Rmu_sc0002882.1_g000032

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002882.1
OG0002351
Physical Location & Seq
Forward (+)
81526 .. 82194
669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002882.1_g000032.1.cds

Sequence Viewer

Length: 426 bp
atgcaagctcgggtcgacccgcctctccaatccatctgggtctacaccgcattgacatttcggagccggaaccacccgaaaggcgacatcttggaccgaattgcagccgcaaaggacttgtttcagctattcttctcttgctcagctccctgcggttgctcaaaaagcatcgcgctgctcgttccggtggtgcggttggcacacgacgttgttttggatttgtttaagagggaattggggttgaagaaagagaagaaagtgacgaaggaggggaagaatttggtgggagtgattatggctgggacttcaggggaggtgttgaagacagagttgaggacttgggctgttgacgggagcgcctgccttgacgagaatcgtaatctggggcgttggagggagatgacgaagtctttggggttgtactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.72

Weight (kDa)

9.44

Isoelectric Point (pI)

31.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 15, 42
AccII CGCG 1 cut(s) 173
AciI CCGC 5 cut(s) 20, 48, 108, 153, 193
AcsI RAATTY 1 cut(s) 277
AcuI CTGAAG 1 cut(s) 291
AfaI GTAC 1 cut(s) 422
AgsI TTSAA 2 cut(s) 244, 322
AluBI AGCT 3 cut(s) 8, 127, 146
AluI AGCT 3 cut(s) 8, 127, 146
Ama87I CYCGRG 1 cut(s) 9
ApeKI GCWGC 2 cut(s) 104, 175
ApoI RAATTY 1 cut(s) 277
ArsI GACNNNNNNTTYG 2 cut(s) 394, 426
AspLEI GCGC 2 cut(s) 175, 359
AspS9I GGNCC 1 cut(s) 94
AvaI CYCGRG 1 cut(s) 9
AvaII GGWCC 1 cut(s) 94
BbsI GAAGAC 1 cut(s) 329
BbvI GCAGC 2 cut(s) 116, 162
BccI CCATC 1 cut(s) 41
BfoI RGCGCY 1 cut(s) 360
BisI GCNGC 3 cut(s) 105, 108, 176
BlpI GCTNAGC 1 cut(s) 142
BlsI GCNGC 3 cut(s) 106, 109, 177
Bme18I GGWCC 1 cut(s) 94
BmeT110I CYCGRG 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 94
BmiI GGNNCC 2 cut(s) 65, 71
BmsI GCATC 1 cut(s) 177
BpiI GAAGAC 1 cut(s) 329
Bpu1102I GCTNAGC 1 cut(s) 142
BsaWI WCCGGW 1 cut(s) 184
BseMII CTCAG 1 cut(s) 156
BseXI GCAGC 2 cut(s) 116, 162
BseYI CCCAGC 1 cut(s) 299
Bsh1236I CGCG 1 cut(s) 173
BsiHKCI CYCGRG 1 cut(s) 9
BsiSI CCGG 2 cut(s) 67, 185
BslFI GGGAC 1 cut(s) 316
BsmFI GGGAC 1 cut(s) 316
BsoBI CYCGRG 1 cut(s) 9
Bsp1720I GCTNAGC 1 cut(s) 142
BspACI CCGC 5 cut(s) 20, 48, 108, 153, 193
BspCNI CTCAG 1 cut(s) 155
BspFNI CGCG 1 cut(s) 173
BspLI GGNNCC 2 cut(s) 65, 71
BstC8I GCNNGC 2 cut(s) 6, 361
BstDEI CTNAG 1 cut(s) 142
BstFNI CGCG 1 cut(s) 173
BstH2I RGCGCY 1 cut(s) 360
BstHHI GCGC 2 cut(s) 175, 359
BstMWI GCNNNNNNNGC 1 cut(s) 165
BstUI CGCG 1 cut(s) 173
BstV1I GCAGC 2 cut(s) 116, 162
BstV2I GAAGAC 1 cut(s) 329
BtgZI GCGATG 1 cut(s) 154
Cac8I GCNNGC 2 cut(s) 6, 361
CfoI GCGC 2 cut(s) 175, 359
Cfr13I GGNCC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 421
CviJI RGCY 7 cut(s) 8, 66, 107, 127, 146, 299, 344
CviKI_1 RGCY 7 cut(s) 8, 66, 107, 127, 146, 299, 344
CviQI GTAC 1 cut(s) 421
DdeI CTNAG 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 291
Eco88I CYCGRG 1 cut(s) 9
FaiI YATR 1 cut(s) 296
FaqI GGGAC 1 cut(s) 316
FauI CCCGC 1 cut(s) 27
FblI GTMKAC 2 cut(s) 15, 42
Fnu4HI GCNGC 3 cut(s) 105, 108, 176
Fsp4HI GCNGC 3 cut(s) 105, 108, 176
GlaI GCGC 2 cut(s) 174, 358
GluI GCNGC 3 cut(s) 105, 108, 176
GsaI CCCAGC 1 cut(s) 303
HaeII RGCGCY 1 cut(s) 360
HapII CCGG 2 cut(s) 67, 185
HhaI GCGC 2 cut(s) 175, 359
Hin6I GCGC 2 cut(s) 173, 357
HinP1I GCGC 2 cut(s) 173, 357
HincII GTYRAC 2 cut(s) 16, 349
HindII GTYRAC 2 cut(s) 16, 349
HinfI GANTC 1 cut(s) 373
HpaII CCGG 2 cut(s) 67, 185
Hpy166II GTNNAC 3 cut(s) 16, 43, 349
Hpy188I TCNGA 1 cut(s) 63
Hpy8I GTNNAC 3 cut(s) 16, 43, 349
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 1 cut(s) 259
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 2 cut(s) 4, 104
HpyF10VI GCNNNNNNNGC 1 cut(s) 165
HpyF3I CTNAG 1 cut(s) 142
HpySE526I ACGT 1 cut(s) 207
HspAI GCGC 2 cut(s) 173, 357
LmnI GCTCC 3 cut(s) 63, 151, 354
LpnPI CCDG 8 cut(s) 22, 80, 163, 198, 285, 294, 368, 373
Lsp1109I GCAGC 2 cut(s) 116, 162
LweI GCATC 1 cut(s) 177
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 259
MboII GAAGA 5 cut(s) 124, 256, 265, 286, 334
MluCI AATT 3 cut(s) 99, 233, 277
MmeI TCCRAC 1 cut(s) 371
MnlI CCTC 6 cut(s) 33, 222, 262, 307, 327, 387
MseI TTAA 1 cut(s) 225
MspI CCGG 2 cut(s) 67, 185
MvnI CGCG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 165
NlaIV GGNNCC 2 cut(s) 65, 71
NmuCI GTSAC 1 cut(s) 259
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PfeI GAWTC 1 cut(s) 373
PflFI GACNNNGTC 1 cut(s) 406
PkrI GCNGC 3 cut(s) 106, 109, 177
PspFI CCCAGC 1 cut(s) 299
PspN4I GGNNCC 2 cut(s) 65, 71
PspPI GGNCC 1 cut(s) 94
PsyI GACNNNGTC 1 cut(s) 406
RsaI GTAC 1 cut(s) 422
RsaNI GTAC 1 cut(s) 421
SalI GTCGAC 1 cut(s) 14
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 3 cut(s) 105, 108, 176
Sau96I GGNCC 1 cut(s) 94
SetI ASST 5 cut(s) 10, 129, 148, 210, 318
SfaNI GCATC 1 cut(s) 177
SinI GGWCC 1 cut(s) 94
Sse9I AATT 3 cut(s) 99, 233, 277
SsiI CCGC 5 cut(s) 20, 48, 108, 153, 193
TaiI ACGT 1 cut(s) 210
TaqI TCGA 1 cut(s) 15
TaqII GACCGA 1 cut(s) 111
TasI AATT 3 cut(s) 99, 233, 277
TatI WGTACW 1 cut(s) 420
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 1 cut(s) 373
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 2 cut(s) 104, 175
Tsp45I GTSAC 1 cut(s) 259
Tth111I GACNNNGTC 1 cut(s) 406
VpaK11BI GGWCC 1 cut(s) 94
XapI RAATTY 1 cut(s) 277
XmiI GTMKAC 2 cut(s) 15, 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.