Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002351

Physical Location & Seq

Genomic Coordinates Reverse (-)

79591151 .. 79591826

Gene Structure 676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG566700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGCAAGCTCGGGTCGACCCGCCTCTCGAATCCATCTGGGTCTACACCGCATTGACATTTCGGAGCCGGAACCACCCGAAAGGCGACATCTTGGACCGAATCGCCGCTGCAAAGGACTTGTTTCAGCTACTCTCCTCTTGCTCAGCTCCCTGCTGTTGCTCAAAAAGATTCGCGCTGCTCGTTCAGGTGGTGCGGTTGGCACACGACGTTGTTTTGGATTTGTTTAAGAGGGAATTGGGGTTTAAGAAAGAGAAGAAAGTGACGAAGGAGGTGAATAATTTGGTGGGAGTGATTATGGGGTTTATAAGTGTGTGCTGTTCTAGCAGGGATTTGGGTCAGGAGGATCCTTTGATTGATTCGAGTTCGGGGGAGGTGTTGAAGACAGAGTTGAGGACTTGGGCTGTCAACAGGGGCGCCTGCCTTGACGAGAATCGTCATCTGGGGCGTTGGAGGGAGATGACGAAGTCTTTGGGGTTGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

18.04

Weight (kDa)

8.89

Isoelectric Point (pI)

33.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11780
fragaria_vesca	FvH4_1g07060
malus_domestica	MD02G1074500.v1.1
prunus_persica	Prupe.7G213400_v2.0.a1
pyrus_communis	pycom02g05890 pycom15g18070
rosa_chinensis	RchiOBHm_Chr2g0092961 RchiOBHm_Chr4g0406051 RchiOBHm_Chr4g0425381
rosa_laevigata	RLG00000008045 RLG00000016353 RLG00000020789 RLG00000033390
rosa_multiflora	Rmu_co8270331.1_g000001 Rmu_sc0000596.1_g000010 Rmu_sc0000965.1_g000017 Rmu_sc0002862.1_g000003 Rmu_sc0002882.1_g000032 Rmu_sc0003902.1_g000018 Rmu_sc0006662.1_g000006 Rmu_sc0010963.1_g000006 Rmu_sc0012535.1_g000006
rosa_roxburghii	Rroxscaffold_2G00148670
rosa_rugosa	Rorug02G0030700
rosa_samantha	Rh1DG034900 Rh2AG076700 Rh2BG078000 Rh2CG080200 Rh2DG075300 Rh2DG566700 Rh3BG038800 Rh3CG266800 Rh3DG038000 Rh3DG262900 Rh6AG284700 Rh6BG048400 Rh6BG286100 Rh6CG287100 Rh7AG478700
rosa_wichuraiana	Rw2G006950 Rw3G003880 Rw3G021260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	305
AccB1I	GGYRCC	1 cut(s)	413
AccI	GTMKAC	2 cut(s)	15, 42
AccII	CGCG	1 cut(s)	173
AciI	CCGC	4 cut(s)	20, 48, 105, 193
AclWI	GGATC	2 cut(s)	338, 351
AcyI	GRCGYC	1 cut(s)	414
AfaI	GTAC	1 cut(s)	479
AgsI	TTSAA	1 cut(s)	379
AluBI	AGCT	3 cut(s)	8, 127, 146
AluI	AGCT	3 cut(s)	8, 127, 146
AlwI	GGATC	2 cut(s)	338, 351
Ama87I	CYCGRG	1 cut(s)	9
ApeKI	GCWGC	2 cut(s)	107, 175
ArsI	GACNNNNNNTTYG	2 cut(s)	451, 483
AspLEI	GCGC	2 cut(s)	175, 416
AspS9I	GGNCC	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	283
AvaI	CYCGRG	1 cut(s)	9
AvaII	GGWCC	1 cut(s)	94
BamHI	GGATCC	1 cut(s)	343
BanI	GGYRCC	1 cut(s)	413
BbsI	GAAGAC	1 cut(s)	386
BbvI	GCAGC	2 cut(s)	94, 162
BccI	CCATC	1 cut(s)	41
BfaI	CTAG	1 cut(s)	321
BfoI	RGCGCY	1 cut(s)	417
BisI	GCNGC	3 cut(s)	105, 108, 176
BlpI	GCTNAGC	1 cut(s)	142
BlsI	GCNGC	3 cut(s)	106, 109, 177
Bme18I	GGWCC	1 cut(s)	94
BmeT110I	CYCGRG	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	4 cut(s)	65, 71, 345, 415
BpiI	GAAGAC	1 cut(s)	386
Bpu1102I	GCTNAGC	1 cut(s)	142
BsaHI	GRCGYC	1 cut(s)	414
BseMII	CTCAG	1 cut(s)	156
BseRI	GAGGAG	1 cut(s)	124
BseXI	GCAGC	2 cut(s)	94, 162
Bsh1236I	CGCG	1 cut(s)	173
BshNI	GGYRCC	1 cut(s)	413
BsiHKCI	CYCGRG	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	67
BsoBI	CYCGRG	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	343
Bsp1720I	GCTNAGC	1 cut(s)	142
BspACI	CCGC	4 cut(s)	20, 48, 105, 193
BspCNI	CTCAG	1 cut(s)	155
BspFNI	CGCG	1 cut(s)	173
BspLI	GGNNCC	4 cut(s)	65, 71, 345, 415
BspPI	GGATC	2 cut(s)	338, 351
BspT107I	GGYRCC	1 cut(s)	413
BssMI	GATC	1 cut(s)	343
BssNI	GRCGYC	1 cut(s)	414
BstACI	GRCGYC	1 cut(s)	414
BstC8I	GCNNGC	2 cut(s)	6, 418
BstDEI	CTNAG	1 cut(s)	142
BstFNI	CGCG	1 cut(s)	173
BstH2I	RGCGCY	1 cut(s)	417
BstHHI	GCGC	2 cut(s)	175, 416
BstKTI	GATC	1 cut(s)	346
BstMBI	GATC	1 cut(s)	343
BstMWI	GCNNNNNNNGC	1 cut(s)	321
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	2 cut(s)	94, 162
BstV2I	GAAGAC	1 cut(s)	386
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
Cac8I	GCNNGC	2 cut(s)	6, 418
CfoI	GCGC	2 cut(s)	175, 416
Cfr13I	GGNCC	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	478
CviJI	RGCY	5 cut(s)	8, 66, 127, 146, 401
CviKI_1	RGCY	5 cut(s)	8, 66, 127, 146, 401
CviQI	GTAC	1 cut(s)	478
DdeI	CTNAG	1 cut(s)	142
DinI	GGCGCC	1 cut(s)	415
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	94
Eco88I	CYCGRG	1 cut(s)	9
EgeI	GGCGCC	1 cut(s)	415
EheI	GGCGCC	1 cut(s)	415
FaiI	YATR	2 cut(s)	296, 305
FauI	CCCGC	1 cut(s)	27
FblI	GTMKAC	2 cut(s)	15, 42
Fnu4HI	GCNGC	3 cut(s)	105, 108, 176
Fsp4HI	GCNGC	3 cut(s)	105, 108, 176
FspBI	CTAG	1 cut(s)	321
GlaI	GCGC	2 cut(s)	174, 415
GluI	GCNGC	3 cut(s)	105, 108, 176
HaeII	RGCGCY	1 cut(s)	417
HapII	CCGG	1 cut(s)	67
HhaI	GCGC	2 cut(s)	175, 416
Hin1I	GRCGYC	1 cut(s)	414
Hin6I	GCGC	2 cut(s)	173, 414
HinP1I	GCGC	2 cut(s)	173, 414
HincII	GTYRAC	2 cut(s)	16, 406
HindII	GTYRAC	2 cut(s)	16, 406
HinfI	GANTC	5 cut(s)	29, 99, 168, 356, 430
HpaII	CCGG	1 cut(s)	67
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	3 cut(s)	16, 43, 406
Hpy188I	TCNGA	1 cut(s)	63
Hpy188III	TCNNGA	2 cut(s)	26, 338
Hpy8I	GTNNAC	3 cut(s)	16, 43, 406
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	2 cut(s)	4, 110
HpyF10VI	GCNNNNNNNGC	1 cut(s)	321
HpyF3I	CTNAG	1 cut(s)	142
HpySE526I	ACGT	1 cut(s)	207
Hsp92I	GRCGYC	1 cut(s)	414
HspAI	GCGC	2 cut(s)	173, 414
KasI	GGCGCC	1 cut(s)	413
Kzo9I	GATC	1 cut(s)	343
LmnI	GCTCC	2 cut(s)	63, 151
LpnPI	CCDG	9 cut(s)	22, 80, 163, 170, 310, 323, 394, 425, 430
Lsp1109I	GCAGC	2 cut(s)	94, 162
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	1 cut(s)	345
MboI	GATC	1 cut(s)	343
MboII	GAAGA	2 cut(s)	265, 391
MflI	RGATCY	1 cut(s)	343
MluCI	AATT	2 cut(s)	233, 277
Mly113I	GGCGCC	1 cut(s)	414
MmeI	TCCRAC	1 cut(s)	428
MnlI	CCTC	8 cut(s)	33, 145, 222, 262, 334, 364, 384, 444
MseI	TTAA	2 cut(s)	225, 243
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	1 cut(s)	67
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	321
NarI	GGCGCC	1 cut(s)	414
NdeII	GATC	1 cut(s)	343
NlaIV	GGNNCC	4 cut(s)	65, 71, 345, 415
NmuCI	GTSAC	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PfeI	GAWTC	5 cut(s)	29, 99, 168, 356, 430
PflFI	GACNNNGTC	1 cut(s)	463
PkrI	GCNGC	3 cut(s)	106, 109, 177
PluTI	GGCGCC	1 cut(s)	417
PsiI	TTATAA	1 cut(s)	305
PspN4I	GGNNCC	4 cut(s)	65, 71, 345, 415
PspPI	GGNCC	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	343
PsyI	GACNNNGTC	1 cut(s)	463
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
SalI	GTCGAC	1 cut(s)	14
SaqAI	TTAA	2 cut(s)	225, 243
SatI	GCNGC	3 cut(s)	105, 108, 176
Sau3AI	GATC	1 cut(s)	343
Sau96I	GGNCC	1 cut(s)	94
SetI	ASST	7 cut(s)	10, 129, 148, 189, 210, 273, 375
SfoI	GGCGCC	1 cut(s)	415
SinI	GGWCC	1 cut(s)	94
Sse9I	AATT	2 cut(s)	233, 277
SsiI	CCGC	4 cut(s)	20, 48, 105, 193
SspDI	GGCGCC	1 cut(s)	413
SspMI	CTAG	1 cut(s)	321
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	3 cut(s)	15, 27, 359
TaqII	GACCGA	1 cut(s)	111
TasI	AATT	2 cut(s)	233, 277
TatI	WGTACW	1 cut(s)	477
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	5 cut(s)	29, 99, 168, 356, 430
Tru1I	TTAA	2 cut(s)	225, 243
Tru9I	TTAA	2 cut(s)	225, 243
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	2 cut(s)	107, 175
Tsp45I	GTSAC	1 cut(s)	259
Tth111I	GACNNNGTC	1 cut(s)	463
VpaK11BI	GGWCC	1 cut(s)	94
XmiI	GTMKAC	2 cut(s)	15, 42
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.