Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8270331.1

Orthogroup ID

OG0002351

Physical Location & Seq

Genomic Coordinates Reverse (-)

162 .. 710

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8270331.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ctgattgccgccgtcaatgatggagtcgccgggcttaatgtaggcggaaagggcggcgatggttccgccagtttcaccatggttccatctctaattgagttcacgacttcctcaaattcaccaaactccaaaccccaaattaagctaagcccatcaattcagacagtcatagatgaaatccacaaggaaaaccccaaattctctcccttgattcaacaattctacaaacctatgcaagctcgggtcgacccgcctctccaatccatctgggtctacaccgcattgacatttcggagccggaaccacccgaaaggcgacatcttggaccgaattgcagccgcaaaggacttgtttcagctattcttctcttgctcagctccctgcggttgctcaaaaagcatcgcgctgctcgttccggtggtgcggttggcacacgacgttgttttggatttgtttaagagggaattggggttgaagaaagagaagaaagtgacgaaggaggggaagaatttggtgggagtgattatgggtaagtgtgtgctattctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

19.8

Weight (kDa)

9.44

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11780
fragaria_vesca	FvH4_1g07060
malus_domestica	MD02G1074500.v1.1
prunus_persica	Prupe.7G213400_v2.0.a1
pyrus_communis	pycom02g05890 pycom15g18070
rosa_chinensis	RchiOBHm_Chr2g0092961 RchiOBHm_Chr4g0406051 RchiOBHm_Chr4g0425381
rosa_laevigata	RLG00000008045 RLG00000016353 RLG00000020789 RLG00000033390
rosa_multiflora	Rmu_co8270331.1_g000001 Rmu_sc0000596.1_g000010 Rmu_sc0000965.1_g000017 Rmu_sc0002862.1_g000003 Rmu_sc0002882.1_g000032 Rmu_sc0003902.1_g000018 Rmu_sc0006662.1_g000006 Rmu_sc0010963.1_g000006 Rmu_sc0012535.1_g000006
rosa_roxburghii	Rroxscaffold_2G00148670
rosa_rugosa	Rorug02G0030700
rosa_samantha	Rh1DG034900 Rh2AG076700 Rh2BG078000 Rh2CG080200 Rh2DG075300 Rh2DG566700 Rh3BG038800 Rh3CG266800 Rh3DG038000 Rh3DG262900 Rh6AG284700 Rh6BG048400 Rh6BG286100 Rh6CG287100 Rh7AG478700
rosa_wichuraiana	Rw2G006950 Rw3G003880 Rw3G021260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	246, 273
AccII	CGCG	1 cut(s)	404
AciI	CCGC	9 cut(s)	9, 45, 54, 66, 251, 279, 339, 384, 424
AcsI	RAATTY	3 cut(s)	115, 197, 508
AgsI	TTSAA	2 cut(s)	215, 475
AluBI	AGCT	4 cut(s)	145, 239, 358, 377
AluI	AGCT	4 cut(s)	145, 239, 358, 377
Ama87I	CYCGRG	1 cut(s)	240
ApeKI	GCWGC	2 cut(s)	335, 406
ApoI	RAATTY	3 cut(s)	115, 197, 508
AspLEI	GCGC	1 cut(s)	406
AspS9I	GGNCC	1 cut(s)	325
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	2 cut(s)	67, 111
AvaI	CYCGRG	1 cut(s)	240
AvaII	GGWCC	1 cut(s)	325
BbvI	GCAGC	2 cut(s)	347, 393
BccI	CCATC	5 cut(s)	14, 53, 94, 160, 272
BcnI	CCSGG	1 cut(s)	31
BfaI	CTAG	1 cut(s)	547
BisI	GCNGC	5 cut(s)	9, 55, 336, 339, 407
BlpI	GCTNAGC	2 cut(s)	146, 373
BlsI	GCNGC	5 cut(s)	10, 56, 337, 340, 408
Bme1390I	CCNGG	1 cut(s)	31
Bme18I	GGWCC	1 cut(s)	325
BmeT110I	CYCGRG	1 cut(s)	240
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	4 cut(s)	64, 84, 296, 302
BmrFI	CCNGG	1 cut(s)	31
BmsI	GCATC	1 cut(s)	408
Bpu1102I	GCTNAGC	2 cut(s)	146, 373
BpuMI	CCSGG	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	78
BsaWI	WCCGGW	1 cut(s)	415
Bse1I	ACTGG	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	1 cut(s)	69
BseXI	GCAGC	2 cut(s)	347, 393
Bsh1236I	CGCG	1 cut(s)	404
BsiHKCI	CYCGRG	1 cut(s)	240
BsiSI	CCGG	3 cut(s)	30, 298, 416
BsoBI	CYCGRG	1 cut(s)	240
Bsp1720I	GCTNAGC	2 cut(s)	146, 373
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	9 cut(s)	9, 45, 54, 66, 251, 279, 339, 384, 424
BspCNI	CTCAG	1 cut(s)	386
BspFNI	CGCG	1 cut(s)	404
BspLI	GGNNCC	4 cut(s)	64, 84, 296, 302
BsrI	ACTGG	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	166
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	2 cut(s)	146, 373
BstDSI	CCRYGG	1 cut(s)	78
BstFNI	CGCG	1 cut(s)	404
BstHHI	GCGC	1 cut(s)	406
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 396
BstSCI	CCNGG	1 cut(s)	29
BstUI	CGCG	1 cut(s)	404
BstV1I	GCAGC	2 cut(s)	347, 393
BtgI	CCRYGG	1 cut(s)	78
BtgZI	GCGATG	2 cut(s)	72, 385
Cac8I	GCNNGC	1 cut(s)	237
CfoI	GCGC	1 cut(s)	406
Cfr13I	GGNCC	1 cut(s)	325
CviAII	CATG	1 cut(s)	79
CviJI	RGCY	8 cut(s)	34, 145, 150, 239, 297, 338, 358, 377
CviKI_1	RGCY	8 cut(s)	34, 145, 150, 239, 297, 338, 358, 377
DdeI	CTNAG	2 cut(s)	146, 373
EciI	GGCGGA	2 cut(s)	55, 60
Eco130I	CCWWGG	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	325
Eco88I	CYCGRG	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	1 cut(s)	82
FaiI	YATR	4 cut(s)	80, 170, 233, 527
FatI	CATG	1 cut(s)	78
FauI	CCCGC	1 cut(s)	258
FblI	GTMKAC	2 cut(s)	246, 273
Fnu4HI	GCNGC	5 cut(s)	9, 55, 336, 339, 407
Fsp4HI	GCNGC	5 cut(s)	9, 55, 336, 339, 407
FspBI	CTAG	1 cut(s)	547
GlaI	GCGC	1 cut(s)	405
GluI	GCNGC	5 cut(s)	9, 55, 336, 339, 407
HapII	CCGG	3 cut(s)	30, 298, 416
HhaI	GCGC	1 cut(s)	406
Hin1II	CATG	1 cut(s)	82
Hin6I	GCGC	1 cut(s)	404
HinP1I	GCGC	1 cut(s)	404
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	2 cut(s)	24, 211
HpaII	CCGG	3 cut(s)	30, 298, 416
HphI	GGTGA	2 cut(s)	67, 111
Hpy166II	GTNNAC	3 cut(s)	102, 247, 274
Hpy188I	TCNGA	2 cut(s)	162, 294
Hpy188III	TCNNGA	1 cut(s)	103
Hpy8I	GTNNAC	3 cut(s)	102, 247, 274
Hpy99I	CGWCG	1 cut(s)	440
HpyAV	CCTTC	1 cut(s)	490
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4IV	ACGT	1 cut(s)	438
HpyCH4V	TGCA	2 cut(s)	235, 335
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 396
HpyF3I	CTNAG	2 cut(s)	146, 373
HpySE526I	ACGT	1 cut(s)	438
Hsp92II	CATG	1 cut(s)	82
HspAI	GCGC	1 cut(s)	404
LmnI	GCTCC	2 cut(s)	294, 382
LpnPI	CCDG	6 cut(s)	43, 82, 253, 311, 394, 429
Lsp1109I	GCAGC	2 cut(s)	347, 393
LweI	GCATC	1 cut(s)	408
MaeI	CTAG	1 cut(s)	547
MaeII	ACGT	1 cut(s)	438
MaeIII	GTNAC	1 cut(s)	490
MboII	GAAGA	4 cut(s)	355, 487, 496, 517
MluCI	AATT	9 cut(s)	93, 115, 138, 156, 197, 218, 330, 464, 508
MlyI	GAGTC	1 cut(s)	33
MnlI	CCTC	4 cut(s)	121, 264, 453, 493
MseI	TTAA	3 cut(s)	36, 141, 456
MspI	CCGG	3 cut(s)	30, 298, 416
MspR9I	CCNGG	1 cut(s)	31
MvnI	CGCG	1 cut(s)	404
MwoI	GCNNNNNNNGC	2 cut(s)	51, 396
NciI	CCSGG	1 cut(s)	31
NcoI	CCATGG	1 cut(s)	78
NlaIII	CATG	1 cut(s)	82
NlaIV	GGNNCC	4 cut(s)	64, 84, 296, 302
NmuCI	GTSAC	1 cut(s)	490
PcsI	WCGNNNNNNNCGW	1 cut(s)	408
PfeI	GAWTC	1 cut(s)	211
PkrI	GCNGC	5 cut(s)	10, 56, 337, 340, 408
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PspN4I	GGNNCC	4 cut(s)	64, 84, 296, 302
PspPI	GGNCC	1 cut(s)	325
SalI	GTCGAC	1 cut(s)	245
SaqAI	TTAA	3 cut(s)	36, 141, 456
SatI	GCNGC	5 cut(s)	9, 55, 336, 339, 407
Sau96I	GGNCC	1 cut(s)	325
SchI	GAGTC	1 cut(s)	33
ScrFI	CCNGG	1 cut(s)	31
SetI	ASST	6 cut(s)	147, 232, 241, 360, 379, 441
SfaNI	GCATC	1 cut(s)	408
SinI	GGWCC	1 cut(s)	325
Sse9I	AATT	9 cut(s)	93, 115, 138, 156, 197, 218, 330, 464, 508
SsiI	CCGC	9 cut(s)	9, 45, 54, 66, 251, 279, 339, 384, 424
SspMI	CTAG	1 cut(s)	547
StyD4I	CCNGG	1 cut(s)	29
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	166
TaiI	ACGT	1 cut(s)	441
TaqI	TCGA	1 cut(s)	246
TaqII	GACCGA	1 cut(s)	342
TasI	AATT	9 cut(s)	93, 115, 138, 156, 197, 218, 330, 464, 508
TauI	GCSGC	3 cut(s)	11, 57, 341
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	3 cut(s)	36, 141, 456
Tru9I	TTAA	3 cut(s)	36, 141, 456
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	2 cut(s)	335, 406
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	1 cut(s)	189
VpaK11BI	GGWCC	1 cut(s)	325
XapI	RAATTY	3 cut(s)	115, 197, 508
XcmI	CCANNNNNNNNNTGG	1 cut(s)	76
XmiI	GTMKAC	2 cut(s)	246, 273
XspI	CTAG	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.