Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002351

Physical Location & Seq

Genomic Coordinates Forward (+)

5206213 .. 5206758

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG034900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCAACAAGGAAGGTTAGGGTTTCCTACAAGCTCAAAAAGGTTAGGGTTTTACTTGTGCTCAGCTCCTACTAGCTCTCACTGCAAATCAAACAGTTTCACCATAGTTCCATCTCTAATCGAGTTCACGACTTCCTCAAATCTACCAAACTCCGAACCCCAAATTAAGCTAAGCCCATCAATTCAGACCGTTGTAGATGAAATCCACAAGGAAAACCCCAAACTCTCTCCCTTGATTCAACAATTCTACAGACCAATGCAATCTCAGGTCGATCCGCCTCTCGAATCCATCTGGGTCTACACCGCATTGACATTTCGGAGCTGGAACCACCCAAAAGGTGACATCTTGGACCGAATAGCTGCCGCAAAGGACTTGTTTCAGCTGCTCTCCTCTTGCTCAGCTCCCTGCGGTTCCTCAAATAGTGTCGCACTGCTCGCTCCGGTGGTGCGGTTGGCACACGACGTCGTTTTGGATTTGTTTAAGAGGGAGTTGGTGTTGAAGAAAGAGAAGAAAGTGATGAAGGAGGTGAAGATTTGGTGGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

20.37

Weight (kDa)

9.08

Isoelectric Point (pI)

48.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11780
fragaria_vesca	FvH4_1g07060
malus_domestica	MD02G1074500.v1.1
prunus_persica	Prupe.7G213400_v2.0.a1
pyrus_communis	pycom02g05890 pycom15g18070
rosa_chinensis	RchiOBHm_Chr2g0092961 RchiOBHm_Chr4g0406051 RchiOBHm_Chr4g0425381
rosa_laevigata	RLG00000008045 RLG00000016353 RLG00000020789 RLG00000033390
rosa_multiflora	Rmu_co8270331.1_g000001 Rmu_sc0000596.1_g000010 Rmu_sc0000965.1_g000017 Rmu_sc0002862.1_g000003 Rmu_sc0002882.1_g000032 Rmu_sc0003902.1_g000018 Rmu_sc0006662.1_g000006 Rmu_sc0010963.1_g000006 Rmu_sc0012535.1_g000006
rosa_roxburghii	Rroxscaffold_2G00148670
rosa_rugosa	Rorug02G0030700
rosa_samantha	Rh1DG034900 Rh2AG076700 Rh2BG078000 Rh2CG080200 Rh2DG075300 Rh2DG566700 Rh3BG038800 Rh3CG266800 Rh3DG038000 Rh3DG262900 Rh6AG284700 Rh6BG048400 Rh6BG286100 Rh6CG287100 Rh7AG478700
rosa_wichuraiana	Rw2G006950 Rw3G003880 Rw3G021260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	465
AccI	GTMKAC	1 cut(s)	297
AciI	CCGC	5 cut(s)	275, 303, 363, 408, 448
AclWI	GGATC	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	462
AgsI	TTSAA	2 cut(s)	239, 499
AluBI	AGCT	8 cut(s)	33, 65, 75, 169, 321, 359, 382, 401
AluI	AGCT	8 cut(s)	33, 65, 75, 169, 321, 359, 382, 401
Alw21I	GWGCWC	1 cut(s)	62
AlwI	GGATC	1 cut(s)	266
ApeKI	GCWGC	2 cut(s)	359, 382
AspS9I	GGNCC	1 cut(s)	349
AsuHPI	GGTGA	3 cut(s)	91, 350, 538
AvaII	GGWCC	1 cut(s)	349
Bbv12I	GWGCWC	1 cut(s)	62
BbvI	GCAGC	2 cut(s)	346, 369
BccI	CCATC	3 cut(s)	118, 184, 296
BfaI	CTAG	1 cut(s)	72
BfmI	CTRYAG	1 cut(s)	247
BisI	GCNGC	3 cut(s)	360, 363, 383
BlpI	GCTNAGC	3 cut(s)	61, 170, 397
BlsI	GCNGC	3 cut(s)	361, 364, 384
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	349
BmiI	GGNNCC	2 cut(s)	326, 412
Bpu1102I	GCTNAGC	3 cut(s)	61, 170, 397
BsaHI	GRCGYC	1 cut(s)	462
BsaWI	WCCGGW	1 cut(s)	439
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
BseMII	CTCAG	3 cut(s)	75, 278, 411
BseRI	GAGGAG	1 cut(s)	379
BseXI	GCAGC	2 cut(s)	346, 369
BsiHKAI	GWGCWC	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	440
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp143I	GATC	1 cut(s)	271
Bsp1720I	GCTNAGC	3 cut(s)	61, 170, 397
BspACI	CCGC	5 cut(s)	275, 303, 363, 408, 448
BspCNI	CTCAG	3 cut(s)	74, 277, 410
BspLI	GGNNCC	2 cut(s)	326, 412
BspPI	GGATC	1 cut(s)	266
BssMI	GATC	1 cut(s)	271
BssNI	GRCGYC	1 cut(s)	462
Bst4CI	ACNGT	2 cut(s)	95, 190
BstACI	GRCGYC	1 cut(s)	462
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	4 cut(s)	61, 170, 264, 397
BstKTI	GATC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	2 cut(s)	81, 434
BstSFI	CTRYAG	1 cut(s)	247
BstV1I	GCAGC	2 cut(s)	346, 369
BtsI	GCAGTG	2 cut(s)	79, 428
BtsIMutI	CAGTG	2 cut(s)	79, 428
Cac8I	GCNNGC	1 cut(s)	435
Cfr13I	GGNCC	1 cut(s)	349
CviJI	RGCY	9 cut(s)	33, 65, 75, 169, 174, 321, 359, 382, 401
CviKI_1	RGCY	9 cut(s)	33, 65, 75, 169, 174, 321, 359, 382, 401
DdeI	CTNAG	4 cut(s)	61, 170, 264, 397
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
EciI	GGCGGA	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	349
FaiI	YATR	1 cut(s)	104
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	3 cut(s)	360, 363, 383
Fsp4HI	GCNGC	3 cut(s)	360, 363, 383
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	3 cut(s)	360, 363, 383
HapII	CCGG	1 cut(s)	440
Hin1I	GRCGYC	1 cut(s)	462
HinfI	GANTC	2 cut(s)	235, 284
HpaII	CCGG	1 cut(s)	440
HphI	GGTGA	3 cut(s)	91, 350, 538
Hpy166II	GTNNAC	2 cut(s)	126, 298
Hpy188I	TCNGA	3 cut(s)	154, 186, 318
Hpy188III	TCNNGA	2 cut(s)	127, 281
Hpy8I	GTNNAC	2 cut(s)	126, 298
Hpy99I	CGWCG	2 cut(s)	464, 467
HpyAV	CCTTC	2 cut(s)	6, 514
HpyCH4III	ACNGT	2 cut(s)	95, 190
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	3 cut(s)	4, 84, 259
HpyF10VI	GCNNNNNNNGC	2 cut(s)	81, 434
HpyF3I	CTNAG	4 cut(s)	61, 170, 264, 397
HpySE526I	ACGT	1 cut(s)	462
Hsp92I	GRCGYC	1 cut(s)	462
Kzo9I	GATC	1 cut(s)	271
LmnI	GCTCC	4 cut(s)	70, 318, 406, 442
LpnPI	CCDG	5 cut(s)	251, 277, 307, 418, 453
Lsp1109I	GCAGC	2 cut(s)	346, 369
MaeI	CTAG	1 cut(s)	72
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	3 cut(s)	511, 520, 541
MhlI	GDGCHC	1 cut(s)	62
MluCI	AATT	3 cut(s)	162, 180, 242
MnlI	CCTC	6 cut(s)	145, 288, 400, 424, 477, 517
MseI	TTAA	2 cut(s)	165, 480
MspA1I	CMGCKG	1 cut(s)	382
MspI	CCGG	1 cut(s)	440
MwoI	GCNNNNNNNGC	2 cut(s)	81, 434
NdeII	GATC	1 cut(s)	271
NlaIV	GGNNCC	2 cut(s)	326, 412
NmuCI	GTSAC	1 cut(s)	338
PfeI	GAWTC	2 cut(s)	235, 284
PkrI	GCNGC	3 cut(s)	361, 364, 384
PspN4I	GGNNCC	2 cut(s)	326, 412
PspPI	GGNCC	1 cut(s)	349
PvuII	CAGCTG	1 cut(s)	382
SaqAI	TTAA	2 cut(s)	165, 480
SatI	GCNGC	3 cut(s)	360, 363, 383
Sau3AI	GATC	1 cut(s)	271
Sau96I	GGNCC	1 cut(s)	349
SduI	GDGCHC	1 cut(s)	62
SfcI	CTRYAG	1 cut(s)	247
SinI	GGWCC	1 cut(s)	349
Sse9I	AATT	3 cut(s)	162, 180, 242
SsiI	CCGC	5 cut(s)	275, 303, 363, 408, 448
SspMI	CTAG	1 cut(s)	72
TaaI	ACNGT	2 cut(s)	95, 190
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	3 cut(s)	120, 270, 282
TaqII	GACCGA	1 cut(s)	366
TasI	AATT	3 cut(s)	162, 180, 242
TauI	GCSGC	1 cut(s)	365
TfiI	GAWTC	2 cut(s)	235, 284
Tru1I	TTAA	2 cut(s)	165, 480
Tru9I	TTAA	2 cut(s)	165, 480
TscAI	CASTG	2 cut(s)	86, 435
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	2 cut(s)	359, 382
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	2 cut(s)	213, 533
TspRI	CASTG	2 cut(s)	86, 435
VpaK11BI	GGWCC	1 cut(s)	349
XmiI	GTMKAC	1 cut(s)	297
XspI	CTAG	1 cut(s)	72
ZraI	GACGTC	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.