Rh6AG284700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002351
Physical Location & Seq
Forward (+)
48068786 .. 48069355
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG284700.1

Sequence Viewer

Length: 489 bp
ATGCAATCTCGGGTCAACCCGCCTCTCGAATCTATCTGGGTCTACACCACATTGACATTTCGGAGCTGGAACCACCCAAAAGGTGACATCTTGGACCGAATCGCCGCGGCAAAGGACTTGTTTCAGCTGCTCTCCTCTTGCTCAGCTCCTTGCGGTTCCTCAAAGAGCGTCACGTTGCTCATTCAGGTAGTGCGGTTGGCACACGATGTCGTTTTGGATTTGTTTAAGAGGGAGTTGGGGTTGAAGGATTCGGGTCAGGAGGAACCTTTGATTGATTCGAGTTCGGGTTGGTCTTTTTCGGGTTTAAGTTGTGTTTGGTTGAACAAAGATGAGAATTTTAGGAATTTGTTACCTTCAGTGAGTGAGGAGGTGATTGGTGAGCTTAGTGAGAGAGATGGGGATGTGAGCTACTTGGCTGGAGTTGTTATTGCAGAGGTTTTTTTGTTGAGACTGTGCTTGAATTGCAAAGCTGGGACTTCAGGGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

17.8

Weight (kDa)

4.92

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 42
AccII CGCG 1 cut(s) 107
AciI CCGC 5 cut(s) 20, 105, 107, 153, 193
AcsI RAATTY 2 cut(s) 334, 343
AcuI CTGAAG 2 cut(s) 339, 462
AgsI TTSAA 3 cut(s) 244, 322, 460
AluBI AGCT 6 cut(s) 66, 127, 146, 382, 408, 470
AluI AGCT 6 cut(s) 66, 127, 146, 382, 408, 470
Alw26I GTCTC 1 cut(s) 442
Ama87I CYCGRG 1 cut(s) 9
ApeKI GCWGC 1 cut(s) 127
ApoI RAATTY 2 cut(s) 334, 343
AspS9I GGNCC 1 cut(s) 94
AsuHPI GGTGA 3 cut(s) 95, 382, 389
AvaI CYCGRG 1 cut(s) 9
AvaII GGWCC 1 cut(s) 94
BbvI GCAGC 1 cut(s) 114
BccI CCATC 1 cut(s) 389
BcoDI GTCTC 1 cut(s) 442
BisI GCNGC 3 cut(s) 105, 108, 128
BlpI GCTNAGC 1 cut(s) 142
BlsI GCNGC 3 cut(s) 106, 109, 129
Bme18I GGWCC 1 cut(s) 94
BmeT110I CYCGRG 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 94
BmiI GGNNCC 3 cut(s) 71, 157, 264
BpmI CTGGAG 1 cut(s) 438
Bpu1102I GCTNAGC 1 cut(s) 142
BsaJI CCNNGG 1 cut(s) 105
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 1 cut(s) 406
BseMII CTCAG 1 cut(s) 156
BseRI GAGGAG 2 cut(s) 124, 380
BseXI GCAGC 1 cut(s) 114
BseYI CCCAGC 1 cut(s) 470
Bsh1236I CGCG 1 cut(s) 107
BsiHKCI CYCGRG 1 cut(s) 9
BsmAI GTCTC 1 cut(s) 442
BsoBI CYCGRG 1 cut(s) 9
Bsp1720I GCTNAGC 1 cut(s) 142
BspACI CCGC 5 cut(s) 20, 105, 107, 153, 193
BspCNI CTCAG 1 cut(s) 155
BspFNI CGCG 1 cut(s) 107
BspLI GGNNCC 3 cut(s) 71, 157, 264
BssECI CCNNGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 453
BstDEI CTNAG 2 cut(s) 142, 383
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 1 cut(s) 406
BstFNI CGCG 1 cut(s) 107
BstMAI GTCTC 1 cut(s) 442
BstMWI GCNNNNNNNGC 1 cut(s) 462
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 114
BtgI CCRYGG 1 cut(s) 105
BtsCI GGATG 1 cut(s) 406
BtsIMutI CAGTG 1 cut(s) 363
Cfr13I GGNCC 1 cut(s) 94
Cfr42I CCGCGG 1 cut(s) 108
CseI GACGC 1 cut(s) 157
CviJI RGCY 7 cut(s) 66, 127, 146, 382, 408, 416, 470
CviKI_1 RGCY 7 cut(s) 66, 127, 146, 382, 408, 416, 470
DdeI CTNAG 2 cut(s) 142, 383
Eco47I GGWCC 1 cut(s) 94
Eco57I CTGAAG 2 cut(s) 339, 462
Eco88I CYCGRG 1 cut(s) 9
FauI CCCGC 1 cut(s) 27
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 3 cut(s) 105, 108, 128
FokI GGATG 1 cut(s) 413
Fsp4HI GCNGC 3 cut(s) 105, 108, 128
GluI GCNGC 3 cut(s) 105, 108, 128
GsaI CCCAGC 1 cut(s) 474
GsuI CTGGAG 1 cut(s) 438
HgaI GACGC 1 cut(s) 157
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 4 cut(s) 29, 99, 248, 275
HphI GGTGA 3 cut(s) 95, 382, 389
Hpy166II GTNNAC 2 cut(s) 16, 43
Hpy188I TCNGA 1 cut(s) 63
Hpy188III TCNNGA 2 cut(s) 26, 257
Hpy8I GTNNAC 2 cut(s) 16, 43
HpyAV CCTTC 2 cut(s) 238, 363
HpyCH4III ACNGT 1 cut(s) 453
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 3 cut(s) 4, 431, 465
HpyF10VI GCNNNNNNNGC 1 cut(s) 462
HpyF3I CTNAG 2 cut(s) 142, 383
HpySE526I ACGT 1 cut(s) 173
KspI CCGCGG 1 cut(s) 108
LmnI GCTCC 2 cut(s) 63, 151
LpnPI CCDG 7 cut(s) 22, 52, 170, 242, 402, 456, 465
Lsp1109I GCAGC 1 cut(s) 114
MaeII ACGT 1 cut(s) 173
MaeIII GTNAC 3 cut(s) 83, 169, 348
MluCI AATT 3 cut(s) 334, 343, 460
MnlI CCTC 8 cut(s) 33, 145, 169, 222, 253, 358, 361, 427
MseI TTAA 2 cut(s) 225, 305
MspA1I CMGCKG 2 cut(s) 107, 127
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 1 cut(s) 462
NlaIV GGNNCC 3 cut(s) 71, 157, 264
NmuCI GTSAC 2 cut(s) 83, 169
PfeI GAWTC 4 cut(s) 29, 99, 248, 275
PkrI GCNGC 3 cut(s) 106, 109, 129
PspFI CCCAGC 1 cut(s) 470
PspN4I GGNNCC 3 cut(s) 71, 157, 264
PspPI GGNCC 1 cut(s) 94
PvuII CAGCTG 1 cut(s) 127
SacII CCGCGG 1 cut(s) 108
SaqAI TTAA 2 cut(s) 225, 305
SatI GCNGC 3 cut(s) 105, 108, 128
Sau96I GGNCC 1 cut(s) 94
Sfr303I CCGCGG 1 cut(s) 108
SgrBI CCGCGG 1 cut(s) 108
SinI GGWCC 1 cut(s) 94
Sse9I AATT 3 cut(s) 334, 343, 460
SsiI CCGC 5 cut(s) 20, 105, 107, 153, 193
TaaI ACNGT 1 cut(s) 453
TaiI ACGT 1 cut(s) 176
TaqI TCGA 2 cut(s) 27, 278
TaqII GACCGA 1 cut(s) 111
TasI AATT 3 cut(s) 334, 343, 460
TauI GCSGC 2 cut(s) 107, 110
TfiI GAWTC 4 cut(s) 29, 99, 248, 275
Tru1I TTAA 2 cut(s) 225, 305
Tru9I TTAA 2 cut(s) 225, 305
TscAI CASTG 1 cut(s) 363
TseFI GTSAC 2 cut(s) 83, 169
TseI GCWGC 1 cut(s) 127
Tsp45I GTSAC 2 cut(s) 83, 169
TspRI CASTG 1 cut(s) 363
VpaK11BI GGWCC 1 cut(s) 94
XapI RAATTY 2 cut(s) 334, 343
XmiI GTMKAC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.