Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002351

Physical Location & Seq

Genomic Coordinates Forward (+)

5862195 .. 5864381

Gene Structure 2187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016353

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGGTTCCGTCTCTAATCGAGTTCACGAATTCCTCAAACCCTAACCCCCAAATTAAGCCGAGCCCATCAATTCAGACCGTTGTAGATGAAATCCACAAGGAAAACCCCAAATTCTCTCCCTTGATTCAACAATTCTACCAACCAATGCAATCTCGGGTCGACCCGCCTCTTGAATCCATCTGGGTCTACACCGCATTGACATTTCGGAGCCGGAACCACCCGAAAGACGACATCTTGGACCGAATCGCCGCCGCGAAGGACTTGTTTCAGCTACTCTCCTCTTGCTCAGCTCCCTGCGGTTGCTCAAAGAGCGTCGCGCTGCTCGCTCCGTTGGTGCGGTTGGCACACGACGTCGTTTTGGATTTGTTTAAGAGGGACTTGGGGTTGAAGAAAGAGAAGAAAGTGATGAAGGAGGTGAAGAATTTGGTGGGAGTGATTCTGGGGTTTATAAATGTGTGCTGTTCTAGCAGGGATTCGGGTCAGGACGAATCTTTGATTGATTCGAGTTCGGGTTGGTCTTTTTCGGGTTTAAGTTGTGTTTGGTTGAACAGAGATGAGAATGTTAGGAATTTGTTACCTTTAGTGAGTGAGGAGGTGATTGGTGGGCTTAGTGAGAGAGATGGGGATGTGAGTTACTTGGCTGGAGTTGTTATTGCAGAGGTTTTTTTGTTGAGAATGTGCTTGAATTGCAAAGCTGGGACTTCAGGGGAGGTGTTGGAGACAGAGTTGAGGACTTGGGCTGTTGGTTCCATTACTGGGTTCCAGAATGTTTATGTTTTCGAGGTCCTTTTGAGGATGCTGCTGGAGAACACTTTGCCTGTTACCTCCCTTTTGAGTTCTGCAGACGAAGTTTTGTTGAGGAAAGTGCTGTATGATGCCATCATATTGGTTGAATATTCTTTCCTTAATCCTGAGAAAGCAATTCACATATCTGCTGAGCACATGAAAATGATTGCCATGAGAAGATTGATTCTTGCCCATGAAGCAGTGGAGTATTTTAGGGAGCATGGTGATCAGAGGAGAAGCATCTCTTATACAACTGCATTTTCCGATTCACAATTGTATTCCCAAATTGTTAAGTGGGTAAAGAATCAGATTCCTGTGGAGGATAGCTCAGTCAAATCAGAGGGAACCTCACCTAAAGCTGTTATAAAATGGCTTCTTAACCTCGAGCGTCAAGGCTTCTTAGCATTTGGTGATAGTATCTTGAAGTATCATAGTCTTGATATGTCTAAACCACCAGCTTCGAAGTTAGACAGCAATGAAGTTGATGAAGACCCTATCTTTTACATCGATAACGAGAGGCAAGGAGAACATACGGATGATGGAAAAGTTAATGAATACATTAGTGCTGCATTTTTAGCTGCTGCCAATACAATGACATCAGCGGACAAAAGAGGGAAAAAACGGAAAGGGGAAAACAGCGAGAGTGAAGAGGAGAGTTCACTCTCTGATGAGGACTCCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

490

Amino Acids

54.64

Weight (kDa)

5.14

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11780
fragaria_vesca	FvH4_1g07060
malus_domestica	MD02G1074500.v1.1
prunus_persica	Prupe.7G213400_v2.0.a1
pyrus_communis	pycom02g05890 pycom15g18070
rosa_chinensis	RchiOBHm_Chr2g0092961 RchiOBHm_Chr4g0406051 RchiOBHm_Chr4g0425381
rosa_laevigata	RLG00000008045 RLG00000016353 RLG00000020789 RLG00000033390
rosa_multiflora	Rmu_co8270331.1_g000001 Rmu_sc0000596.1_g000010 Rmu_sc0000965.1_g000017 Rmu_sc0002862.1_g000003 Rmu_sc0002882.1_g000032 Rmu_sc0003902.1_g000018 Rmu_sc0006662.1_g000006 Rmu_sc0010963.1_g000006 Rmu_sc0012535.1_g000006
rosa_roxburghii	Rroxscaffold_2G00148670
rosa_rugosa	Rorug02G0030700
rosa_samantha	Rh1DG034900 Rh2AG076700 Rh2BG078000 Rh2CG080200 Rh2DG075300 Rh2DG566700 Rh3BG038800 Rh3CG266800 Rh3DG038000 Rh3DG262900 Rh6AG284700 Rh6BG048400 Rh6BG286100 Rh6CG287100 Rh7AG478700
rosa_wichuraiana	Rw2G006950 Rw3G003880 Rw3G021260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	449, 1151
AatII	GACGTC	1 cut(s)	354
AccI	GTMKAC	2 cut(s)	159, 186
AccII	CGCG	2 cut(s)	254, 317
AciI	CCGC	7 cut(s)	164, 192, 249, 252, 297, 337, 1388
AcsI	RAATTY	4 cut(s)	28, 110, 421, 568
AcuI	CTGAAG	1 cut(s)	687
AcyI	GRCGYC	1 cut(s)	351
AfiI	CCNNNNNNNGG	1 cut(s)	756
AgsI	TTSAA	7 cut(s)	128, 173, 388, 547, 685, 893, 1210
AluBI	AGCT	7 cut(s)	271, 290, 695, 1113, 1145, 1244, 1364
AluI	AGCT	7 cut(s)	271, 290, 695, 1113, 1145, 1244, 1364
Alw21I	GWGCWC	1 cut(s)	942
Alw26I	GTCTC	2 cut(s)	15, 713
Ama87I	CYCGRG	2 cut(s)	153, 1169
ApeKI	GCWGC	5 cut(s)	319, 799, 1352, 1364, 1367
ApoI	RAATTY	4 cut(s)	28, 110, 421, 568
AspLEI	GCGC	1 cut(s)	319
AspS9I	GGNCC	2 cut(s)	238, 784
AsuHPI	GGTGA	5 cut(s)	427, 607, 1022, 1128, 1208
AsuII	TTCGAA	1 cut(s)	1247
AvaI	CYCGRG	2 cut(s)	153, 1169
AvaII	GGWCC	2 cut(s)	238, 784
BanII	GRGCYC	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	1281
Bbv12I	GWGCWC	1 cut(s)	942
BbvI	GCAGC	5 cut(s)	306, 786, 1339, 1351, 1354
BccI	CCATC	5 cut(s)	73, 185, 614, 887, 1319
BclI	TGATCA	1 cut(s)	1012
BcoDI	GTCTC	2 cut(s)	15, 713
BfaI	CTAG	1 cut(s)	465
BfmI	CTRYAG	1 cut(s)	840
BisI	GCNGC	7 cut(s)	249, 252, 320, 800, 1353, 1365, 1368
BlpI	GCTNAGC	2 cut(s)	286, 936
BlsI	GCNGC	7 cut(s)	250, 253, 321, 801, 1354, 1366, 1369
Bme18I	GGWCC	2 cut(s)	238, 784
BmeT110I	CYCGRG	2 cut(s)	153, 1169
BmgT120I	GGNCC	2 cut(s)	238, 784
BmiI	GGNNCC	6 cut(s)	6, 209, 215, 748, 761, 1132
BmrI	ACTGGG	1 cut(s)	765
BmsI	GCATC	3 cut(s)	786, 865, 1035
BmuI	ACTGGG	1 cut(s)	765
BpiI	GAAGAC	1 cut(s)	1281
BplI	GAGNNNNNCTC	4 cut(s)	1097, 1129, 1118, 1150
BpmI	CTGGAG	2 cut(s)	663, 824
Bpu1102I	GCTNAGC	2 cut(s)	286, 936
Bpu14I	TTCGAA	1 cut(s)	1247
Bsa29I	ATCGAT	1 cut(s)	1293
BsaHI	GRCGYC	1 cut(s)	351
BsaXI	ACNNNNNCTCC	2 cut(s)	710, 740
Bsc4I	CCNNNNNNNGG	1 cut(s)	756
Bse1I	ACTGG	1 cut(s)	760
Bse3DI	GCAATG	1 cut(s)	1267
BseCI	ATCGAT	1 cut(s)	1293
BseGI	GGATG	3 cut(s)	631, 801, 1327
BseLI	CCNNNNNNNGG	1 cut(s)	756
BseMI	GCAATG	1 cut(s)	1267
BseMII	CTCAG	4 cut(s)	300, 903, 927, 1128
BseNI	ACTGG	1 cut(s)	760
BseRI	GAGGAG	4 cut(s)	268, 605, 1033, 1451
BseXI	GCAGC	5 cut(s)	306, 786, 1339, 1351, 1354
BseYI	CCCAGC	1 cut(s)	695
Bsh1236I	CGCG	2 cut(s)	254, 317
BshVI	ATCGAT	1 cut(s)	1293
BsiHKAI	GWGCWC	1 cut(s)	942
BsiHKCI	CYCGRG	2 cut(s)	153, 1169
BsiSI	CCGG	1 cut(s)	211
BslFI	GGGAC	2 cut(s)	389, 712
BslI	CCNNNNNNNGG	1 cut(s)	756
BsmAI	GTCTC	2 cut(s)	15, 713
BsmBI	CGTCTC	1 cut(s)	15
BsmFI	GGGAC	2 cut(s)	389, 712
BsoBI	CYCGRG	2 cut(s)	153, 1169
Bsp119I	TTCGAA	1 cut(s)	1247
Bsp1286I	GDGCHC	2 cut(s)	65, 942
Bsp143I	GATC	1 cut(s)	1012
Bsp1720I	GCTNAGC	2 cut(s)	286, 936
BspACI	CCGC	7 cut(s)	164, 192, 249, 252, 297, 337, 1388
BspCNI	CTCAG	4 cut(s)	299, 904, 928, 1127
BspDI	ATCGAT	1 cut(s)	1293
BspFNI	CGCG	2 cut(s)	254, 317
BspLI	GGNNCC	6 cut(s)	6, 209, 215, 748, 761, 1132
BspMAI	CTGCAG	1 cut(s)	844
BspT104I	TTCGAA	1 cut(s)	1247
BsrDI	GCAATG	1 cut(s)	1267
BsrI	ACTGG	1 cut(s)	760
BssMI	GATC	1 cut(s)	1012
BssNI	GRCGYC	1 cut(s)	351
Bst4CI	ACNGT	1 cut(s)	79
Bst6I	CTCTTC	1 cut(s)	1428
BstACI	GRCGYC	1 cut(s)	351
BstBI	TTCGAA	1 cut(s)	1247
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	6 cut(s)	286, 608, 912, 936, 1114, 1186
BstF5I	GGATG	3 cut(s)	631, 801, 1327
BstFNI	CGCG	2 cut(s)	254, 317
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	1 cut(s)	1015
BstMAI	GTCTC	2 cut(s)	15, 713
BstMBI	GATC	1 cut(s)	1012
BstMWI	GCNNNNNNNGC	6 cut(s)	309, 323, 465, 687, 983, 1361
BstSFI	CTRYAG	1 cut(s)	840
BstUI	CGCG	2 cut(s)	254, 317
BstV1I	GCAGC	5 cut(s)	306, 786, 1339, 1351, 1354
BstV2I	GAAGAC	1 cut(s)	1281
BstXI	CCANNNNNNTGG	1 cut(s)	886
Bsu15I	ATCGAT	1 cut(s)	1293
BsuTUI	ATCGAT	1 cut(s)	1293
BtsCI	GGATG	3 cut(s)	631, 801, 1327
BtsI	GCAGTG	1 cut(s)	993
BtsIMutI	CAGTG	1 cut(s)	993
Cac8I	GCNNGC	1 cut(s)	324
CfoI	GCGC	1 cut(s)	319
Cfr13I	GGNCC	2 cut(s)	238, 784
ClaI	ATCGAT	1 cut(s)	1293
CseI	GACGC	2 cut(s)	301, 1163
CviAII	CATG	4 cut(s)	943, 958, 980, 1007
DdeI	CTNAG	6 cut(s)	286, 608, 912, 936, 1114, 1186
DpnI	GATC	1 cut(s)	1014
DpnII	GATC	1 cut(s)	1012
Eam1104I	CTCTTC	1 cut(s)	1428
EarI	CTCTTC	1 cut(s)	1428
Eco24I	GRGCYC	1 cut(s)	65
Eco47I	GGWCC	2 cut(s)	238, 784
Eco57I	CTGAAG	1 cut(s)	687
Eco88I	CYCGRG	2 cut(s)	153, 1169
EcoO109I	RGGNCCY	1 cut(s)	784
EcoRI	GAATTC	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	65
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	4 cut(s)	946, 961, 983, 1010
FalI	AAGNNNNNCTT	4 cut(s)	362, 394, 1015, 1047
FaqI	GGGAC	2 cut(s)	389, 712
FatI	CATG	4 cut(s)	942, 957, 979, 1006
FauI	CCCGC	1 cut(s)	171
FbaI	TGATCA	1 cut(s)	1012
FblI	GTMKAC	2 cut(s)	159, 186
Fnu4HI	GCNGC	7 cut(s)	249, 252, 320, 800, 1353, 1365, 1368
FokI	GGATG	3 cut(s)	638, 808, 1334
FriOI	GRGCYC	1 cut(s)	65
Fsp4HI	GCNGC	7 cut(s)	249, 252, 320, 800, 1353, 1365, 1368
FspBI	CTAG	1 cut(s)	465
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	7 cut(s)	249, 252, 320, 800, 1353, 1365, 1368
GsaI	CCCAGC	1 cut(s)	699
GsuI	CTGGAG	2 cut(s)	663, 824
HapII	CCGG	1 cut(s)	211
HgaI	GACGC	2 cut(s)	301, 1163
HhaI	GCGC	1 cut(s)	319
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	4 cut(s)	946, 961, 983, 1010
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HpaII	CCGG	1 cut(s)	211
HphI	GGTGA	5 cut(s)	427, 607, 1022, 1128, 1208
Hpy166II	GTNNAC	4 cut(s)	24, 160, 187, 1445
Hpy188I	TCNGA	8 cut(s)	75, 207, 1017, 1051, 1095, 1126, 1453, 1465
Hpy188III	TCNNGA	7 cut(s)	25, 170, 482, 763, 911, 1207, 1223
Hpy8I	GTNNAC	4 cut(s)	24, 160, 187, 1445
Hpy99I	CGWCG	3 cut(s)	317, 353, 356
HpyAV	CCTTC	2 cut(s)	250, 403
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	6 cut(s)	148, 656, 690, 842, 1043, 1355
HpyF10VI	GCNNNNNNNGC	6 cut(s)	309, 323, 465, 687, 983, 1361
HpyF3I	CTNAG	6 cut(s)	286, 608, 912, 936, 1114, 1186
HpySE526I	ACGT	1 cut(s)	351
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	4 cut(s)	946, 961, 983, 1010
HspAI	GCGC	1 cut(s)	317
Ksp22I	TGATCA	1 cut(s)	1012
Kzo9I	GATC	1 cut(s)	1012
LmnI	GCTCC	4 cut(s)	207, 295, 331, 1003
Lsp1109I	GCAGC	5 cut(s)	306, 786, 1339, 1351, 1354
LweI	GCATC	3 cut(s)	786, 865, 1035
MaeI	CTAG	1 cut(s)	465
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	3 cut(s)	573, 632, 820
MalI	GATC	1 cut(s)	1014
MboI	GATC	1 cut(s)	1012
MboII	GAAGA	6 cut(s)	400, 409, 430, 975, 1286, 1445
MfeI	CAATTG	1 cut(s)	1058
MhlI	GDGCHC	2 cut(s)	65, 942
MlyI	GAGTC	1 cut(s)	1454
MmeI	TCCRAC	1 cut(s)	696
MseI	TTAA	7 cut(s)	54, 369, 530, 906, 1077, 1164, 1335
MslI	CAYNNNNRTG	2 cut(s)	947, 1320
MspA1I	CMGCKG	1 cut(s)	1388
MspI	CCGG	1 cut(s)	211
MunI	CAATTG	1 cut(s)	1058
MvnI	CGCG	2 cut(s)	254, 317
MwoI	GCNNNNNNNGC	6 cut(s)	309, 323, 465, 687, 983, 1361
NdeII	GATC	1 cut(s)	1012
NlaIII	CATG	4 cut(s)	946, 961, 983, 1010
NlaIV	GGNNCC	6 cut(s)	6, 209, 215, 748, 761, 1132
NmeAIII	GCCGAG	1 cut(s)	84
NspV	TTCGAA	1 cut(s)	1247
PaeR7I	CTCGAG	1 cut(s)	1169
PkrI	GCNGC	7 cut(s)	250, 253, 321, 801, 1354, 1366, 1369
PleI	GAGTC	1 cut(s)	1454
PpsI	GAGTC	1 cut(s)	1454
PpuMI	RGGWCCY	1 cut(s)	784
PsiI	TTATAA	2 cut(s)	449, 1151
Psp5II	RGGWCCY	1 cut(s)	784
PspFI	CCCAGC	1 cut(s)	695
PspN4I	GGNNCC	6 cut(s)	6, 209, 215, 748, 761, 1132
PspPI	GGNCC	2 cut(s)	238, 784
PspPPI	RGGWCCY	1 cut(s)	784
PspXI	VCTCGAGB	1 cut(s)	1169
PstI	CTGCAG	1 cut(s)	844
RseI	CAYNNNNRTG	2 cut(s)	947, 1320
SalI	GTCGAC	1 cut(s)	158
SaqAI	TTAA	7 cut(s)	54, 369, 530, 906, 1077, 1164, 1335
SatI	GCNGC	7 cut(s)	249, 252, 320, 800, 1353, 1365, 1368
Sau3AI	GATC	1 cut(s)	1012
Sau96I	GGNCC	2 cut(s)	238, 784
SchI	GAGTC	1 cut(s)	1454
SduI	GDGCHC	2 cut(s)	65, 942
SfaNI	GCATC	3 cut(s)	786, 865, 1035
SfcI	CTRYAG	1 cut(s)	840
Sfr274I	CTCGAG	1 cut(s)	1169
SfuI	TTCGAA	1 cut(s)	1247
SinI	GGWCC	2 cut(s)	238, 784
SlaI	CTCGAG	1 cut(s)	1169
SmiMI	CAYNNNNRTG	2 cut(s)	947, 1320
SmlI	CTYRAG	1 cut(s)	1169
SmoI	CTYRAG	1 cut(s)	1169
SsiI	CCGC	7 cut(s)	164, 192, 249, 252, 297, 337, 1388
SspI	AATATT	1 cut(s)	896
SspMI	CTAG	1 cut(s)	465
TaaI	ACNGT	1 cut(s)	79
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	7 cut(s)	18, 159, 503, 780, 1170, 1247, 1293
TaqII	GACCGA	1 cut(s)	255
TauI	GCSGC	2 cut(s)	251, 254
Tru1I	TTAA	7 cut(s)	54, 369, 530, 906, 1077, 1164, 1335
Tru9I	TTAA	7 cut(s)	54, 369, 530, 906, 1077, 1164, 1335
TscAI	CASTG	1 cut(s)	993
TseI	GCWGC	5 cut(s)	319, 799, 1352, 1364, 1367
TspDTI	ATGAA	7 cut(s)	102, 422, 959, 996, 1278, 1287, 1353
TspGWI	ACGGA	3 cut(s)	318, 1334, 1423
TspRI	CASTG	1 cut(s)	993
VpaK11BI	GGWCC	2 cut(s)	238, 784
XapI	RAATTY	4 cut(s)	28, 110, 421, 568
XhoI	CTCGAG	1 cut(s)	1169
XmiI	GTMKAC	2 cut(s)	159, 186
XspI	CTAG	1 cut(s)	465
ZraI	GACGTC	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.