Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002351

Physical Location & Seq

Genomic Coordinates Forward (+)

12826082 .. 12826732

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g18070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCTCTCGCTCTCATTGGCTCCACAAATTCTCCAGATACGCCAAACATGAAAACTCTAATCGGCAAAAACTACGACCTCAAGCTAATCCAATCAATCCAAAACCTTTTATCCGAAATTGACAAGCAAAACCCCAAATTATCTGTCTTTATTGAGGAATTCTACGAATTGATGCAAGCCCGAGTCGACCCGCATCTCGAATCCATCGGGGTCTACCCCGCATTGATCTTTCGGAGCCGAAATCATCCGAAAGACGACCCTTTGGATCGAGTGTCAGCCGCAGAGGACTTATTTCAGCTGCTGTCGACGTGCTCTGCTTCTTGCGGTTCTTCAAAGAGTGTCGCGCTGCTCGCTCCGGTGGTTCGCGAAGTGTACAATGTGTCTGTTGATTTGTTCAAGAGGGATTTGTCGTTGAAGAGAGACAAGAAAGTGATGAGAAAGGTTAGGGATTTTGTGGGAACGATTCTTGGTTATATTAATTTGTGTTCTTGTGAGGATTCGGGTGAGAGTGATGGGTGGATTGGATTGAATCTGATTACGCCTTTTTTGGGATTAATTCGTGTTTGGATGAACTCAAATGAGGGGTTGGAATCTTTCTTGCCTTTAGTGAGCAATGACATTTTTGGAGGGCTTAGGGAGAATGTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

217

Amino Acids

24.1

Weight (kDa)

5.29

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11780
fragaria_vesca	FvH4_1g07060
malus_domestica	MD02G1074500.v1.1
prunus_persica	Prupe.7G213400_v2.0.a1
pyrus_communis	pycom02g05890 pycom15g18070
rosa_chinensis	RchiOBHm_Chr2g0092961 RchiOBHm_Chr4g0406051 RchiOBHm_Chr4g0425381
rosa_laevigata	RLG00000008045 RLG00000016353 RLG00000020789 RLG00000033390
rosa_multiflora	Rmu_co8270331.1_g000001 Rmu_sc0000596.1_g000010 Rmu_sc0000965.1_g000017 Rmu_sc0002862.1_g000003 Rmu_sc0002882.1_g000032 Rmu_sc0003902.1_g000018 Rmu_sc0006662.1_g000006 Rmu_sc0010963.1_g000006 Rmu_sc0012535.1_g000006
rosa_roxburghii	Rroxscaffold_2G00148670
rosa_rugosa	Rorug02G0030700
rosa_samantha	Rh1DG034900 Rh2AG076700 Rh2BG078000 Rh2CG080200 Rh2DG075300 Rh2DG566700 Rh3BG038800 Rh3CG266800 Rh3DG038000 Rh3DG262900 Rh6AG284700 Rh6BG048400 Rh6BG286100 Rh6CG287100 Rh7AG478700
rosa_wichuraiana	Rw2G006950 Rw3G003880 Rw3G021260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	186, 213, 305
AccII	CGCG	2 cut(s)	344, 366
AciI	CCGC	4 cut(s)	191, 219, 279, 324
AclWI	GGATC	1 cut(s)	273
AcsI	RAATTY	2 cut(s)	28, 158
AfaI	GTAC	1 cut(s)	374
AfiI	CCNNNNNNNGG	1 cut(s)	548
AgsI	TTSAA	4 cut(s)	333, 397, 415, 529
AjiI	CACGTC	1 cut(s)	309
AluBI	AGCT	2 cut(s)	85, 298
AluI	AGCT	2 cut(s)	85, 298
Alw21I	GWGCWC	1 cut(s)	314
Alw26I	GTCTC	1 cut(s)	414
AlwI	GGATC	1 cut(s)	273
AlwNI	CAGNNNCTG	1 cut(s)	301
Ama87I	CYCGRG	1 cut(s)	180
ApeKI	GCWGC	2 cut(s)	298, 346
ApoI	RAATTY	2 cut(s)	28, 158
ArsI	GACNNNNNNTTYG	2 cut(s)	129, 161
AseI	ATTAAT	2 cut(s)	477, 554
AspLEI	GCGC	1 cut(s)	346
AsuHPI	GGTGA	1 cut(s)	515
AvaI	CYCGRG	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	314
BbvI	GCAGC	2 cut(s)	285, 333
BccI	CCATC	2 cut(s)	212, 506
BcoDI	GTCTC	1 cut(s)	414
BisI	GCNGC	3 cut(s)	279, 299, 347
BlsI	GCNGC	3 cut(s)	280, 300, 348
BmeT110I	CYCGRG	1 cut(s)	180
BmgBI	CACGTC	1 cut(s)	309
BmiI	GGNNCC	2 cut(s)	22, 236
BmsI	GCATC	2 cut(s)	162, 202
BpmI	CTGGAG	1 cut(s)	18
Bpu10I	CCTNAGC	1 cut(s)	632
BpuEI	CTTGAG	1 cut(s)	65
BsaWI	WCCGGW	1 cut(s)	355
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
Bsc4I	CCNNNNNNNGG	1 cut(s)	548
Bse3DI	GCAATG	1 cut(s)	619
BseGI	GGATG	2 cut(s)	244, 573
BseLI	CCNNNNNNNGG	1 cut(s)	548
BseMI	GCAATG	1 cut(s)	619
BseXI	GCAGC	2 cut(s)	285, 333
Bsh1236I	CGCG	2 cut(s)	344, 366
BsiHKAI	GWGCWC	1 cut(s)	314
BsiHKCI	CYCGRG	1 cut(s)	180
BsiSI	CCGG	1 cut(s)	356
BslI	CCNNNNNNNGG	1 cut(s)	548
BsmAI	GTCTC	1 cut(s)	414
BsoBI	CYCGRG	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	314
Bsp1407I	TGTACA	1 cut(s)	372
Bsp143I	GATC	2 cut(s)	225, 265
Bsp68I	TCGCGA	1 cut(s)	366
BspACI	CCGC	4 cut(s)	191, 219, 279, 324
BspFNI	CGCG	2 cut(s)	344, 366
BspLI	GGNNCC	2 cut(s)	22, 236
BspPI	GGATC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	619
BsrGI	TGTACA	1 cut(s)	372
BssMI	GATC	2 cut(s)	225, 265
Bst6I	CTCTTC	1 cut(s)	410
BstAUI	TGTACA	1 cut(s)	372
BstC8I	GCNNGC	2 cut(s)	177, 351
BstDEI	CTNAG	1 cut(s)	632
BstF5I	GGATG	2 cut(s)	244, 573
BstFNI	CGCG	2 cut(s)	344, 366
BstHHI	GCGC	1 cut(s)	346
BstKTI	GATC	2 cut(s)	228, 268
BstMAI	GTCTC	1 cut(s)	414
BstMBI	GATC	2 cut(s)	225, 265
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstUI	CGCG	2 cut(s)	344, 366
BstV1I	GCAGC	2 cut(s)	285, 333
BtrI	CACGTC	1 cut(s)	309
BtsCI	GGATG	2 cut(s)	244, 573
BtuMI	TCGCGA	1 cut(s)	366
Cac8I	GCNNGC	2 cut(s)	177, 351
CaiI	CAGNNNCTG	1 cut(s)	301
CfoI	GCGC	1 cut(s)	346
Csp6I	GTAC	1 cut(s)	373
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	8 cut(s)	5, 21, 85, 179, 237, 278, 298, 631
CviKI_1	RGCY	8 cut(s)	5, 21, 85, 179, 237, 278, 298, 631
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	1 cut(s)	632
DpnI	GATC	2 cut(s)	227, 267
DpnII	GATC	2 cut(s)	225, 265
Eam1104I	CTCTTC	1 cut(s)	410
EarI	CTCTTC	1 cut(s)	410
Eco88I	CYCGRG	1 cut(s)	180
EcoRI	GAATTC	1 cut(s)	158
FaeI	CATG	1 cut(s)	52
FaiI	YATR	2 cut(s)	50, 474
FatI	CATG	1 cut(s)	48
FauI	CCCGC	2 cut(s)	198, 226
FblI	GTMKAC	3 cut(s)	186, 213, 305
Fnu4HI	GCNGC	3 cut(s)	279, 299, 347
FokI	GGATG	2 cut(s)	231, 580
Fsp4HI	GCNGC	3 cut(s)	279, 299, 347
GlaI	GCGC	1 cut(s)	345
GluI	GCNGC	3 cut(s)	279, 299, 347
GsuI	CTGGAG	1 cut(s)	18
HapII	CCGG	1 cut(s)	356
HhaI	GCGC	1 cut(s)	346
Hin1II	CATG	1 cut(s)	52
Hin6I	GCGC	1 cut(s)	344
HinP1I	GCGC	1 cut(s)	344
HincII	GTYRAC	2 cut(s)	187, 306
HindII	GTYRAC	2 cut(s)	187, 306
HinfI	GANTC	6 cut(s)	183, 200, 463, 497, 529, 590
HpaII	CCGG	1 cut(s)	356
HphI	GGTGA	1 cut(s)	515
Hpy166II	GTNNAC	4 cut(s)	187, 214, 306, 373
Hpy188I	TCNGA	4 cut(s)	115, 234, 249, 534
Hpy188III	TCNNGA	4 cut(s)	35, 197, 365, 397
Hpy8I	GTNNAC	4 cut(s)	187, 214, 306, 373
Hpy99I	CGWCG	1 cut(s)	310
HpyCH4IV	ACGT	1 cut(s)	308
HpyCH4V	TGCA	1 cut(s)	175
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
HpyF3I	CTNAG	1 cut(s)	632
HpySE526I	ACGT	1 cut(s)	308
Hsp92II	CATG	1 cut(s)	52
HspAI	GCGC	1 cut(s)	344
Kzo9I	GATC	2 cut(s)	225, 265
LmnI	GCTCC	3 cut(s)	26, 234, 358
LpnPI	CCDG	2 cut(s)	48, 369
Lsp1109I	GCAGC	2 cut(s)	285, 333
LweI	GCATC	2 cut(s)	162, 202
MaeII	ACGT	1 cut(s)	308
MalI	GATC	2 cut(s)	227, 267
MboI	GATC	2 cut(s)	225, 265
MboII	GAAGA	2 cut(s)	321, 427
MhlI	GDGCHC	1 cut(s)	314
MluCI	AATT	7 cut(s)	28, 117, 137, 158, 167, 478, 555
MlyI	GAGTC	1 cut(s)	192
MmeI	TCCRAC	1 cut(s)	567
MnlI	CCTC	7 cut(s)	89, 148, 277, 393, 487, 574, 620
MseI	TTAA	2 cut(s)	477, 554
MspA1I	CMGCKG	1 cut(s)	298
MspI	CCGG	1 cut(s)	356
MvnI	CGCG	2 cut(s)	344, 366
MwoI	GCNNNNNNNGC	1 cut(s)	350
NdeII	GATC	2 cut(s)	225, 265
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	2 cut(s)	22, 236
NruI	TCGCGA	1 cut(s)	366
PfeI	GAWTC	5 cut(s)	200, 463, 497, 529, 590
PkrI	GCNGC	3 cut(s)	280, 300, 348
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
PshBI	ATTAAT	2 cut(s)	477, 554
PspN4I	GGNNCC	2 cut(s)	22, 236
PstNI	CAGNNNCTG	1 cut(s)	301
PvuII	CAGCTG	1 cut(s)	298
RruI	TCGCGA	1 cut(s)	366
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
SalI	GTCGAC	2 cut(s)	185, 304
SaqAI	TTAA	2 cut(s)	477, 554
SatI	GCNGC	3 cut(s)	279, 299, 347
Sau3AI	GATC	2 cut(s)	225, 265
SchI	GAGTC	1 cut(s)	192
SduI	GDGCHC	1 cut(s)	314
SetI	ASST	6 cut(s)	81, 87, 108, 300, 311, 444
SfaNI	GCATC	2 cut(s)	162, 202
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	7 cut(s)	28, 117, 137, 158, 167, 478, 555
SsiI	CCGC	4 cut(s)	191, 219, 279, 324
TaiI	ACGT	1 cut(s)	311
TaqI	TCGA	4 cut(s)	186, 198, 268, 305
TasI	AATT	7 cut(s)	28, 117, 137, 158, 167, 478, 555
TatI	WGTACW	1 cut(s)	372
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	5 cut(s)	200, 463, 497, 529, 590
Tru1I	TTAA	2 cut(s)	477, 554
Tru9I	TTAA	2 cut(s)	477, 554
TseI	GCWGC	2 cut(s)	298, 346
TspDTI	ATGAA	2 cut(s)	65, 584
VspI	ATTAAT	2 cut(s)	477, 554
XapI	RAATTY	2 cut(s)	28, 158
XmiI	GTMKAC	3 cut(s)	186, 213, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.