Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002351

Physical Location & Seq

Genomic Coordinates Forward (+)

3339147 .. 3339977

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G003880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGTTCCATCTCTAATTGAGTTCACGACTTCCTCAAATTCACCAAACTCCGAACCCCAAATTAAGCTAAGCCCATCAATTCAGACCGTCGTAGATGAAATCCACAAGGAAAACCCCAAATTCTCTCCCTTGATTCAACAATTCTACCTACCAATGCAAGCTCGGGTCGACCCGCCTCTCGAATCCATCTGGGTCTACACCGCATTGACATTTCGGAGCCGGAACCACCCGAAAGGCGACATCTTGGACCGAATCGCCGCCGCAAAGGACTTGTTTCAGCTACTCTCCTCTTGCTCAGCTCCCTGCTGTTGCTCAAAAAGATTCGCGCTGCTCGTTCAGGTGGTGCGGTTGGCACACGACGTTGTTTTGGATTTGTTTAAGAAGGACTTGGGGTTGAAGAAAGAGAAAAAGGTGACGAAGGAGGTAAAGAATTTGGTGGGAGTGATTATGGGGTTTATAAGTGTGTGCTGTTCTAGCAGGGATTTGGGTCAGGAGGATCCTTTGATTGATTCGAGTTCGGGTTGGTCTTTTTCGAGTTTAAGTTTTGTTTGGTTGAACAGAGATGAGAATGTTAGGAATTTGTTACCATTAGTGAGTGAGGAGGTGATTGATGGGCTCAGTGAGAGAGATGGGGATATGAGTTACTTGGCTGGAGTTGTTATTGCAGAGGTTTTTTTGTTGAGACTGTGCTTGAATTGCAAAGCTGGGACTTCAGGGGAGGTGTTGAAGACAGAGTTGAGGACTTGGGCTGTCAACAGGGGCGCCTGCCTTGACGAGAATCGTCATCTGGGGCGTTGGAGGGAGATGACGAAGTCTTTGGGGTTGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

276

Amino Acids

30.91

Weight (kDa)

6.89

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11780
fragaria_vesca	FvH4_1g07060
malus_domestica	MD02G1074500.v1.1
prunus_persica	Prupe.7G213400_v2.0.a1
pyrus_communis	pycom02g05890 pycom15g18070
rosa_chinensis	RchiOBHm_Chr2g0092961 RchiOBHm_Chr4g0406051 RchiOBHm_Chr4g0425381
rosa_laevigata	RLG00000008045 RLG00000016353 RLG00000020789 RLG00000033390
rosa_multiflora	Rmu_co8270331.1_g000001 Rmu_sc0000596.1_g000010 Rmu_sc0000965.1_g000017 Rmu_sc0002862.1_g000003 Rmu_sc0002882.1_g000032 Rmu_sc0003902.1_g000018 Rmu_sc0006662.1_g000006 Rmu_sc0010963.1_g000006 Rmu_sc0012535.1_g000006
rosa_roxburghii	Rroxscaffold_2G00148670
rosa_rugosa	Rorug02G0030700
rosa_samantha	Rh1DG034900 Rh2AG076700 Rh2BG078000 Rh2CG080200 Rh2DG075300 Rh2DG566700 Rh3BG038800 Rh3CG266800 Rh3DG038000 Rh3DG262900 Rh6AG284700 Rh6BG048400 Rh6BG286100 Rh6CG287100 Rh7AG478700
rosa_wichuraiana	Rw2G006950 Rw3G003880 Rw3G021260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	458
AccB1I	GGYRCC	1 cut(s)	761
AccI	GTMKAC	2 cut(s)	168, 195
AccII	CGCG	1 cut(s)	326
AciI	CCGC	5 cut(s)	173, 201, 258, 261, 346
AclWI	GGATC	2 cut(s)	491, 504
AcsI	RAATTY	4 cut(s)	37, 119, 430, 577
AcuI	CTGAAG	1 cut(s)	696
AcyI	GRCGYC	1 cut(s)	762
AfaI	GTAC	1 cut(s)	827
AgsI	TTSAA	5 cut(s)	137, 397, 556, 694, 727
AluBI	AGCT	5 cut(s)	67, 161, 280, 299, 704
AluI	AGCT	5 cut(s)	67, 161, 280, 299, 704
Alw26I	GTCTC	1 cut(s)	676
AlwI	GGATC	2 cut(s)	491, 504
Ama87I	CYCGRG	1 cut(s)	162
ApeKI	GCWGC	1 cut(s)	328
ApoI	RAATTY	4 cut(s)	37, 119, 430, 577
ArsI	GACNNNNNNTTYG	2 cut(s)	799, 831
AspLEI	GCGC	2 cut(s)	328, 764
AspS9I	GGNCC	1 cut(s)	247
AsuHPI	GGTGA	3 cut(s)	33, 424, 616
AvaI	CYCGRG	1 cut(s)	162
AvaII	GGWCC	1 cut(s)	247
BamHI	GGATCC	1 cut(s)	496
BanI	GGYRCC	1 cut(s)	761
BanII	GRGCYC	1 cut(s)	618
BbsI	GAAGAC	1 cut(s)	734
BbvI	GCAGC	1 cut(s)	315
BccI	CCATC	5 cut(s)	16, 82, 194, 605, 623
BcoDI	GTCTC	1 cut(s)	676
BfaI	CTAG	1 cut(s)	474
BfoI	RGCGCY	1 cut(s)	765
BisI	GCNGC	3 cut(s)	258, 261, 329
BlpI	GCTNAGC	2 cut(s)	68, 295
BlsI	GCNGC	3 cut(s)	259, 262, 330
Bme18I	GGWCC	1 cut(s)	247
BmeT110I	CYCGRG	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	5 cut(s)	6, 218, 224, 498, 763
BpiI	GAAGAC	1 cut(s)	734
BpmI	CTGGAG	1 cut(s)	672
Bpu1102I	GCTNAGC	2 cut(s)	68, 295
BsaHI	GRCGYC	1 cut(s)	762
BseMII	CTCAG	2 cut(s)	309, 631
BseRI	GAGGAG	2 cut(s)	277, 614
BseXI	GCAGC	1 cut(s)	315
BseYI	CCCAGC	1 cut(s)	704
Bsh1236I	CGCG	1 cut(s)	326
BshNI	GGYRCC	1 cut(s)	761
BsiHKCI	CYCGRG	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	220
BslFI	GGGAC	1 cut(s)	721
BsmAI	GTCTC	1 cut(s)	676
BsmFI	GGGAC	1 cut(s)	721
BsoBI	CYCGRG	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	618
Bsp143I	GATC	1 cut(s)	496
Bsp1720I	GCTNAGC	2 cut(s)	68, 295
BspACI	CCGC	5 cut(s)	173, 201, 258, 261, 346
BspCNI	CTCAG	2 cut(s)	308, 630
BspFNI	CGCG	1 cut(s)	326
BspLI	GGNNCC	5 cut(s)	6, 218, 224, 498, 763
BspPI	GGATC	2 cut(s)	491, 504
BspT107I	GGYRCC	1 cut(s)	761
BssMI	GATC	1 cut(s)	496
BssNI	GRCGYC	1 cut(s)	762
Bst4CI	ACNGT	2 cut(s)	88, 687
BstACI	GRCGYC	1 cut(s)	762
BstC8I	GCNNGC	2 cut(s)	159, 766
BstDEI	CTNAG	3 cut(s)	68, 295, 617
BstFNI	CGCG	1 cut(s)	326
BstH2I	RGCGCY	1 cut(s)	765
BstHHI	GCGC	2 cut(s)	328, 764
BstKTI	GATC	1 cut(s)	499
BstMAI	GTCTC	1 cut(s)	676
BstMBI	GATC	1 cut(s)	496
BstMWI	GCNNNNNNNGC	2 cut(s)	474, 696
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	1 cut(s)	315
BstV2I	GAAGAC	1 cut(s)	734
BstX2I	RGATCY	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	496
BtsIMutI	CAGTG	1 cut(s)	625
Cac8I	GCNNGC	2 cut(s)	159, 766
CfoI	GCGC	2 cut(s)	328, 764
Cfr13I	GGNCC	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	826
CviQI	GTAC	1 cut(s)	826
DdeI	CTNAG	3 cut(s)	68, 295, 617
DinI	GGCGCC	1 cut(s)	763
DpnI	GATC	1 cut(s)	498
DpnII	GATC	1 cut(s)	496
Eco24I	GRGCYC	1 cut(s)	618
Eco47I	GGWCC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	696
Eco88I	CYCGRG	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	618
EgeI	GGCGCC	1 cut(s)	763
EheI	GGCGCC	1 cut(s)	763
FaiI	YATR	3 cut(s)	449, 458, 638
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FaqI	GGGAC	1 cut(s)	721
FauI	CCCGC	1 cut(s)	180
FblI	GTMKAC	2 cut(s)	168, 195
Fnu4HI	GCNGC	3 cut(s)	258, 261, 329
FriOI	GRGCYC	1 cut(s)	618
Fsp4HI	GCNGC	3 cut(s)	258, 261, 329
FspBI	CTAG	1 cut(s)	474
GlaI	GCGC	2 cut(s)	327, 763
GluI	GCNGC	3 cut(s)	258, 261, 329
GsaI	CCCAGC	1 cut(s)	708
GsuI	CTGGAG	1 cut(s)	672
HaeII	RGCGCY	1 cut(s)	765
HapII	CCGG	1 cut(s)	220
HhaI	GCGC	2 cut(s)	328, 764
Hin1I	GRCGYC	1 cut(s)	762
Hin6I	GCGC	2 cut(s)	326, 762
HinP1I	GCGC	2 cut(s)	326, 762
HincII	GTYRAC	2 cut(s)	169, 754
HindII	GTYRAC	2 cut(s)	169, 754
HinfI	GANTC	6 cut(s)	133, 182, 252, 321, 509, 778
HpaII	CCGG	1 cut(s)	220
HphI	GGTGA	3 cut(s)	33, 424, 616
Hpy166II	GTNNAC	4 cut(s)	24, 169, 196, 754
Hpy188I	TCNGA	3 cut(s)	52, 84, 216
Hpy188III	TCNNGA	3 cut(s)	25, 179, 491
Hpy8I	GTNNAC	4 cut(s)	24, 169, 196, 754
Hpy99I	CGWCG	2 cut(s)	92, 362
HpyAV	CCTTC	2 cut(s)	376, 412
HpyCH4III	ACNGT	2 cut(s)	88, 687
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	3 cut(s)	157, 665, 699
HpyF10VI	GCNNNNNNNGC	2 cut(s)	474, 696
HpyF3I	CTNAG	3 cut(s)	68, 295, 617
HpySE526I	ACGT	1 cut(s)	360
Hsp92I	GRCGYC	1 cut(s)	762
HspAI	GCGC	2 cut(s)	326, 762
KasI	GGCGCC	1 cut(s)	761
Kzo9I	GATC	1 cut(s)	496
LmnI	GCTCC	2 cut(s)	216, 304
Lsp1109I	GCAGC	1 cut(s)	315
MaeI	CTAG	1 cut(s)	474
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	3 cut(s)	412, 582, 641
MalI	GATC	1 cut(s)	498
MboI	GATC	1 cut(s)	496
MboII	GAAGA	2 cut(s)	409, 739
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	1 cut(s)	618
MluCI	AATT	9 cut(s)	15, 37, 60, 78, 119, 140, 430, 577, 694
Mly113I	GGCGCC	1 cut(s)	762
MmeI	TCCRAC	1 cut(s)	776
MseI	TTAA	3 cut(s)	63, 378, 539
MspI	CCGG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	2 cut(s)	474, 696
NarI	GGCGCC	1 cut(s)	762
NdeII	GATC	1 cut(s)	496
NlaIV	GGNNCC	5 cut(s)	6, 218, 224, 498, 763
NmuCI	GTSAC	1 cut(s)	412
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PfeI	GAWTC	6 cut(s)	133, 182, 252, 321, 509, 778
PflFI	GACNNNGTC	1 cut(s)	811
PkrI	GCNGC	3 cut(s)	259, 262, 330
PluTI	GGCGCC	1 cut(s)	765
PsiI	TTATAA	1 cut(s)	458
PspFI	CCCAGC	1 cut(s)	704
PspN4I	GGNNCC	5 cut(s)	6, 218, 224, 498, 763
PspPI	GGNCC	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	496
PsyI	GACNNNGTC	1 cut(s)	811
RsaI	GTAC	1 cut(s)	827
RsaNI	GTAC	1 cut(s)	826
SalI	GTCGAC	1 cut(s)	167
SaqAI	TTAA	3 cut(s)	63, 378, 539
SatI	GCNGC	3 cut(s)	258, 261, 329
Sau3AI	GATC	1 cut(s)	496
Sau96I	GGNCC	1 cut(s)	247
SduI	GDGCHC	1 cut(s)	618
SfoI	GGCGCC	1 cut(s)	763
SinI	GGWCC	1 cut(s)	247
Sse9I	AATT	9 cut(s)	15, 37, 60, 78, 119, 140, 430, 577, 694
SsiI	CCGC	5 cut(s)	173, 201, 258, 261, 346
SspDI	GGCGCC	1 cut(s)	761
SspMI	CTAG	1 cut(s)	474
TaaI	ACNGT	2 cut(s)	88, 687
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	4 cut(s)	168, 180, 512, 533
TaqII	GACCGA	1 cut(s)	264
TasI	AATT	9 cut(s)	15, 37, 60, 78, 119, 140, 430, 577, 694
TatI	WGTACW	1 cut(s)	825
TauI	GCSGC	2 cut(s)	260, 263
TfiI	GAWTC	6 cut(s)	133, 182, 252, 321, 509, 778
Tru1I	TTAA	3 cut(s)	63, 378, 539
Tru9I	TTAA	3 cut(s)	63, 378, 539
TscAI	CASTG	1 cut(s)	625
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	1 cut(s)	328
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	1 cut(s)	111
TspRI	CASTG	1 cut(s)	625
Tth111I	GACNNNGTC	1 cut(s)	811
VpaK11BI	GGWCC	1 cut(s)	247
XapI	RAATTY	4 cut(s)	37, 119, 430, 577
XmiI	GTMKAC	2 cut(s)	168, 195
XspI	CTAG	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.