Prupe.7G213400_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
19406379 .. 19409219
2841 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G213400.1

Sequence Viewer

Length: 1626 bp
ATGGCTCTCGCTTTAATCGACTCCAAAAGTTCCTCAATCCCAGCAAACCTAAGCCCTCTGATTGGCGAAAACTACCACCTCAAGTTAACCCAATCAATTCAAAACCTTTTAGTTGAAATTCACAAGGAAAACCCCAAATTCTCCCACTTCATCCAAGTCTTCTACGACCTAATGCAAGCTCAAGTAGACCCACCTCTCGAATCCATCTGGGTCTATGCCGCATTGACGTTTCGTAGCCGTAATCACCCAAAAGAGGACCCTTTGAATCGAATATCAGCCGCAAAAGACTTATTTCAGCTGGTGTCCGCGTGCTCAGCTTCGGTCAGTTCTTTGAAGAGCATCGCATTGCTTGCTCCAGTGGTTTATGAGGTGTACAATGTGGTTGTTGATTTGTTTAAGAGGGACTTGTCATTGAAAGCAGAGAAGAAAGGGATGAAAGCAGTTCAGAATTTGGTAGGAGTGGTTCTTGGTTATGCAAATGTGTGTTCTTGCAAGGATTTGGGTGAGAATGATGGTTCAACTGGTTCAAGTTTGATTACTCCTTTTGCGGATTTAATTCGTGTTTGGATGAACTCAAATGAGGGATCAGAATTTTTCTTACCTTTAGTGAGCAGTGACGTGTTTCGGGGGCTTAGTGAGAGAGAAGGTGATGTGGGTTACTTGGCAGGAGTTGTTATTGCAGAGGTGTTTTTGTTGAAACTGTGCCTGAATTTCAAACTTGGGACTTCAACGAAGGAGTTGGAGATGGAGTTAAGGACTTGGGCCATTGCTTCCATTACCGGATTTCAGAACTTTTACCTTTTTGAGGTGCTTGTGAGGATGCTGCTGGAGAAGACTTTGCCTGTTACCTCCCTTTTGAGTTCTGAAGATGAAGTTTTGTTGAGGCAAGTGCTGTATGATGCCATCATATTGGTTGAGTATTCTTTCCTCAACCCTGAGAGAGTAATTCACTTACCTGCTGAGCGCATGAAAAGTATTGCCATGAAAAGATTGATTGTTACTCATGAAGCAGTGGAGTATTTCAGGGAGCATGGGGATCAGAGGAGAGCCATCTCTTATGTAACTGCATTTTCCAGTTCACAATTATCTTCCCAAATAATTAAATGGGTAAAGAATCAGATTCCTGAGGATGACGGTGCAATCAGATCAAAGGGCACTTCACCTAAAGCTCTTATAAGGTGGCTTCTTAACCTTGAAGATCATGGCTTAAGAGTATTTGATGATAGCATGGAAAACTTTCGTACTAAACTGGTTCATGAGATGTCCAAATCAGACTCTGAGCAACCGGCTTCTAAGTTGGATAGCAAGAAAGTGGATGATGATCTTCTCTTTTACATAGATAACAATGGAGACGAGGAACATGCAGATGAGGAGAATGAAAAGGTGAATGAATCCATGAGTGCTGCATTTGTAGCTGCTGCGCATACAATGACCTCATCAGAAAAAAGAGGAAGAAAACGGAAAGAGGGGAAAACCCCTGAGAAGAAAGAGAAGATAAAATTTGTAAAGTATGACCTTCGTTGTAACTCTGACTCGGCTAGTGGGAGGTCCTCATTCATCAATAATGATAGCCTAAATAGTGGGAGTGAAGTTGAGAATCCCCTCTCTGATGAGGATACAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

542

Amino Acids

60.75

Weight (kDa)

5.39

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1175
Acc16I TGCGCA 1 cut(s) 1422
Acc36I ACCTGC 1 cut(s) 964
AccI GTMKAC 1 cut(s) 186
AccII CGCG 1 cut(s) 308
AciI CCGC 4 cut(s) 219, 279, 306, 548
AclWI GGATC 2 cut(s) 592, 1044
AcsI RAATTY 6 cut(s) 117, 137, 448, 590, 709, 1499
AcuI CTGAAG 1 cut(s) 885
AfaI GTAC 2 cut(s) 374, 1243
AfiI CCNNNNNNNGG 3 cut(s) 62, 253, 805
AflII CTTAAG 1 cut(s) 1207
AflIII ACRYGT 1 cut(s) 618
AjiI CACGTC 1 cut(s) 619
AluBI AGCT 5 cut(s) 179, 298, 317, 1169, 1415
AluI AGCT 5 cut(s) 179, 298, 317, 1169, 1415
Alw21I GWGCWC 1 cut(s) 314
Alw26I GTCTC 1 cut(s) 1344
AlwI GGATC 2 cut(s) 592, 1044
AlwNI CAGNNNCTG 1 cut(s) 1277
AoxI GGCC 1 cut(s) 762
ApeKI GCWGC 4 cut(s) 823, 1403, 1415, 1418
ApoI RAATTY 6 cut(s) 117, 137, 448, 590, 709, 1499
Asp700I GAANNNNTTC 1 cut(s) 1236
AspLEI GCGC 2 cut(s) 966, 1423
AspS9I GGNCC 3 cut(s) 256, 762, 1548
AsuHPI GGTGA 5 cut(s) 236, 515, 659, 1152, 1396
AvaII GGWCC 2 cut(s) 256, 1548
AxyI CCTNAGG 1 cut(s) 1125
BaeGI GKGCMC 1 cut(s) 1157
BbsI GAAGAC 2 cut(s) 151, 839
Bbv12I GWGCWC 1 cut(s) 314
BbvI GCAGC 4 cut(s) 810, 1390, 1402, 1405
BccI CCATC 5 cut(s) 212, 506, 739, 911, 1058
BceAI ACGGC 1 cut(s) 222
BcgI CGANNNNNNTGC 2 cut(s) 1343, 1377
BciVI GTATCC 1 cut(s) 1609
BcoDI GTCTC 1 cut(s) 1344
BfaI CTAG 1 cut(s) 1539
BfrI CTTAAG 1 cut(s) 1207
BfuAI ACCTGC 1 cut(s) 964
BfuI GTATCC 1 cut(s) 1609
BisI GCNGC 6 cut(s) 219, 279, 824, 1404, 1416, 1419
BlpI GCTNAGC 2 cut(s) 313, 960
BlsI GCNGC 6 cut(s) 220, 280, 825, 1405, 1417, 1420
Bme18I GGWCC 2 cut(s) 256, 1548
BmgBI CACGTC 1 cut(s) 619
BmgT120I GGNCC 3 cut(s) 256, 762, 1548
BmiI GGNNCC 1 cut(s) 258
BmsI GCATC 3 cut(s) 348, 810, 889
BpiI GAAGAC 2 cut(s) 151, 839
BpmI CTGGAG 2 cut(s) 339, 848
Bpu10I CCTNAGC 1 cut(s) 50
Bpu1102I GCTNAGC 2 cut(s) 313, 960
BpuEI CTTGAG 2 cut(s) 65, 165
BsaBI GATNNNNATC 1 cut(s) 1320
BsaWI WCCGGW 1 cut(s) 779
BsaXI ACNNNNNCTCC 2 cut(s) 734, 764
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 253, 805
Bse118I RCCGGY 1 cut(s) 1285
Bse1I ACTGG 4 cut(s) 356, 526, 1074, 1254
Bse21I CCTNAGG 1 cut(s) 1125
Bse3DI GCAATG 2 cut(s) 344, 765
Bse8I GATNNNNATC 1 cut(s) 1320
BseGI GGATG 6 cut(s) 150, 438, 573, 825, 1135, 1321
BseJI GATNNNNATC 1 cut(s) 1320
BseLI CCNNNNNNNGG 3 cut(s) 62, 253, 805
BseMI GCAATG 2 cut(s) 344, 765
BseMII CTCAG 6 cut(s) 327, 927, 951, 1116, 1269, 1470
BseNI ACTGG 4 cut(s) 356, 526, 1074, 1254
BseRI GAGGAG 2 cut(s) 1057, 1385
BseSI GKGCMC 1 cut(s) 1157
BseXI GCAGC 4 cut(s) 810, 1390, 1402, 1405
BseYI CCCAGC 1 cut(s) 40
Bsh1236I CGCG 1 cut(s) 308
BshFI GGCC 1 cut(s) 764
BsiHKAI GWGCWC 1 cut(s) 314
BsiSI CCGG 2 cut(s) 780, 1286
BslFI GGGAC 2 cut(s) 416, 736
BslI CCNNNNNNNGG 3 cut(s) 62, 253, 805
BsmAI GTCTC 1 cut(s) 1344
BsmBI CGTCTC 1 cut(s) 1344
BsmFI GGGAC 2 cut(s) 416, 736
BsnI GGCC 1 cut(s) 764
Bsp1286I GDGCHC 2 cut(s) 314, 1157
Bsp1407I TGTACA 1 cut(s) 372
Bsp143I GATC 5 cut(s) 584, 1036, 1145, 1198, 1321
Bsp1720I GCTNAGC 2 cut(s) 313, 960
BspACI CCGC 4 cut(s) 219, 279, 306, 548
BspANI GGCC 1 cut(s) 764
BspCNI CTCAG 6 cut(s) 326, 928, 952, 1117, 1270, 1471
BspFNI CGCG 1 cut(s) 308
BspHI TCATGA 2 cut(s) 1003, 1255
BspLI GGNNCC 1 cut(s) 258
BspMI ACCTGC 1 cut(s) 964
BspPI GGATC 2 cut(s) 592, 1044
BspQI GCTCTTC 1 cut(s) 329
BspTI CTTAAG 1 cut(s) 1207
BsrDI GCAATG 2 cut(s) 344, 765
BsrFI RCCGGY 1 cut(s) 1285
BsrGI TGTACA 1 cut(s) 372
BsrI ACTGG 4 cut(s) 356, 526, 1074, 1254
BssAI RCCGGY 1 cut(s) 1285
BssMI GATC 5 cut(s) 584, 1036, 1145, 1198, 1321
Bst4CI ACNGT 2 cut(s) 702, 1136
Bst6I CTCTTC 1 cut(s) 329
BstAFI CTTAAG 1 cut(s) 1207
BstAPI GCANNNNNTGC 1 cut(s) 350
BstAUI TGTACA 1 cut(s) 372
BstC8I GCNNGC 3 cut(s) 177, 310, 351
BstDEI CTNAG 9 cut(s) 50, 313, 632, 936, 960, 1125, 1278, 1293, 1479
BstENI CCTNNNNNAGG 1 cut(s) 803
BstF5I GGATG 6 cut(s) 150, 438, 573, 825, 1135, 1321
BstFNI CGCG 1 cut(s) 308
BstHHI GCGC 2 cut(s) 966, 1423
BstKTI GATC 5 cut(s) 587, 1039, 1148, 1201, 1324
BstMAI GTCTC 1 cut(s) 1344
BstMBI GATC 5 cut(s) 584, 1036, 1145, 1198, 1321
BstMWI GCNNNNNNNGC 3 cut(s) 314, 350, 1412
BstNSI RCATGY 1 cut(s) 1364
BstSLI GKGCMC 1 cut(s) 1157
BstUI CGCG 1 cut(s) 308
BstV1I GCAGC 4 cut(s) 810, 1390, 1402, 1405
BstV2I GAAGAC 2 cut(s) 151, 839
BstXI CCANNNNNNTGG 1 cut(s) 910
Bsu36I CCTNAGG 1 cut(s) 1125
BsuI GTATCC 1 cut(s) 1609
BsuRI GGCC 1 cut(s) 764
BtgZI GCGATG 1 cut(s) 325
BtrI CACGTC 1 cut(s) 619
BtsCI GGATG 6 cut(s) 150, 438, 573, 825, 1135, 1321
BtsI GCAGTG 2 cut(s) 619, 1017
BtsIMutI CAGTG 3 cut(s) 363, 619, 1017
BveI ACCTGC 1 cut(s) 964
Cac8I GCNNGC 3 cut(s) 177, 310, 351
CaiI CAGNNNCTG 1 cut(s) 1277
CciI TCATGA 2 cut(s) 1003, 1255
CfoI GCGC 2 cut(s) 966, 1423
Cfr10I RCCGGY 1 cut(s) 1285
Cfr13I GGNCC 3 cut(s) 256, 762, 1548
Csp6I GTAC 2 cut(s) 373, 1242
CviAII CATG 9 cut(s) 967, 982, 1004, 1031, 1202, 1228, 1256, 1361, 1396
CviQI GTAC 2 cut(s) 373, 1242
DdeI CTNAG 9 cut(s) 50, 313, 632, 936, 960, 1125, 1278, 1293, 1479
DpnI GATC 5 cut(s) 586, 1038, 1147, 1200, 1323
DpnII GATC 5 cut(s) 584, 1036, 1145, 1198, 1321
Eam1104I CTCTTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 329
Eco47I GGWCC 2 cut(s) 256, 1548
Eco57I CTGAAG 1 cut(s) 885
Eco81I CCTNAGG 1 cut(s) 1125
EcoNI CCTNNNNNAGG 1 cut(s) 803
EcoO109I RGGNCCY 2 cut(s) 256, 1548
Esp3I CGTCTC 1 cut(s) 1344
FaeI CATG 9 cut(s) 970, 985, 1007, 1034, 1205, 1231, 1259, 1364, 1399
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FaqI GGGAC 2 cut(s) 416, 736
FatI CATG 9 cut(s) 966, 981, 1003, 1030, 1201, 1227, 1255, 1360, 1395
FblI GTMKAC 1 cut(s) 186
Fnu4HI GCNGC 6 cut(s) 219, 279, 824, 1404, 1416, 1419
FokI GGATG 6 cut(s) 137, 445, 580, 832, 1142, 1328
Fsp4HI GCNGC 6 cut(s) 219, 279, 824, 1404, 1416, 1419
FspBI CTAG 1 cut(s) 1539
FspI TGCGCA 1 cut(s) 1422
GlaI GCGC 2 cut(s) 965, 1422
GluI GCNGC 6 cut(s) 219, 279, 824, 1404, 1416, 1419
GsaI CCCAGC 1 cut(s) 44
GsuI CTGGAG 2 cut(s) 339, 848
HaeIII GGCC 1 cut(s) 764
HapII CCGG 2 cut(s) 780, 1286
HhaI GCGC 2 cut(s) 966, 1423
Hin1II CATG 9 cut(s) 970, 985, 1007, 1034, 1205, 1231, 1259, 1364, 1399
Hin6I GCGC 2 cut(s) 964, 1421
HinP1I GCGC 2 cut(s) 964, 1421
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HinfI GANTC 9 cut(s) 20, 200, 265, 1114, 1120, 1274, 1391, 1532, 1597
HpaI GTTAAC 1 cut(s) 87
HpaII CCGG 2 cut(s) 780, 1286
HphI GGTGA 5 cut(s) 236, 515, 659, 1152, 1396
Hpy166II GTNNAC 4 cut(s) 87, 187, 373, 1079
Hpy188III TCNNGA 4 cut(s) 197, 1004, 1124, 1256
Hpy8I GTNNAC 4 cut(s) 87, 187, 373, 1079
HpyAV CCTTC 3 cut(s) 638, 727, 1526
HpyCH4III ACNGT 2 cut(s) 702, 1136
HpyCH4IV ACGT 2 cut(s) 227, 618
HpyCH4V TGCA 8 cut(s) 175, 476, 492, 680, 1067, 1139, 1364, 1406
HpyF10VI GCNNNNNNNGC 3 cut(s) 314, 350, 1412
HpyF3I CTNAG 9 cut(s) 50, 313, 632, 936, 960, 1125, 1278, 1293, 1479
HpySE526I ACGT 2 cut(s) 227, 618
Hsp92II CATG 9 cut(s) 970, 985, 1007, 1034, 1205, 1231, 1259, 1364, 1399
HspAI GCGC 2 cut(s) 964, 1421
KspAI GTTAAC 1 cut(s) 87
Kzo9I GATC 5 cut(s) 584, 1036, 1145, 1198, 1321
LguI GCTCTTC 1 cut(s) 329
LmnI GCTCC 2 cut(s) 358, 1027
Lsp1109I GCAGC 4 cut(s) 810, 1390, 1402, 1405
LweI GCATC 3 cut(s) 348, 810, 889
MaeI CTAG 1 cut(s) 1539
MaeII ACGT 2 cut(s) 227, 618
MaeIII GTNAC 6 cut(s) 614, 656, 844, 997, 1060, 1523
MalI GATC 5 cut(s) 586, 1038, 1147, 1200, 1323
MboI GATC 5 cut(s) 584, 1036, 1145, 1198, 1321
MhlI GDGCHC 2 cut(s) 314, 1157
MlyI GAGTC 3 cut(s) 14, 1268, 1526
MmeI TCCRAC 2 cut(s) 720, 1278
MroXI GAANNNNTTC 1 cut(s) 1236
MseI TTAA 8 cut(s) 14, 86, 396, 554, 752, 1101, 1188, 1208
MslI CAYNNNNRTG 1 cut(s) 1365
MspA1I CMGCKG 1 cut(s) 298
MspCI CTTAAG 1 cut(s) 1207
MspI CCGG 2 cut(s) 780, 1286
MvnI CGCG 1 cut(s) 308
MwoI GCNNNNNNNGC 3 cut(s) 314, 350, 1412
NdeII GATC 5 cut(s) 584, 1036, 1145, 1198, 1321
NlaIII CATG 9 cut(s) 970, 985, 1007, 1034, 1205, 1231, 1259, 1364, 1399
NlaIV GGNNCC 1 cut(s) 258
NmeAIII GCCGAG 1 cut(s) 1514
NmuCI GTSAC 1 cut(s) 614
NsbI TGCGCA 1 cut(s) 1422
NspI RCATGY 1 cut(s) 1364
PagI TCATGA 2 cut(s) 1003, 1255
PciSI GCTCTTC 1 cut(s) 329
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PdmI GAANNNNTTC 1 cut(s) 1236
PfeI GAWTC 6 cut(s) 200, 265, 1114, 1120, 1391, 1597
PkrI GCNGC 6 cut(s) 220, 280, 825, 1405, 1417, 1420
PleI GAGTC 3 cut(s) 14, 1268, 1526
PpsI GAGTC 3 cut(s) 14, 1268, 1526
PpuMI RGGWCCY 2 cut(s) 256, 1548
PsiI TTATAA 1 cut(s) 1175
Psp5II RGGWCCY 2 cut(s) 256, 1548
PspFI CCCAGC 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 3 cut(s) 256, 762, 1548
PspPPI RGGWCCY 2 cut(s) 256, 1548
PsrI GAACNNNNNNTAC 2 cut(s) 447, 479
PstNI CAGNNNCTG 1 cut(s) 1277
PvuII CAGCTG 1 cut(s) 298
RsaI GTAC 2 cut(s) 374, 1243
RsaNI GTAC 2 cut(s) 373, 1242
RseI CAYNNNNRTG 1 cut(s) 1365
SapI GCTCTTC 1 cut(s) 329
SaqAI TTAA 8 cut(s) 14, 86, 396, 554, 752, 1101, 1188, 1208
SatI GCNGC 6 cut(s) 219, 279, 824, 1404, 1416, 1419
Sau3AI GATC 5 cut(s) 584, 1036, 1145, 1198, 1321
Sau96I GGNCC 3 cut(s) 256, 762, 1548
SchI GAGTC 3 cut(s) 14, 1268, 1526
SduI GDGCHC 2 cut(s) 314, 1157
SfaNI GCATC 3 cut(s) 348, 810, 889
SinI GGWCC 2 cut(s) 256, 1548
SmiMI CAYNNNNRTG 1 cut(s) 1365
SmlI CTYRAG 3 cut(s) 80, 180, 1207
SmoI CTYRAG 3 cut(s) 80, 180, 1207
SsiI CCGC 4 cut(s) 219, 279, 306, 548
SspMI CTAG 1 cut(s) 1539
TaaI ACNGT 2 cut(s) 702, 1136
TaiI ACGT 2 cut(s) 230, 621
TaqI TCGA 3 cut(s) 18, 198, 268
TaqII GACCGA 1 cut(s) 310
TatI WGTACW 1 cut(s) 372
TauI GCSGC 2 cut(s) 221, 281
TfiI GAWTC 6 cut(s) 200, 265, 1114, 1120, 1391, 1597
Tru1I TTAA 8 cut(s) 14, 86, 396, 554, 752, 1101, 1188, 1208
Tru9I TTAA 8 cut(s) 14, 86, 396, 554, 752, 1101, 1188, 1208
TscAI CASTG 3 cut(s) 363, 619, 1017
TseFI GTSAC 1 cut(s) 614
TseI GCWGC 4 cut(s) 823, 1403, 1415, 1418
Tsp45I GTSAC 1 cut(s) 614
TspGWI ACGGA 1 cut(s) 1474
TspRI CASTG 3 cut(s) 363, 619, 1017
Vha464I CTTAAG 1 cut(s) 1207
VpaK11BI GGWCC 2 cut(s) 256, 1548
XagI CCTNNNNNAGG 1 cut(s) 803
XapI RAATTY 6 cut(s) 117, 137, 448, 590, 709, 1499
XceI RCATGY 1 cut(s) 1364
XmiI GTMKAC 1 cut(s) 186
XmnI GAANNNNTTC 1 cut(s) 1236
XspI CTAG 1 cut(s) 1539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.