Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002351

Physical Location & Seq

Genomic Coordinates Forward (+)

3727722 .. 3730341

Gene Structure 2620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g07060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGGTTCCTTCTCTAATGGAATTCACAAATTCCCCAAACTCCGACCCCCAACCATCAATTCAAACAGTCATAGATGAAATCCACAAGGAAAACCCCAATTTCTCTCACTTGATTCAGCAATTCTACCACCCAATGCAATCCCGGCTCGACCCGTCTCTCGAATCCATCTGGGTCTACACCGCATTGACGTTTCGGAGCCGGAACCACCCGAAAGACGACATCTTTGACCGAATCTCCGCCGCGAAGGACCTGTTTCAGCTGCTCTCCTCCTGCTCCGCTCCCTGCGGCGGCGCAAAGAGCGCCGCGCTGCTCGCTCCGGTGGTGCGGTTGGTGCACGACGTCGTTTTGGAGTTGTTTAAGAGGGATTTGGGGTCGAAGAAAGAGAAGAAAACTTTGAAGGAGGTGAAGAGTTTGGTGGGAGTGATTCTGGGGTTTATAAATGTGTGTTGTTGTGATAGGGATTCGGGTTTGATTGATTCGGGTTCGGGTTGGTCTTTTTCGGGTTTGAGCTGTGTTTGGTTGAATAGAAATGAGGGTGTTGGGGATTTGTTGCCTTTGGTGAGTGAGGAGGTGATTGGTGGGGTTAAGGAGAGAGATGGGGATGTGAGTTACTTGGCCGGAGTTGTTATTGCAGAGGTGTTTCTGTTGAAAATGTGCTTGAATTGTAAAGGTGGGACTTCCAGGGAGGAGTTGGAGACAGAGTTGAGGACTTGGGCTGTTGGTTCCTTTACTGGGTTCCAGAGTGTTTACCTTTTCGAGGTCCTTTTGAGGATGCTGCTGGAGAAGACATTGCCTGTTACCTCCCTAGTCAGTTCTGAAGATGAAGTTTTGTTGAGGAAAGTGCTGTATGATGTCATCATATTGGTTGAGTATTCTTTCCTTGATCCCAAGAAAGCAATTCACATAACCGCTGAGCACATGAAAATTATTGCCATGAGAAGATTGATTCTTGCCCATGAAGCAGTGAAGTATTTTAGGGAGCGTGGTGATCAAAGGAGAAGCATCTCTTACACTACTGCATTTTCCAGTTCACAATTTTATTCTCAAATTGTTAAATGGGTAAAGAGTCAGATTCCTGTGGAGGATAGCTCAGTCAAATCAAAGGGATCCTCACCGAAAGCTCTTATAAAATGGCTTCTTAACCTTGAGCGTCAAGGCTTCTTAGTGTTTGGAGATAGCATCTTGAAGTATCATAGTCCTGATATGTCTGAACCACCAGCTTCGAAGTTAGACAGCGATGAAATGGATGATGGCCCTAGCTTTTACATTGATAACAAGAGGCTAGACGATTATACTGATGATGAAAGAGTTAATGAATACATAAGTACGGCATTTTTAACTGCTGCTAATACAATGACATCAGTGGAGAAAAGAGGGAAAAAATGGAAAGGGGAAAACAGTGAGAGTGAAGAGGAGAGTTCACTCTCTGATGAGGACTCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

482

Amino Acids

54.05

Weight (kDa)

5.25

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11780
fragaria_vesca	FvH4_1g07060
malus_domestica	MD02G1074500.v1.1
prunus_persica	Prupe.7G213400_v2.0.a1
pyrus_communis	pycom02g05890 pycom15g18070
rosa_chinensis	RchiOBHm_Chr2g0092961 RchiOBHm_Chr4g0406051 RchiOBHm_Chr4g0425381
rosa_laevigata	RLG00000008045 RLG00000016353 RLG00000020789 RLG00000033390
rosa_multiflora	Rmu_co8270331.1_g000001 Rmu_sc0000596.1_g000010 Rmu_sc0000965.1_g000017 Rmu_sc0002862.1_g000003 Rmu_sc0002882.1_g000032 Rmu_sc0003902.1_g000018 Rmu_sc0006662.1_g000006 Rmu_sc0010963.1_g000006 Rmu_sc0012535.1_g000006
rosa_roxburghii	Rroxscaffold_2G00148670
rosa_rugosa	Rorug02G0030700
rosa_samantha	Rh1DG034900 Rh2AG076700 Rh2BG078000 Rh2CG080200 Rh2DG075300 Rh2DG566700 Rh3BG038800 Rh3CG266800 Rh3DG038000 Rh3DG262900 Rh6AG284700 Rh6BG048400 Rh6BG286100 Rh6CG287100 Rh7AG478700
rosa_wichuraiana	Rw2G006950 Rw3G003880 Rw3G021260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	437, 1127
AatII	GACGTC	1 cut(s)	342
AccBSI	CCGCTC	1 cut(s)	278
AccI	GTMKAC	1 cut(s)	174
AccII	CGCG	2 cut(s)	242, 305
AciI	CCGC	9 cut(s)	180, 237, 240, 276, 285, 288, 303, 325, 909
AclWI	GGATC	3 cut(s)	878, 1101, 1114
AcoI	YGGCCR	1 cut(s)	615
AcsI	RAATTY	2 cut(s)	20, 28
AcuI	CTGAAG	1 cut(s)	837
AcyI	GRCGYC	1 cut(s)	339
AfaI	GTAC	1 cut(s)	1327
AfiI	CCNNNNNNNGG	3 cut(s)	287, 732, 757
AgsI	TTSAA	6 cut(s)	62, 397, 523, 649, 661, 1186
AjnI	CCWGG	1 cut(s)	680
AjuI	GAANNNNNNNTTGG	2 cut(s)	42, 74
AluBI	AGCT	6 cut(s)	259, 510, 1089, 1121, 1220, 1260
AluI	AGCT	6 cut(s)	259, 510, 1089, 1121, 1220, 1260
Alw21I	GWGCWC	2 cut(s)	336, 918
Alw26I	GTCTC	2 cut(s)	159, 689
Alw44I	GTGCAC	1 cut(s)	332
AlwI	GGATC	3 cut(s)	878, 1101, 1114
AoxI	GGCC	2 cut(s)	615, 1252
ApaLI	GTGCAC	1 cut(s)	332
ApeKI	GCWGC	4 cut(s)	259, 307, 775, 1343
ApoI	RAATTY	2 cut(s)	20, 28
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
AspLEI	GCGC	3 cut(s)	293, 302, 307
AspS9I	GGNCC	3 cut(s)	247, 760, 1253
AsuC2I	CCSGG	1 cut(s)	142
AsuHPI	GGTGA	5 cut(s)	415, 571, 583, 998, 1104
AsuII	TTCGAA	1 cut(s)	1223
AvaII	GGWCC	2 cut(s)	247, 760
BaeGI	GKGCMC	1 cut(s)	336
BamHI	GGATCC	1 cut(s)	1106
BbsI	GAAGAC	1 cut(s)	791
Bbv12I	GWGCWC	2 cut(s)	336, 918
BbvI	GCAGC	4 cut(s)	246, 294, 762, 1330
BccI	CCATC	4 cut(s)	61, 173, 590, 1244
BceAI	ACGGC	1 cut(s)	1344
BciT130I	CCWGG	1 cut(s)	682
BclI	TGATCA	1 cut(s)	988
BcnI	CCSGG	1 cut(s)	142
BcoDI	GTCTC	2 cut(s)	159, 689
BfaI	CTAG	3 cut(s)	806, 1257, 1283
BfoI	RGCGCY	1 cut(s)	303
BisI	GCNGC	8 cut(s)	240, 260, 286, 289, 303, 308, 776, 1344
BlpI	GCTNAGC	1 cut(s)	912
BlsI	GCNGC	8 cut(s)	241, 261, 287, 290, 304, 309, 777, 1345
Bme1390I	CCNGG	2 cut(s)	142, 682
Bme18I	GGWCC	2 cut(s)	247, 760
BmgT120I	GGNCC	3 cut(s)	247, 760, 1253
BmiI	GGNNCC	6 cut(s)	6, 197, 203, 724, 737, 1108
BmrFI	CCNGG	2 cut(s)	142, 682
BmrI	ACTGGG	1 cut(s)	741
BmsI	GCATC	3 cut(s)	762, 1011, 1188
BmuI	ACTGGG	1 cut(s)	741
BpiI	GAAGAC	1 cut(s)	791
BplI	GAGNNNNNCTC	2 cut(s)	1073, 1105
BpmI	CTGGAG	1 cut(s)	800
Bpu1102I	GCTNAGC	1 cut(s)	912
Bpu14I	TTCGAA	1 cut(s)	1223
BpuEI	CTTGAG	1 cut(s)	1166
BpuMI	CCSGG	1 cut(s)	142
BsaHI	GRCGYC	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	681
BsaWI	WCCGGW	1 cut(s)	316
BsaXI	ACNNNNNCTCC	4 cut(s)	218, 248, 686, 716
Bsc4I	CCNNNNNNNGG	3 cut(s)	287, 732, 757
Bse1I	ACTGG	2 cut(s)	736, 1026
Bse3DI	GCAATG	1 cut(s)	788
BseBI	CCWGG	1 cut(s)	682
BseDI	CCNNGG	1 cut(s)	681
BseGI	GGATG	3 cut(s)	607, 777, 1252
BseLI	CCNNNNNNNGG	3 cut(s)	287, 732, 757
BseMI	GCAATG	1 cut(s)	788
BseMII	CTCAG	2 cut(s)	903, 1104
BseNI	ACTGG	2 cut(s)	736, 1026
BseRI	GAGGAG	4 cut(s)	256, 581, 701, 1427
BseSI	GKGCMC	1 cut(s)	336
BseXI	GCAGC	4 cut(s)	246, 294, 762, 1330
Bsh1236I	CGCG	2 cut(s)	242, 305
BshFI	GGCC	2 cut(s)	617, 1254
BsiHKAI	GWGCWC	2 cut(s)	336, 918
BsiSI	CCGG	4 cut(s)	142, 199, 317, 618
BslFI	GGGAC	1 cut(s)	688
BslI	CCNNNNNNNGG	3 cut(s)	287, 732, 757
BsmAI	GTCTC	2 cut(s)	159, 689
BsmBI	CGTCTC	1 cut(s)	159
BsmFI	GGGAC	1 cut(s)	688
BsnI	GGCC	2 cut(s)	617, 1254
Bsp119I	TTCGAA	1 cut(s)	1223
Bsp1286I	GDGCHC	2 cut(s)	336, 918
Bsp143I	GATC	3 cut(s)	883, 988, 1106
Bsp1720I	GCTNAGC	1 cut(s)	912
BspACI	CCGC	9 cut(s)	180, 237, 240, 276, 285, 288, 303, 325, 909
BspANI	GGCC	2 cut(s)	617, 1254
BspCNI	CTCAG	2 cut(s)	904, 1103
BspFNI	CGCG	2 cut(s)	242, 305
BspLI	GGNNCC	6 cut(s)	6, 197, 203, 724, 737, 1108
BspPI	GGATC	3 cut(s)	878, 1101, 1114
BspT104I	TTCGAA	1 cut(s)	1223
BsrBI	CCGCTC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	788
BsrI	ACTGG	2 cut(s)	736, 1026
BssECI	CCNNGG	1 cut(s)	681
BssMI	GATC	3 cut(s)	883, 988, 1106
BssNI	GRCGYC	1 cut(s)	339
Bst2UI	CCWGG	1 cut(s)	682
Bst4CI	ACNGT	2 cut(s)	67, 1400
Bst6I	CTCTTC	2 cut(s)	401, 1404
BstACI	GRCGYC	1 cut(s)	339
BstBI	TTCGAA	1 cut(s)	1223
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	4 cut(s)	912, 1090, 1162, 1438
BstENI	CCTNNNNNAGG	1 cut(s)	755
BstF5I	GGATG	3 cut(s)	607, 777, 1252
BstFNI	CGCG	2 cut(s)	242, 305
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	3 cut(s)	293, 302, 307
BstKTI	GATC	3 cut(s)	886, 991, 1109
BstMAI	GTCTC	2 cut(s)	159, 689
BstMBI	GATC	3 cut(s)	883, 988, 1106
BstMWI	GCNNNNNNNGC	6 cut(s)	142, 297, 299, 311, 331, 959
BstNI	CCWGG	1 cut(s)	682
BstSCI	CCNGG	2 cut(s)	140, 680
BstSLI	GKGCMC	1 cut(s)	336
BstUI	CGCG	2 cut(s)	242, 305
BstV1I	GCAGC	4 cut(s)	246, 294, 762, 1330
BstV2I	GAAGAC	1 cut(s)	791
BstX2I	RGATCY	1 cut(s)	1106
BstYI	RGATCY	1 cut(s)	1106
BsuRI	GGCC	2 cut(s)	617, 1254
BtgZI	GCGATG	1 cut(s)	1251
BtsCI	GGATG	3 cut(s)	607, 777, 1252
BtsI	GCAGTG	1 cut(s)	969
BtsIMutI	CAGTG	3 cut(s)	969, 1368, 1405
Cac8I	GCNNGC	1 cut(s)	312
CfoI	GCGC	3 cut(s)	293, 302, 307
Cfr13I	GGNCC	3 cut(s)	247, 760, 1253
CseI	GACGC	1 cut(s)	1139
Csp6I	GTAC	1 cut(s)	1326
CviAII	CATG	3 cut(s)	919, 934, 956
CviQI	GTAC	1 cut(s)	1326
DdeI	CTNAG	4 cut(s)	912, 1090, 1162, 1438
DpnI	GATC	3 cut(s)	885, 990, 1108
DpnII	GATC	3 cut(s)	883, 988, 1106
EaeI	YGGCCR	1 cut(s)	615
Eam1104I	CTCTTC	2 cut(s)	401, 1404
EarI	CTCTTC	2 cut(s)	401, 1404
EciI	GGCGGA	1 cut(s)	226
Eco47I	GGWCC	2 cut(s)	247, 760
Eco57I	CTGAAG	1 cut(s)	837
EcoNI	CCTNNNNNAGG	1 cut(s)	755
EcoO109I	RGGNCCY	2 cut(s)	247, 760
EcoRI	GAATTC	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	680
Esp3I	CGTCTC	1 cut(s)	159
FaeI	CATG	3 cut(s)	922, 937, 959
FalI	AAGNNNNNCTT	2 cut(s)	991, 1023
FaqI	GGGAC	1 cut(s)	688
FatI	CATG	3 cut(s)	918, 933, 955
FbaI	TGATCA	1 cut(s)	988
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	8 cut(s)	240, 260, 286, 289, 303, 308, 776, 1344
FokI	GGATG	3 cut(s)	614, 784, 1259
Fsp4HI	GCNGC	8 cut(s)	240, 260, 286, 289, 303, 308, 776, 1344
FspBI	CTAG	3 cut(s)	806, 1257, 1283
GlaI	GCGC	3 cut(s)	292, 301, 306
GluI	GCNGC	8 cut(s)	240, 260, 286, 289, 303, 308, 776, 1344
GsuI	CTGGAG	1 cut(s)	800
HaeII	RGCGCY	1 cut(s)	303
HaeIII	GGCC	2 cut(s)	617, 1254
HapII	CCGG	4 cut(s)	142, 199, 317, 618
HgaI	GACGC	1 cut(s)	1139
HhaI	GCGC	3 cut(s)	293, 302, 307
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	3 cut(s)	922, 937, 959
Hin6I	GCGC	3 cut(s)	291, 300, 305
HinP1I	GCGC	3 cut(s)	291, 300, 305
HpaII	CCGG	4 cut(s)	142, 199, 317, 618
HphI	GGTGA	5 cut(s)	415, 571, 583, 998, 1104
Hpy166II	GTNNAC	5 cut(s)	175, 334, 748, 1031, 1421
Hpy188I	TCNGA	7 cut(s)	43, 195, 817, 1071, 1210, 1429, 1441
Hpy188III	TCNNGA	4 cut(s)	158, 739, 1183, 1199
Hpy8I	GTNNAC	5 cut(s)	175, 334, 748, 1031, 1421
Hpy99I	CGWCG	2 cut(s)	341, 344
HpyAV	CCTTC	3 cut(s)	18, 238, 391
HpyCH4III	ACNGT	2 cut(s)	67, 1400
HpyCH4IV	ACGT	2 cut(s)	188, 339
HpyCH4V	TGCA	4 cut(s)	136, 334, 632, 1019
HpyF10VI	GCNNNNNNNGC	6 cut(s)	142, 297, 299, 311, 331, 959
HpyF3I	CTNAG	4 cut(s)	912, 1090, 1162, 1438
HpySE526I	ACGT	2 cut(s)	188, 339
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	3 cut(s)	922, 937, 959
HspAI	GCGC	3 cut(s)	291, 300, 305
Ksp22I	TGATCA	1 cut(s)	988
Kzo9I	GATC	3 cut(s)	883, 988, 1106
LmnI	GCTCC	5 cut(s)	195, 278, 283, 319, 979
Lsp1109I	GCAGC	4 cut(s)	246, 294, 762, 1330
LweI	GCATC	3 cut(s)	762, 1011, 1188
MaeI	CTAG	3 cut(s)	806, 1257, 1283
MaeII	ACGT	2 cut(s)	188, 339
MaeIII	GTNAC	2 cut(s)	608, 796
MalI	GATC	3 cut(s)	885, 990, 1108
MbiI	CCGCTC	1 cut(s)	278
MboI	GATC	3 cut(s)	883, 988, 1106
MboII	GAAGA	7 cut(s)	388, 397, 418, 796, 830, 951, 1421
MflI	RGATCY	1 cut(s)	1106
MhlI	GDGCHC	2 cut(s)	336, 918
MlyI	GAGTC	2 cut(s)	1075, 1430
MmeI	TCCRAC	2 cut(s)	66, 672
MseI	TTAA	6 cut(s)	357, 585, 1053, 1140, 1311, 1337
MspA1I	CMGCKG	2 cut(s)	259, 911
MspI	CCGG	4 cut(s)	142, 199, 317, 618
MspR9I	CCNGG	2 cut(s)	142, 682
MteI	GCGCNGCGC	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	682
MvnI	CGCG	2 cut(s)	242, 305
MwoI	GCNNNNNNNGC	6 cut(s)	142, 297, 299, 311, 331, 959
NciI	CCSGG	1 cut(s)	142
NdeII	GATC	3 cut(s)	883, 988, 1106
NlaIII	CATG	3 cut(s)	922, 937, 959
NlaIV	GGNNCC	6 cut(s)	6, 197, 203, 724, 737, 1108
NspV	TTCGAA	1 cut(s)	1223
PfeI	GAWTC	8 cut(s)	112, 161, 231, 424, 461, 476, 946, 1072
PkrI	GCNGC	8 cut(s)	241, 261, 287, 290, 304, 309, 777, 1345
PleI	GAGTC	2 cut(s)	1074, 1430
PpsI	GAGTC	2 cut(s)	1074, 1430
PpuMI	RGGWCCY	2 cut(s)	247, 760
PsiI	TTATAA	2 cut(s)	437, 1127
Psp5II	RGGWCCY	2 cut(s)	247, 760
Psp6I	CCWGG	1 cut(s)	680
PspGI	CCWGG	1 cut(s)	680
PspN4I	GGNNCC	6 cut(s)	6, 197, 203, 724, 737, 1108
PspPI	GGNCC	3 cut(s)	247, 760, 1253
PspPPI	RGGWCCY	2 cut(s)	247, 760
PsuI	RGATCY	1 cut(s)	1106
PvuII	CAGCTG	1 cut(s)	259
RsaI	GTAC	1 cut(s)	1327
RsaNI	GTAC	1 cut(s)	1326
SaqAI	TTAA	6 cut(s)	357, 585, 1053, 1140, 1311, 1337
SatI	GCNGC	8 cut(s)	240, 260, 286, 289, 303, 308, 776, 1344
Sau3AI	GATC	3 cut(s)	883, 988, 1106
Sau96I	GGNCC	3 cut(s)	247, 760, 1253
SchI	GAGTC	2 cut(s)	1075, 1430
ScrFI	CCNGG	2 cut(s)	142, 682
SduI	GDGCHC	2 cut(s)	336, 918
SfaNI	GCATC	3 cut(s)	762, 1011, 1188
SfuI	TTCGAA	1 cut(s)	1223
SinI	GGWCC	2 cut(s)	247, 760
SmlI	CTYRAG	1 cut(s)	1145
SmoI	CTYRAG	1 cut(s)	1145
SsiI	CCGC	9 cut(s)	180, 237, 240, 276, 285, 288, 303, 325, 909
SspMI	CTAG	3 cut(s)	806, 1257, 1283
StyD4I	CCNGG	2 cut(s)	140, 680
TaaI	ACNGT	2 cut(s)	67, 1400
TaiI	ACGT	2 cut(s)	191, 342
TaqI	TCGA	5 cut(s)	147, 159, 374, 756, 1223
TaqII	GACCGA	1 cut(s)	243
TauI	GCSGC	4 cut(s)	242, 288, 291, 305
TfiI	GAWTC	8 cut(s)	112, 161, 231, 424, 461, 476, 946, 1072
Tru1I	TTAA	6 cut(s)	357, 585, 1053, 1140, 1311, 1337
Tru9I	TTAA	6 cut(s)	357, 585, 1053, 1140, 1311, 1337
TscAI	CASTG	3 cut(s)	969, 1368, 1405
TseI	GCWGC	4 cut(s)	259, 307, 775, 1343
TspDTI	ATGAA	7 cut(s)	90, 837, 935, 972, 1254, 1317, 1329
TspRI	CASTG	3 cut(s)	969, 1368, 1405
VneI	GTGCAC	1 cut(s)	332
VpaK11BI	GGWCC	2 cut(s)	247, 760
XagI	CCTNNNNNAGG	1 cut(s)	755
XapI	RAATTY	2 cut(s)	20, 28
XcmI	CCANNNNNNNNNTGG	1 cut(s)	688
XmiI	GTMKAC	1 cut(s)	174
XspI	CTAG	3 cut(s)	806, 1257, 1283
ZraI	GACGTC	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.