Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002351

Physical Location & Seq

Genomic Coordinates Forward (+)

5888752 .. 5890925

Gene Structure 2174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG075300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

ATGGTTCCATCTCTAATCGAGTTCACGACTTCCTCAAATCCACCAAACTCCGAACTCCAAATTAAGCTAAGCCCATCAATTCAGACCGTTGTGGATGAATTCCACAAGGAAAACCCCAAACTCTCTCCCTTGATTCAACAATTCTACCAACCAATGCAAGCTCGGGTCGACCCGCCTCTCGAATCCATCTGGGTCTACACCGCATTGACATTTCGGAGCCGGAACCACCCAAAAGGCGACATCTTGGACCGAATCGCCGCCGCAAAGGACTTGTTTCAGCTGCTCTCCTCTTGCTCAGCTCCCTGCGGTTCCTCAAAGAGCGTCGCGCTGCTCGCTCCGGTGGTGCGGTTGGCACACGACGTCGTTTTGGATTTGTTTAAGAGGGACTTGGCGTTGAAGAAAGAGAAGAAAGTGATGAAGGAGGTGAAGAATTTGGTGGGAGTGATTCTGGGGTTTATAAATGTGTGCTGTTCTAGCAGGGATTCGGGTCAGGAGGAACCTTTGATTGATTCGAGTTCGGGTTGGTCTTTTTCGGGTTTAAGTTGTGTTTGGTTGGACAGAGATGAGAATGTTAGGAATTTGTTACCTTTAGCGAGTGAAGAGGTGATTGGTGGGCTTAGTGAGAGAGATGGGGATGTGAGTTACTTGGCTGGAGTTGTTATGGCAGAGGTTTTTTTGTTGAGACTGTGCTTGAATTGCAAAGCTGGGACTTCAGGGGAGGTGTTGGAGACAGAGTTGAGGACTTGGGCTGTTGGTTCCATTACTGGGTTCCAGAATGTTTACGTTTTCGAGGTCCTTTTGAGGATGTTGCTGGAGAAGACTTTGCCTGTTACCTCCGTTTTGAGTTCTGAAGACGAAGTTTTGTTGAGGAAAGCACTGTATGATGCCATCATATTGGTCGAATATTCTTTCCTTAATCCTGAGAAAGCAATTCACATATCTTCTGAGCACATGAAAATGATTGCCATGAGAAGATTGATTCTTGCCCATGAAGCAGTGGAGTATTTTAGGGAGCATGGTGATCAAAGGAGAAGCATCTCTTTTACTACTGCATTTTCCAGTTCACAATTGTATTCCCAAGTGGTTAAATGGGTAAAGAGTCAGATTCCTGTGGAGGATAGCTCGGTCAAATCAAAGGGAACCTCACCCAAAGCTCTTATAAAATGGCTTCTTAACCTCGAGCGTCGAGGCTTCTTAGTGTTTGGTGATAGTATCTTGAAGTATCATAGTCTTGATATGTCTAAACCACCAGCTTCGAAGTTAGACAGCAATGAAGTTGATGAAGACCCTATCTTTTACATCGATAACAAGAGGCAAGGAGAACATACAGATGATGGAGAAGTTAATGAATACATTAGTGCTGCATTTTTAGCTGCTGCCAATACAATGACATCAGCGGAGAAAAGAGGGAAAAAACGGAAAGGGGAAAGCAGCGAGAGTGAAGAGGAGAGTTCACTCTCTGATGAGGACTCGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

492

Amino Acids

54.89

Weight (kDa)

5.32

Isoelectric Point (pI)

51.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11780
fragaria_vesca	FvH4_1g07060
malus_domestica	MD02G1074500.v1.1
prunus_persica	Prupe.7G213400_v2.0.a1
pyrus_communis	pycom02g05890 pycom15g18070
rosa_chinensis	RchiOBHm_Chr2g0092961 RchiOBHm_Chr4g0406051 RchiOBHm_Chr4g0425381
rosa_laevigata	RLG00000008045 RLG00000016353 RLG00000020789 RLG00000033390
rosa_multiflora	Rmu_co8270331.1_g000001 Rmu_sc0000596.1_g000010 Rmu_sc0000965.1_g000017 Rmu_sc0002862.1_g000003 Rmu_sc0002882.1_g000032 Rmu_sc0003902.1_g000018 Rmu_sc0006662.1_g000006 Rmu_sc0010963.1_g000006 Rmu_sc0012535.1_g000006
rosa_roxburghii	Rroxscaffold_2G00148670
rosa_rugosa	Rorug02G0030700
rosa_samantha	Rh1DG034900 Rh2AG076700 Rh2BG078000 Rh2CG080200 Rh2DG075300 Rh2DG566700 Rh3BG038800 Rh3CG266800 Rh3DG038000 Rh3DG262900 Rh6AG284700 Rh6BG048400 Rh6BG286100 Rh6CG287100 Rh7AG478700
rosa_wichuraiana	Rw2G006950 Rw3G003880 Rw3G021260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	458, 1160
AatII	GACGTC	1 cut(s)	363
AccI	GTMKAC	2 cut(s)	168, 195
AccII	CGCG	1 cut(s)	326
AciI	CCGC	7 cut(s)	173, 201, 258, 261, 306, 346, 1397
AcsI	RAATTY	3 cut(s)	98, 430, 577
AcuI	CTGAAG	2 cut(s)	696, 870
AcyI	GRCGYC	1 cut(s)	360
AfiI	CCNNNNNNNGG	1 cut(s)	765
AgsI	TTSAA	4 cut(s)	137, 397, 694, 1219
AjuI	GAANNNNNNNTTGG	2 cut(s)	591, 623
AluBI	AGCT	9 cut(s)	67, 161, 280, 299, 704, 1122, 1154, 1253, 1373
AluI	AGCT	9 cut(s)	67, 161, 280, 299, 704, 1122, 1154, 1253, 1373
Alw21I	GWGCWC	1 cut(s)	951
Alw26I	GTCTC	2 cut(s)	676, 722
Ama87I	CYCGRG	2 cut(s)	162, 1178
ApeKI	GCWGC	6 cut(s)	280, 328, 1361, 1373, 1376, 1431
ApoI	RAATTY	3 cut(s)	98, 430, 577
AspLEI	GCGC	1 cut(s)	328
AspS9I	GGNCC	2 cut(s)	247, 793
AsuHPI	GGTGA	5 cut(s)	436, 616, 1031, 1137, 1217
AsuII	TTCGAA	1 cut(s)	1256
AvaI	CYCGRG	2 cut(s)	162, 1178
AvaII	GGWCC	2 cut(s)	247, 793
BbsI	GAAGAC	3 cut(s)	824, 858, 1290
Bbv12I	GWGCWC	1 cut(s)	951
BbvI	GCAGC	6 cut(s)	267, 315, 1348, 1360, 1363, 1443
BccI	CCATC	6 cut(s)	16, 82, 194, 623, 896, 1328
BclI	TGATCA	1 cut(s)	1021
BcoDI	GTCTC	2 cut(s)	676, 722
BfaI	CTAG	1 cut(s)	474
BisI	GCNGC	8 cut(s)	258, 261, 281, 329, 1362, 1374, 1377, 1432
BlpI	GCTNAGC	2 cut(s)	68, 295
BlsI	GCNGC	8 cut(s)	259, 262, 282, 330, 1363, 1375, 1378, 1433
Bme18I	GGWCC	2 cut(s)	247, 793
BmeT110I	CYCGRG	2 cut(s)	162, 1178
BmgT120I	GGNCC	2 cut(s)	247, 793
BmiI	GGNNCC	8 cut(s)	6, 218, 224, 310, 498, 757, 770, 1141
BmrI	ACTGGG	1 cut(s)	774
BmsI	GCATC	2 cut(s)	874, 1044
BmuI	ACTGGG	1 cut(s)	774
BpiI	GAAGAC	3 cut(s)	824, 858, 1290
BplI	GAGNNNNNCTC	2 cut(s)	1106, 1138
BpmI	CTGGAG	2 cut(s)	672, 833
Bpu1102I	GCTNAGC	2 cut(s)	68, 295
Bpu14I	TTCGAA	1 cut(s)	1256
Bsa29I	ATCGAT	1 cut(s)	1302
BsaHI	GRCGYC	1 cut(s)	360
BsaWI	WCCGGW	1 cut(s)	337
BsaXI	ACNNNNNCTCC	2 cut(s)	719, 749
Bsc4I	CCNNNNNNNGG	1 cut(s)	765
Bse1I	ACTGG	2 cut(s)	769, 1059
Bse3DI	GCAATG	1 cut(s)	1276
BseCI	ATCGAT	1 cut(s)	1302
BseGI	GGATG	3 cut(s)	100, 640, 810
BseLI	CCNNNNNNNGG	1 cut(s)	765
BseMI	GCAATG	1 cut(s)	1276
BseMII	CTCAG	3 cut(s)	309, 912, 936
BseNI	ACTGG	2 cut(s)	769, 1059
BseRI	GAGGAG	2 cut(s)	277, 1460
BseXI	GCAGC	6 cut(s)	267, 315, 1348, 1360, 1363, 1443
BseYI	CCCAGC	1 cut(s)	704
Bsh1236I	CGCG	1 cut(s)	326
BshVI	ATCGAT	1 cut(s)	1302
BsiHKAI	GWGCWC	1 cut(s)	951
BsiHKCI	CYCGRG	2 cut(s)	162, 1178
BsiSI	CCGG	2 cut(s)	220, 338
BslFI	GGGAC	2 cut(s)	398, 721
BslI	CCNNNNNNNGG	1 cut(s)	765
BsmAI	GTCTC	2 cut(s)	676, 722
BsmFI	GGGAC	2 cut(s)	398, 721
BsoBI	CYCGRG	2 cut(s)	162, 1178
Bsp119I	TTCGAA	1 cut(s)	1256
Bsp1286I	GDGCHC	1 cut(s)	951
Bsp143I	GATC	1 cut(s)	1021
Bsp1720I	GCTNAGC	2 cut(s)	68, 295
BspACI	CCGC	7 cut(s)	173, 201, 258, 261, 306, 346, 1397
BspCNI	CTCAG	3 cut(s)	308, 913, 937
BspDI	ATCGAT	1 cut(s)	1302
BspFNI	CGCG	1 cut(s)	326
BspLI	GGNNCC	8 cut(s)	6, 218, 224, 310, 498, 757, 770, 1141
BspT104I	TTCGAA	1 cut(s)	1256
BsrDI	GCAATG	1 cut(s)	1276
BsrI	ACTGG	2 cut(s)	769, 1059
BssMI	GATC	1 cut(s)	1021
BssNI	GRCGYC	1 cut(s)	360
Bst4CI	ACNGT	3 cut(s)	88, 687, 879
Bst6I	CTCTTC	2 cut(s)	594, 1437
BstACI	GRCGYC	1 cut(s)	360
BstBI	TTCGAA	1 cut(s)	1256
BstC8I	GCNNGC	2 cut(s)	159, 333
BstDEI	CTNAG	6 cut(s)	68, 295, 617, 921, 945, 1195
BstF5I	GGATG	3 cut(s)	100, 640, 810
BstFNI	CGCG	1 cut(s)	326
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	1 cut(s)	1024
BstMAI	GTCTC	2 cut(s)	676, 722
BstMBI	GATC	1 cut(s)	1021
BstMWI	GCNNNNNNNGC	5 cut(s)	332, 474, 696, 992, 1370
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	6 cut(s)	267, 315, 1348, 1360, 1363, 1443
BstV2I	GAAGAC	3 cut(s)	824, 858, 1290
BstXI	CCANNNNNNTGG	1 cut(s)	895
Bsu15I	ATCGAT	1 cut(s)	1302
BsuTUI	ATCGAT	1 cut(s)	1302
BtsCI	GGATG	3 cut(s)	100, 640, 810
BtsI	GCAGTG	1 cut(s)	1002
BtsIMutI	CAGTG	2 cut(s)	875, 1002
Cac8I	GCNNGC	2 cut(s)	159, 333
CfoI	GCGC	1 cut(s)	328
Cfr13I	GGNCC	2 cut(s)	247, 793
ClaI	ATCGAT	1 cut(s)	1302
CseI	GACGC	2 cut(s)	310, 1172
CviAII	CATG	4 cut(s)	952, 967, 989, 1016
DdeI	CTNAG	6 cut(s)	68, 295, 617, 921, 945, 1195
DpnI	GATC	1 cut(s)	1023
DpnII	GATC	1 cut(s)	1021
Eam1104I	CTCTTC	2 cut(s)	594, 1437
EarI	CTCTTC	2 cut(s)	594, 1437
Eco47I	GGWCC	2 cut(s)	247, 793
Eco57I	CTGAAG	2 cut(s)	696, 870
Eco88I	CYCGRG	2 cut(s)	162, 1178
EcoO109I	RGGNCCY	1 cut(s)	793
EcoRI	GAATTC	1 cut(s)	98
FaeI	CATG	4 cut(s)	955, 970, 992, 1019
FalI	AAGNNNNNCTT	4 cut(s)	371, 403, 1024, 1056
FaqI	GGGAC	2 cut(s)	398, 721
FatI	CATG	4 cut(s)	951, 966, 988, 1015
FauI	CCCGC	1 cut(s)	180
FbaI	TGATCA	1 cut(s)	1021
FblI	GTMKAC	2 cut(s)	168, 195
Fnu4HI	GCNGC	8 cut(s)	258, 261, 281, 329, 1362, 1374, 1377, 1432
FokI	GGATG	3 cut(s)	107, 647, 817
Fsp4HI	GCNGC	8 cut(s)	258, 261, 281, 329, 1362, 1374, 1377, 1432
FspBI	CTAG	1 cut(s)	474
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	8 cut(s)	258, 261, 281, 329, 1362, 1374, 1377, 1432
GsaI	CCCAGC	1 cut(s)	708
GsuI	CTGGAG	2 cut(s)	672, 833
HapII	CCGG	2 cut(s)	220, 338
HgaI	GACGC	2 cut(s)	310, 1172
HhaI	GCGC	1 cut(s)	328
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	4 cut(s)	955, 970, 992, 1019
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HpaII	CCGG	2 cut(s)	220, 338
HphI	GGTGA	5 cut(s)	436, 616, 1031, 1137, 1217
Hpy166II	GTNNAC	6 cut(s)	24, 169, 196, 781, 1064, 1454
Hpy188I	TCNGA	8 cut(s)	52, 84, 216, 850, 946, 1104, 1462, 1474
Hpy188III	TCNNGA	7 cut(s)	25, 179, 491, 772, 920, 1216, 1232
Hpy8I	GTNNAC	6 cut(s)	24, 169, 196, 781, 1064, 1454
Hpy99I	CGWCG	4 cut(s)	326, 362, 365, 1188
HpyAV	CCTTC	1 cut(s)	412
HpyCH4III	ACNGT	3 cut(s)	88, 687, 879
HpyCH4IV	ACGT	2 cut(s)	360, 783
HpyCH4V	TGCA	4 cut(s)	157, 699, 1052, 1364
HpyF10VI	GCNNNNNNNGC	5 cut(s)	332, 474, 696, 992, 1370
HpyF3I	CTNAG	6 cut(s)	68, 295, 617, 921, 945, 1195
HpySE526I	ACGT	2 cut(s)	360, 783
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	4 cut(s)	955, 970, 992, 1019
HspAI	GCGC	1 cut(s)	326
Ksp22I	TGATCA	1 cut(s)	1021
Kzo9I	GATC	1 cut(s)	1021
LmnI	GCTCC	4 cut(s)	216, 304, 340, 1012
Lsp1109I	GCAGC	6 cut(s)	267, 315, 1348, 1360, 1363, 1443
LweI	GCATC	2 cut(s)	874, 1044
MaeI	CTAG	1 cut(s)	474
MaeII	ACGT	2 cut(s)	360, 783
MaeIII	GTNAC	3 cut(s)	582, 641, 829
MalI	GATC	1 cut(s)	1023
MboI	GATC	1 cut(s)	1021
MfeI	CAATTG	1 cut(s)	1067
MhlI	GDGCHC	1 cut(s)	951
MluCI	AATT	9 cut(s)	60, 78, 98, 140, 430, 577, 694, 930, 1067
MlyI	GAGTC	2 cut(s)	1108, 1463
MmeI	TCCRAC	2 cut(s)	534, 705
MseI	TTAA	7 cut(s)	63, 378, 539, 915, 1086, 1173, 1344
MslI	CAYNNNNRTG	2 cut(s)	956, 1329
MspA1I	CMGCKG	2 cut(s)	280, 1397
MspI	CCGG	2 cut(s)	220, 338
MunI	CAATTG	1 cut(s)	1067
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	5 cut(s)	332, 474, 696, 992, 1370
NdeII	GATC	1 cut(s)	1021
NlaIII	CATG	4 cut(s)	955, 970, 992, 1019
NlaIV	GGNNCC	8 cut(s)	6, 218, 224, 310, 498, 757, 770, 1141
NspV	TTCGAA	1 cut(s)	1256
PaeR7I	CTCGAG	1 cut(s)	1178
PfeI	GAWTC	8 cut(s)	133, 182, 252, 445, 482, 509, 979, 1105
PkrI	GCNGC	8 cut(s)	259, 262, 282, 330, 1363, 1375, 1378, 1433
PleI	GAGTC	2 cut(s)	1107, 1463
PpsI	GAGTC	2 cut(s)	1107, 1463
PpuMI	RGGWCCY	1 cut(s)	793
PsiI	TTATAA	2 cut(s)	458, 1160
Psp5II	RGGWCCY	1 cut(s)	793
PspFI	CCCAGC	1 cut(s)	704
PspN4I	GGNNCC	8 cut(s)	6, 218, 224, 310, 498, 757, 770, 1141
PspPI	GGNCC	2 cut(s)	247, 793
PspPPI	RGGWCCY	1 cut(s)	793
PspXI	VCTCGAGB	1 cut(s)	1178
PvuII	CAGCTG	1 cut(s)	280
RseI	CAYNNNNRTG	2 cut(s)	956, 1329
SalI	GTCGAC	1 cut(s)	167
SaqAI	TTAA	7 cut(s)	63, 378, 539, 915, 1086, 1173, 1344
SatI	GCNGC	8 cut(s)	258, 261, 281, 329, 1362, 1374, 1377, 1432
Sau3AI	GATC	1 cut(s)	1021
Sau96I	GGNCC	2 cut(s)	247, 793
SchI	GAGTC	2 cut(s)	1108, 1463
SduI	GDGCHC	1 cut(s)	951
SfaNI	GCATC	2 cut(s)	874, 1044
Sfr274I	CTCGAG	1 cut(s)	1178
SfuI	TTCGAA	1 cut(s)	1256
SinI	GGWCC	2 cut(s)	247, 793
SlaI	CTCGAG	1 cut(s)	1178
SmiMI	CAYNNNNRTG	2 cut(s)	956, 1329
SmlI	CTYRAG	1 cut(s)	1178
SmoI	CTYRAG	1 cut(s)	1178
Sse9I	AATT	9 cut(s)	60, 78, 98, 140, 430, 577, 694, 930, 1067
SsiI	CCGC	7 cut(s)	173, 201, 258, 261, 306, 346, 1397
SspI	AATATT	1 cut(s)	905
SspMI	CTAG	1 cut(s)	474
TaaI	ACNGT	3 cut(s)	88, 687, 879
TaiI	ACGT	2 cut(s)	363, 786
TaqII	GACCGA	2 cut(s)	264, 1114
TasI	AATT	9 cut(s)	60, 78, 98, 140, 430, 577, 694, 930, 1067
TauI	GCSGC	2 cut(s)	260, 263
TfiI	GAWTC	8 cut(s)	133, 182, 252, 445, 482, 509, 979, 1105
Tru1I	TTAA	7 cut(s)	63, 378, 539, 915, 1086, 1173, 1344
Tru9I	TTAA	7 cut(s)	63, 378, 539, 915, 1086, 1173, 1344
TscAI	CASTG	2 cut(s)	882, 1002
TseI	GCWGC	6 cut(s)	280, 328, 1361, 1373, 1376, 1431
TspDTI	ATGAA	7 cut(s)	111, 431, 968, 1005, 1287, 1296, 1362
TspGWI	ACGGA	2 cut(s)	826, 1432
TspRI	CASTG	2 cut(s)	882, 1002
VpaK11BI	GGWCC	2 cut(s)	247, 793
XapI	RAATTY	3 cut(s)	98, 430, 577
XhoI	CTCGAG	1 cut(s)	1178
XmiI	GTMKAC	2 cut(s)	168, 195
XspI	CTAG	1 cut(s)	474
ZraI	GACGTC	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.