Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003902.1

Orthogroup ID

OG0002351

Physical Location & Seq

Genomic Coordinates Forward (+)

74231 .. 75103

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003902.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atgcaacagggaaggttagggtttcctacaagctcaaaaaggttagggttttacttgagctcagctcctactagctctcactacaaatcaaacagtttcaccatagttctatctctaatcgagttcacgacttcctcaaatccaccaaactccgaaccccaaattaagctaagcccttcaattcaaaccgttgtagatgaaatccaaaaggaaaaccccaaactctctcccttgattcaacaattctaccaaccaatgcaatcttgggtcgacccgcctcttgaatccatctgggtctacaccgcattgacatttcggagccgaaacctcccaaaaggcgacatcttggaccgaatcgctgtcacaaaggacttgtttcagctgctctcctcttgctcaactccctgcggttcctcaaagagtgtagcgctgctcgctccagtggtgcggttggcacacgatgtcgttttggatttgtttaagagggagttggggttgaagaaagagaagaaagtgatgaaggaggtgaagaatttggtgggagtgattctggggtttataaatgtatgttgttctagcagtgattcgagtcaggaggaagctttgattgattcgagttcgggttggtcttttttgggtttaatttatgtttggttgaacatagatgagaatgttaggaatttgttacctttagtgagtgaggaggtgattggtgggcttagtgagagagatggggatgtgagctacttggttggagttgttattactgaggtttttttgttgagactatgcttgaattacaaagctgggacttcaggggaggtgttggagacagagttgaggacttgtagtgaagtggcggggggatcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

290

Amino Acids

31.91

Weight (kDa)

5.4

Isoelectric Point (pI)

51.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11780
fragaria_vesca	FvH4_1g07060
malus_domestica	MD02G1074500.v1.1
prunus_persica	Prupe.7G213400_v2.0.a1
pyrus_communis	pycom02g05890 pycom15g18070
rosa_chinensis	RchiOBHm_Chr2g0092961 RchiOBHm_Chr4g0406051 RchiOBHm_Chr4g0425381
rosa_laevigata	RLG00000008045 RLG00000016353 RLG00000020789 RLG00000033390
rosa_multiflora	Rmu_co8270331.1_g000001 Rmu_sc0000596.1_g000010 Rmu_sc0000965.1_g000017 Rmu_sc0002862.1_g000003 Rmu_sc0002882.1_g000032 Rmu_sc0003902.1_g000018 Rmu_sc0006662.1_g000006 Rmu_sc0010963.1_g000006 Rmu_sc0012535.1_g000006
rosa_roxburghii	Rroxscaffold_2G00148670
rosa_rugosa	Rorug02G0030700
rosa_samantha	Rh1DG034900 Rh2AG076700 Rh2BG078000 Rh2CG080200 Rh2DG075300 Rh2DG566700 Rh3BG038800 Rh3CG266800 Rh3DG038000 Rh3DG262900 Rh6AG284700 Rh6BG048400 Rh6BG286100 Rh6CG287100 Rh7AG478700
rosa_wichuraiana	Rw2G006950 Rw3G003880 Rw3G021260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	560
AccI	GTMKAC	2 cut(s)	270, 297
AciI	CCGC	5 cut(s)	275, 303, 408, 448, 860
AcsI	RAATTY	2 cut(s)	532, 679
AcuI	CTGAAG	1 cut(s)	798
AfeI	AGCGCT	1 cut(s)	429
AgsI	TTSAA	7 cut(s)	180, 185, 239, 284, 499, 658, 796
AluBI	AGCT	9 cut(s)	33, 60, 65, 75, 169, 382, 602, 744, 806
AluI	AGCT	9 cut(s)	33, 60, 65, 75, 169, 382, 602, 744, 806
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	2 cut(s)	778, 824
Aor51HI	AGCGCT	1 cut(s)	429
ApeKI	GCWGC	2 cut(s)	382, 430
ApoI	RAATTY	2 cut(s)	532, 679
AspLEI	GCGC	1 cut(s)	430
AspS9I	GGNCC	1 cut(s)	349
AsuHPI	GGTGA	3 cut(s)	91, 538, 718
AvaII	GGWCC	1 cut(s)	349
BanII	GRGCYC	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	62
BbvI	GCAGC	2 cut(s)	369, 417
BccI	CCATC	2 cut(s)	296, 725
BcoDI	GTCTC	2 cut(s)	778, 824
BfaI	CTAG	2 cut(s)	72, 576
BfoI	RGCGCY	1 cut(s)	431
BisI	GCNGC	2 cut(s)	383, 431
BlpI	GCTNAGC	2 cut(s)	61, 170
BlsI	GCNGC	2 cut(s)	384, 432
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	349
BmiI	GGNNCC	2 cut(s)	320, 412
BplI	GAGNNNNNCTC	2 cut(s)	49, 81
BpmI	CTGGAG	1 cut(s)	423
Bpu1102I	GCTNAGC	2 cut(s)	61, 170
BpuEI	CTTGAG	1 cut(s)	76
BsaXI	ACNNNNNCTCC	4 cut(s)	479, 509, 821, 851
Bse1I	ACTGG	1 cut(s)	440
BseGI	GGATG	1 cut(s)	742
BseMII	CTCAG	2 cut(s)	75, 759
BseNI	ACTGG	1 cut(s)	440
BseRI	GAGGAG	2 cut(s)	379, 716
BseXI	GCAGC	2 cut(s)	369, 417
BseYI	CCCAGC	1 cut(s)	806
BsiHKAI	GWGCWC	1 cut(s)	62
BslFI	GGGAC	1 cut(s)	823
BsmAI	GTCTC	2 cut(s)	778, 824
BsmFI	GGGAC	1 cut(s)	823
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp143I	GATC	1 cut(s)	866
Bsp1720I	GCTNAGC	2 cut(s)	61, 170
BspACI	CCGC	5 cut(s)	275, 303, 408, 448, 860
BspCNI	CTCAG	2 cut(s)	74, 760
BspHI	TCATGA	1 cut(s)	869
BspLI	GGNNCC	2 cut(s)	320, 412
BsrI	ACTGG	1 cut(s)	440
BssMI	GATC	1 cut(s)	866
Bst4CI	ACNGT	2 cut(s)	95, 190
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	4 cut(s)	61, 170, 719, 768
BstF5I	GGATG	1 cut(s)	742
BstH2I	RGCGCY	1 cut(s)	431
BstHHI	GCGC	1 cut(s)	430
BstKTI	GATC	1 cut(s)	869
BstMAI	GTCTC	2 cut(s)	778, 824
BstMBI	GATC	1 cut(s)	866
BstMWI	GCNNNNNNNGC	1 cut(s)	434
BstV1I	GCAGC	2 cut(s)	369, 417
BtsCI	GGATG	1 cut(s)	742
BtsI	GCAGTG	1 cut(s)	586
BtsIMutI	CAGTG	2 cut(s)	447, 586
Cac8I	GCNNGC	1 cut(s)	435
CciI	TCATGA	1 cut(s)	869
CfoI	GCGC	1 cut(s)	430
Cfr13I	GGNCC	1 cut(s)	349
CviAII	CATG	1 cut(s)	870
DdeI	CTNAG	4 cut(s)	61, 170, 719, 768
DpnI	GATC	1 cut(s)	868
DpnII	GATC	1 cut(s)	866
Ecl136II	GAGCTC	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	62
Eco47I	GGWCC	1 cut(s)	349
Eco47III	AGCGCT	1 cut(s)	429
Eco53kI	GAGCTC	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	798
EcoICRI	GAGCTC	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	62
FaeI	CATG	1 cut(s)	873
FaiI	YATR	7 cut(s)	104, 560, 568, 648, 662, 790, 871
FaqI	GGGAC	1 cut(s)	823
FatI	CATG	1 cut(s)	869
FauI	CCCGC	2 cut(s)	282, 853
FblI	GTMKAC	2 cut(s)	270, 297
Fnu4HI	GCNGC	2 cut(s)	383, 431
FokI	GGATG	1 cut(s)	749
FriOI	GRGCYC	1 cut(s)	62
Fsp4HI	GCNGC	2 cut(s)	383, 431
FspBI	CTAG	2 cut(s)	72, 576
GlaI	GCGC	1 cut(s)	429
GluI	GCNGC	2 cut(s)	383, 431
GsaI	CCCAGC	1 cut(s)	810
GsuI	CTGGAG	1 cut(s)	423
HaeII	RGCGCY	1 cut(s)	431
HhaI	GCGC	1 cut(s)	430
Hin1II	CATG	1 cut(s)	873
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HindIII	AAGCTT	1 cut(s)	600
HinfI	GANTC	7 cut(s)	235, 284, 354, 547, 584, 589, 611
HphI	GGTGA	3 cut(s)	91, 538, 718
Hpy166II	GTNNAC	3 cut(s)	126, 271, 298
Hpy188I	TCNGA	2 cut(s)	154, 318
Hpy188III	TCNNGA	4 cut(s)	127, 281, 593, 870
Hpy8I	GTNNAC	3 cut(s)	126, 271, 298
HpyAV	CCTTC	3 cut(s)	6, 186, 514
HpyCH4III	ACNGT	2 cut(s)	95, 190
HpyCH4V	TGCA	2 cut(s)	4, 259
HpyF10VI	GCNNNNNNNGC	1 cut(s)	434
HpyF3I	CTNAG	4 cut(s)	61, 170, 719, 768
Hsp92II	CATG	1 cut(s)	873
HspAI	GCGC	1 cut(s)	428
Kzo9I	GATC	1 cut(s)	866
LmnI	GCTCC	3 cut(s)	70, 318, 442
LpnPI	CCDG	7 cut(s)	277, 418, 453, 536, 578, 792, 801
Lsp1109I	GCAGC	2 cut(s)	369, 417
MaeI	CTAG	2 cut(s)	72, 576
MaeIII	GTNAC	2 cut(s)	361, 684
MalI	GATC	1 cut(s)	868
MboI	GATC	1 cut(s)	866
MboII	GAAGA	3 cut(s)	511, 520, 541
MhlI	GDGCHC	1 cut(s)	62
MluCI	AATT	7 cut(s)	162, 180, 242, 532, 642, 679, 796
MlyI	GAGTC	1 cut(s)	598
MmeI	TCCRAC	2 cut(s)	733, 807
MseI	TTAA	3 cut(s)	165, 480, 641
MspA1I	CMGCKG	1 cut(s)	382
MwoI	GCNNNNNNNGC	1 cut(s)	434
NdeII	GATC	1 cut(s)	866
NlaIII	CATG	1 cut(s)	873
NlaIV	GGNNCC	2 cut(s)	320, 412
NmuCI	GTSAC	1 cut(s)	361
PagI	TCATGA	1 cut(s)	869
PfeI	GAWTC	6 cut(s)	235, 284, 354, 547, 584, 611
PkrI	GCNGC	2 cut(s)	384, 432
PleI	GAGTC	1 cut(s)	597
PpsI	GAGTC	1 cut(s)	597
PsiI	TTATAA	1 cut(s)	560
Psp124BI	GAGCTC	1 cut(s)	62
PspFI	CCCAGC	1 cut(s)	806
PspN4I	GGNNCC	2 cut(s)	320, 412
PspPI	GGNCC	1 cut(s)	349
PvuII	CAGCTG	1 cut(s)	382
SacI	GAGCTC	1 cut(s)	62
SalI	GTCGAC	1 cut(s)	269
SaqAI	TTAA	3 cut(s)	165, 480, 641
SatI	GCNGC	2 cut(s)	383, 431
Sau3AI	GATC	1 cut(s)	866
Sau96I	GGNCC	1 cut(s)	349
SchI	GAGTC	1 cut(s)	598
SduI	GDGCHC	1 cut(s)	62
SinI	GGWCC	1 cut(s)	349
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
Sse9I	AATT	7 cut(s)	162, 180, 242, 532, 642, 679, 796
SsiI	CCGC	5 cut(s)	275, 303, 408, 448, 860
SspMI	CTAG	2 cut(s)	72, 576
SstI	GAGCTC	1 cut(s)	62
TaaI	ACNGT	2 cut(s)	95, 190
TaqI	TCGA	4 cut(s)	120, 270, 587, 614
TaqII	GACCGA	1 cut(s)	366
TasI	AATT	7 cut(s)	162, 180, 242, 532, 642, 679, 796
TfiI	GAWTC	6 cut(s)	235, 284, 354, 547, 584, 611
Tru1I	TTAA	3 cut(s)	165, 480, 641
Tru9I	TTAA	3 cut(s)	165, 480, 641
TscAI	CASTG	2 cut(s)	447, 586
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	2 cut(s)	382, 430
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	2 cut(s)	213, 533
TspRI	CASTG	2 cut(s)	447, 586
VpaK11BI	GGWCC	1 cut(s)	349
XapI	RAATTY	2 cut(s)	532, 679
XcmI	CCANNNNNNNNNTGG	1 cut(s)	261
XmiI	GTMKAC	2 cut(s)	270, 297
XspI	CTAG	2 cut(s)	72, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.