472
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 2 cut(s) 107, 175
Tsp45I GTSAC 1 cut(s) 259
TspRI CASTG 2 cut(s) 52, 472
VpaK11BI GGWCC 1 cut(s) 94
XapI RAATTY 2 cut(s) 277, 424
XmiI GTMKAC 2 cut(s) 15, 42
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.