Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002351

Physical Location & Seq

Genomic Coordinates Reverse (-)

26230749 .. 26231603

Gene Structure 855 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG266800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGCAACAGGGAAGGTTAGGGTTTCCTACAAGCTCAAAAAGGTTAGGGTTTTACTTGAGCTCAGCTCCTACTAGCTCTCACTACAAATCAAACAGTTTCACCATAGTTCTATCTCTAATCGAGTTCACGACTTCCTCAAATCCACCGAACTCCGAACCCCAAATTAAGCTAAGCCCTTCAATTCAAACCGTTGAAAACCCCAAACTCTCTCCCTTGATTCAACAATTCTACCAACCAATACAATCTCAGGTCGACCCGCCTCTTGAATCCATCTGGGTCTACACCGCATTGACATTTCGGAGCCGAAAACTCCCAAAAGGCGACGTCTTGGACCGAATCTCCGTCACAAAGGACTTATTTCAGCTGCTCTCCTCTTGCTCAACTCCCTGCGGTTCCTCAAAGAGCGTAGCGCTGCTCGCTCCAGTAGTGCGGTTGGCACACGATGTCGTTTTGGATTTGTTTAAGAGGGAGTTGGGGTTGAAGAAAGAGAAGAAAGTGATGAAGGAGGTGAAGAATTTGGTGGGAGTGATTCTGGGGTTTATAAATGTATGTTGTTCTAGCAGTGATTCGAGTCAGGAGGAAGCTTTGATTGATTCGAGTTCGGGTTGGTCTTTTTTGGGTTTAAGTTATGTTTGGTTGAACATAGATGAGAATGTTAGGAATTTTTTACCTTTAGTGAGTGAGGAGGTGATTGGTGGGCTTAGTGAGAGAGATGGGGATGTGAGCTACTTGGTTGGAGTTGTTATTGCTGAGGTTTTTTTGTTGAGACTGTGCTTGAATTACAAAGCTGGGACTTCAGGGGAGGTGTTGGAGACAGAGTTGAGGACTTGTAGTGAAGTGGCGGGGGGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

284

Amino Acids

31.12

Weight (kDa)

5.83

Isoelectric Point (pI)

51.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11780
fragaria_vesca	FvH4_1g07060
malus_domestica	MD02G1074500.v1.1
prunus_persica	Prupe.7G213400_v2.0.a1
pyrus_communis	pycom02g05890 pycom15g18070
rosa_chinensis	RchiOBHm_Chr2g0092961 RchiOBHm_Chr4g0406051 RchiOBHm_Chr4g0425381
rosa_laevigata	RLG00000008045 RLG00000016353 RLG00000020789 RLG00000033390
rosa_multiflora	Rmu_co8270331.1_g000001 Rmu_sc0000596.1_g000010 Rmu_sc0000965.1_g000017 Rmu_sc0002862.1_g000003 Rmu_sc0002882.1_g000032 Rmu_sc0003902.1_g000018 Rmu_sc0006662.1_g000006 Rmu_sc0010963.1_g000006 Rmu_sc0012535.1_g000006
rosa_roxburghii	Rroxscaffold_2G00148670
rosa_rugosa	Rorug02G0030700
rosa_samantha	Rh1DG034900 Rh2AG076700 Rh2BG078000 Rh2CG080200 Rh2DG075300 Rh2DG566700 Rh3BG038800 Rh3CG266800 Rh3DG038000 Rh3DG262900 Rh6AG284700 Rh6BG048400 Rh6BG286100 Rh6CG287100 Rh7AG478700
rosa_wichuraiana	Rw2G006950 Rw3G003880 Rw3G021260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	542
AatII	GACGTC	1 cut(s)	327
AccI	GTMKAC	2 cut(s)	252, 279
AciI	CCGC	5 cut(s)	257, 285, 390, 430, 842
AcsI	RAATTY	2 cut(s)	514, 661
AcuI	CTGAAG	1 cut(s)	780
AcyI	GRCGYC	1 cut(s)	324
AfeI	AGCGCT	1 cut(s)	411
AgsI	TTSAA	8 cut(s)	180, 185, 194, 221, 266, 481, 640, 778
AluBI	AGCT	9 cut(s)	33, 60, 65, 75, 169, 364, 584, 726, 788
AluI	AGCT	9 cut(s)	33, 60, 65, 75, 169, 364, 584, 726, 788
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	2 cut(s)	760, 806
Aor51HI	AGCGCT	1 cut(s)	411
ApeKI	GCWGC	2 cut(s)	364, 412
ApoI	RAATTY	2 cut(s)	514, 661
AspLEI	GCGC	1 cut(s)	412
AspS9I	GGNCC	1 cut(s)	331
AsuHPI	GGTGA	3 cut(s)	91, 520, 700
AvaII	GGWCC	1 cut(s)	331
BanII	GRGCYC	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	62
BbvCI	CCTCAGC	1 cut(s)	750
BbvI	GCAGC	2 cut(s)	351, 399
BccI	CCATC	2 cut(s)	278, 707
BcoDI	GTCTC	2 cut(s)	760, 806
BfaI	CTAG	2 cut(s)	72, 558
BfoI	RGCGCY	1 cut(s)	413
BisI	GCNGC	2 cut(s)	365, 413
BlpI	GCTNAGC	2 cut(s)	61, 170
BlsI	GCNGC	2 cut(s)	366, 414
Bme18I	GGWCC	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	2 cut(s)	302, 394
BplI	GAGNNNNNCTC	2 cut(s)	49, 81
BpmI	CTGGAG	1 cut(s)	405
Bpu10I	CCTNAGC	1 cut(s)	750
Bpu1102I	GCTNAGC	2 cut(s)	61, 170
BpuEI	CTTGAG	1 cut(s)	76
BsaHI	GRCGYC	1 cut(s)	324
BsaXI	ACNNNNNCTCC	6 cut(s)	323, 353, 461, 491, 803, 833
Bse1I	ACTGG	1 cut(s)	422
BseGI	GGATG	1 cut(s)	724
BseMII	CTCAG	3 cut(s)	75, 260, 741
BseNI	ACTGG	1 cut(s)	422
BseRI	GAGGAG	2 cut(s)	361, 698
BseXI	GCAGC	2 cut(s)	351, 399
BseYI	CCCAGC	1 cut(s)	788
BsiHKAI	GWGCWC	1 cut(s)	62
BslFI	GGGAC	1 cut(s)	805
BsmAI	GTCTC	2 cut(s)	760, 806
BsmFI	GGGAC	1 cut(s)	805
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp143I	GATC	1 cut(s)	848
Bsp1720I	GCTNAGC	2 cut(s)	61, 170
BspACI	CCGC	5 cut(s)	257, 285, 390, 430, 842
BspCNI	CTCAG	3 cut(s)	74, 259, 742
BspHI	TCATGA	1 cut(s)	851
BspLI	GGNNCC	2 cut(s)	302, 394
BsrI	ACTGG	1 cut(s)	422
BssMI	GATC	1 cut(s)	848
BssNI	GRCGYC	1 cut(s)	324
Bst4CI	ACNGT	3 cut(s)	95, 190, 771
BstACI	GRCGYC	1 cut(s)	324
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	5 cut(s)	61, 170, 246, 701, 750
BstF5I	GGATG	1 cut(s)	724
BstH2I	RGCGCY	1 cut(s)	413
BstHHI	GCGC	1 cut(s)	412
BstKTI	GATC	1 cut(s)	851
BstMAI	GTCTC	2 cut(s)	760, 806
BstMBI	GATC	1 cut(s)	848
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstV1I	GCAGC	2 cut(s)	351, 399
BtsCI	GGATG	1 cut(s)	724
BtsI	GCAGTG	1 cut(s)	568
BtsIMutI	CAGTG	1 cut(s)	568
Cac8I	GCNNGC	1 cut(s)	417
CciI	TCATGA	1 cut(s)	851
CfoI	GCGC	1 cut(s)	412
Cfr13I	GGNCC	1 cut(s)	331
CviAII	CATG	1 cut(s)	852
DdeI	CTNAG	5 cut(s)	61, 170, 246, 701, 750
DpnI	GATC	1 cut(s)	850
DpnII	GATC	1 cut(s)	848
Ecl136II	GAGCTC	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	62
Eco47I	GGWCC	1 cut(s)	331
Eco47III	AGCGCT	1 cut(s)	411
Eco53kI	GAGCTC	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	780
EcoICRI	GAGCTC	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	62
FaeI	CATG	1 cut(s)	855
FaiI	YATR	6 cut(s)	104, 542, 550, 630, 644, 853
FaqI	GGGAC	1 cut(s)	805
FatI	CATG	1 cut(s)	851
FauI	CCCGC	2 cut(s)	264, 835
FblI	GTMKAC	2 cut(s)	252, 279
Fnu4HI	GCNGC	2 cut(s)	365, 413
FokI	GGATG	1 cut(s)	731
FriOI	GRGCYC	1 cut(s)	62
Fsp4HI	GCNGC	2 cut(s)	365, 413
FspBI	CTAG	2 cut(s)	72, 558
GlaI	GCGC	1 cut(s)	411
GluI	GCNGC	2 cut(s)	365, 413
GsaI	CCCAGC	1 cut(s)	792
GsuI	CTGGAG	1 cut(s)	405
HaeII	RGCGCY	1 cut(s)	413
HhaI	GCGC	1 cut(s)	412
Hin1I	GRCGYC	1 cut(s)	324
Hin1II	CATG	1 cut(s)	855
Hin6I	GCGC	1 cut(s)	410
HinP1I	GCGC	1 cut(s)	410
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HindIII	AAGCTT	1 cut(s)	582
HinfI	GANTC	7 cut(s)	217, 266, 336, 529, 566, 571, 593
HphI	GGTGA	3 cut(s)	91, 520, 700
Hpy166II	GTNNAC	3 cut(s)	126, 253, 280
Hpy188I	TCNGA	2 cut(s)	154, 300
Hpy188III	TCNNGA	4 cut(s)	127, 263, 575, 852
Hpy8I	GTNNAC	3 cut(s)	126, 253, 280
Hpy99I	CGWCG	1 cut(s)	326
HpyAV	CCTTC	3 cut(s)	6, 186, 496
HpyCH4III	ACNGT	3 cut(s)	95, 190, 771
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	5 cut(s)	61, 170, 246, 701, 750
HpySE526I	ACGT	1 cut(s)	324
Hsp92I	GRCGYC	1 cut(s)	324
Hsp92II	CATG	1 cut(s)	855
HspAI	GCGC	1 cut(s)	410
Kzo9I	GATC	1 cut(s)	848
LmnI	GCTCC	3 cut(s)	70, 300, 424
LpnPI	CCDG	8 cut(s)	233, 259, 400, 435, 518, 560, 774, 783
Lsp1109I	GCAGC	2 cut(s)	351, 399
MaeI	CTAG	2 cut(s)	72, 558
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	1 cut(s)	850
MboI	GATC	1 cut(s)	848
MboII	GAAGA	3 cut(s)	493, 502, 523
MhlI	GDGCHC	1 cut(s)	62
MluCI	AATT	6 cut(s)	162, 180, 224, 514, 661, 778
MlyI	GAGTC	1 cut(s)	580
MmeI	TCCRAC	2 cut(s)	715, 789
MseI	TTAA	3 cut(s)	165, 462, 623
MspA1I	CMGCKG	1 cut(s)	364
MwoI	GCNNNNNNNGC	1 cut(s)	416
NdeII	GATC	1 cut(s)	848
NlaIII	CATG	1 cut(s)	855
NlaIV	GGNNCC	2 cut(s)	302, 394
NmuCI	GTSAC	1 cut(s)	343
PagI	TCATGA	1 cut(s)	851
PfeI	GAWTC	6 cut(s)	217, 266, 336, 529, 566, 593
PkrI	GCNGC	2 cut(s)	366, 414
PleI	GAGTC	1 cut(s)	579
PpsI	GAGTC	1 cut(s)	579
PsiI	TTATAA	1 cut(s)	542
Psp124BI	GAGCTC	1 cut(s)	62
PspFI	CCCAGC	1 cut(s)	788
PspN4I	GGNNCC	2 cut(s)	302, 394
PspPI	GGNCC	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	364
SacI	GAGCTC	1 cut(s)	62
SalI	GTCGAC	1 cut(s)	251
SaqAI	TTAA	3 cut(s)	165, 462, 623
SatI	GCNGC	2 cut(s)	365, 413
Sau3AI	GATC	1 cut(s)	848
Sau96I	GGNCC	1 cut(s)	331
SchI	GAGTC	1 cut(s)	580
SduI	GDGCHC	1 cut(s)	62
SinI	GGWCC	1 cut(s)	331
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
Sse9I	AATT	6 cut(s)	162, 180, 224, 514, 661, 778
SsiI	CCGC	5 cut(s)	257, 285, 390, 430, 842
SspMI	CTAG	2 cut(s)	72, 558
SstI	GAGCTC	1 cut(s)	62
TaaI	ACNGT	3 cut(s)	95, 190, 771
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	4 cut(s)	120, 252, 569, 596
TaqII	GACCGA	1 cut(s)	348
TasI	AATT	6 cut(s)	162, 180, 224, 514, 661, 778
TfiI	GAWTC	6 cut(s)	217, 266, 336, 529, 566, 593
Tru1I	TTAA	3 cut(s)	165, 462, 623
Tru9I	TTAA	3 cut(s)	165, 462, 623
TscAI	CASTG	1 cut(s)	568
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	2 cut(s)	364, 412
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	1 cut(s)	515
TspGWI	ACGGA	1 cut(s)	331
TspRI	CASTG	1 cut(s)	568
VpaK11BI	GGWCC	1 cut(s)	331
XapI	RAATTY	2 cut(s)	514, 661
XmiI	GTMKAC	2 cut(s)	252, 279
XspI	CTAG	2 cut(s)	72, 558
ZraI	GACGTC	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.