RLG00000033390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002351
Physical Location & Seq
Forward (+)
26558339 .. 26559711
1373 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033390

Sequence Viewer

Length: 552 bp
ATGGTCGCGCTGCTCGTTCCAGTGGTGCAGTTGGCACACGACGTTGTTTTGGATTTGTTTAAGAGGGACTTGGGGTTGAAGAAAGTGACGAAGGAGGTGAAGAATTTGGTGGGAGTGATTATCGGGTTTATAAGTGTGTGCTATTCTAGCATGGATTTGGGTAAGGAGGATCCTTTAATTGATTCGAGTTCGGGTTGGTCTTTTTCGAGTTTAAGTTGTGTTTGGTTGAACAGATATGAGAATGTTAGGAATTTGTTACCTTTAGTGAGTGAGGAGGTGATTGATGGGCTCAGAGAGAGAGATGGGGATGTGAGTTACTTGGCTGGAGTTGTTATTGCAGAGGTTTTTTTGTTGAGACTGTGCTTGATTTGCGAAGCTGGGACTTCAGGGGAGGTGTTGAAGACAGAGTTGAGGACTTGGGTTGTCGACGGGGGCGCCTGCCTTGACGAGAATCGTCATCTGGGGAGTTGGAGGGAGATGACAAAGTCTTTGGGGTTACCAACCGGCCCGAAATATTTGGGTCCGGGTTCTAGTTGGGCTGAGAAATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

20.1

Weight (kDa)

5.11

Isoelectric Point (pI)

29.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 131
AccB1I GGYRCC 1 cut(s) 434
AccI GTMKAC 1 cut(s) 426
AccII CGCG 1 cut(s) 8
AclWI GGATC 2 cut(s) 164, 177
AcsI RAATTY 2 cut(s) 103, 250
AcuI CTGAAG 1 cut(s) 369
AcyI GRCGYC 1 cut(s) 435
AgsI TTSAA 3 cut(s) 79, 229, 400
AluBI AGCT 1 cut(s) 377
AluI AGCT 1 cut(s) 377
Alw26I GTCTC 1 cut(s) 349
AlwI GGATC 2 cut(s) 164, 177
AoxI GGCC 1 cut(s) 505
ApeKI GCWGC 1 cut(s) 10
ApoI RAATTY 2 cut(s) 103, 250
ArsI GACNNNNNNTTYG 2 cut(s) 472, 504
AspLEI GCGC 2 cut(s) 10, 437
AspS9I GGNCC 2 cut(s) 506, 521
AsuC2I CCSGG 1 cut(s) 525
AsuHPI GGTGA 2 cut(s) 109, 289
AvaII GGWCC 1 cut(s) 521
BamHI GGATCC 1 cut(s) 169
BanI GGYRCC 1 cut(s) 434
BanII GRGCYC 1 cut(s) 291
BbsI GAAGAC 1 cut(s) 407
BccI CCATC 2 cut(s) 278, 296
BcnI CCSGG 1 cut(s) 525
BcoDI GTCTC 1 cut(s) 349
BfaI CTAG 2 cut(s) 147, 531
BfoI RGCGCY 1 cut(s) 438
BisI GCNGC 1 cut(s) 11
BlsI GCNGC 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 525
Bme18I GGWCC 1 cut(s) 521
BmgT120I GGNCC 2 cut(s) 506, 521
BmiI GGNNCC 3 cut(s) 171, 436, 522
BmrFI CCNGG 1 cut(s) 525
BpiI GAAGAC 1 cut(s) 407
BpmI CTGGAG 1 cut(s) 345
BpuMI CCSGG 1 cut(s) 525
BsaHI GRCGYC 1 cut(s) 435
Bse118I RCCGGY 1 cut(s) 503
Bse1I ACTGG 1 cut(s) 20
BseGI GGATG 1 cut(s) 313
BseMII CTCAG 2 cut(s) 304, 531
BseNI ACTGG 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 287
BseYI CCCAGC 1 cut(s) 377
BsgI GTGCAG 1 cut(s) 47
Bsh1236I CGCG 1 cut(s) 8
BshFI GGCC 1 cut(s) 507
BshNI GGYRCC 1 cut(s) 434
BsiSI CCGG 2 cut(s) 504, 524
BslFI GGGAC 2 cut(s) 80, 394
BsmAI GTCTC 1 cut(s) 349
BsmFI GGGAC 2 cut(s) 80, 394
BsnI GGCC 1 cut(s) 507
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 1 cut(s) 169
BspANI GGCC 1 cut(s) 507
BspCNI CTCAG 2 cut(s) 303, 532
BspFNI CGCG 1 cut(s) 8
BspLI GGNNCC 3 cut(s) 171, 436, 522
BspPI GGATC 2 cut(s) 164, 177
BspT107I GGYRCC 1 cut(s) 434
BsrFI RCCGGY 1 cut(s) 503
BsrI ACTGG 1 cut(s) 20
BssAI RCCGGY 1 cut(s) 503
BssMI GATC 1 cut(s) 169
BssNI GRCGYC 1 cut(s) 435
Bst4CI ACNGT 1 cut(s) 360
BstACI GRCGYC 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 439
BstDEI CTNAG 2 cut(s) 290, 540
BstEII GGTNACC 1 cut(s) 495
BstF5I GGATG 1 cut(s) 313
BstFNI CGCG 1 cut(s) 8
BstH2I RGCGCY 1 cut(s) 438
BstHHI GCGC 2 cut(s) 10, 437
BstKTI GATC 1 cut(s) 172
BstMAI GTCTC 1 cut(s) 349
BstMBI GATC 1 cut(s) 169
BstMWI GCNNNNNNNGC 2 cut(s) 147, 369
BstPI GGTNACC 1 cut(s) 495
BstSCI CCNGG 1 cut(s) 523
BstUI CGCG 1 cut(s) 8
BstV2I GAAGAC 1 cut(s) 407
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BsuRI GGCC 1 cut(s) 507
BtsCI GGATG 1 cut(s) 313
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 439
CfoI GCGC 2 cut(s) 10, 437
Cfr10I RCCGGY 1 cut(s) 503
Cfr13I GGNCC 2 cut(s) 506, 521
CviAII CATG 1 cut(s) 151
CviJI RGCY 5 cut(s) 289, 323, 377, 507, 539
CviKI_1 RGCY 5 cut(s) 289, 323, 377, 507, 539
DdeI CTNAG 2 cut(s) 290, 540
DinI GGCGCC 1 cut(s) 436
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 521
Eco57I CTGAAG 1 cut(s) 369
Eco91I GGTNACC 1 cut(s) 495
EcoO65I GGTNACC 1 cut(s) 495
EcoT38I GRGCYC 1 cut(s) 291
EgeI GGCGCC 1 cut(s) 436
EheI GGCGCC 1 cut(s) 436
FaeI CATG 1 cut(s) 154
FaiI YATR 3 cut(s) 131, 152, 237
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FaqI GGGAC 2 cut(s) 80, 394
FatI CATG 1 cut(s) 150
FblI GTMKAC 1 cut(s) 426
Fnu4HI GCNGC 1 cut(s) 11
FokI GGATG 1 cut(s) 320
FriOI GRGCYC 1 cut(s) 291
Fsp4HI GCNGC 1 cut(s) 11
FspBI CTAG 2 cut(s) 147, 531
GlaI GCGC 2 cut(s) 9, 436
GluI GCNGC 1 cut(s) 11
GsaI CCCAGC 1 cut(s) 381
GsuI CTGGAG 1 cut(s) 345
HaeII RGCGCY 1 cut(s) 438
HaeIII GGCC 1 cut(s) 507
HapII CCGG 2 cut(s) 504, 524
HhaI GCGC 2 cut(s) 10, 437
Hin1I GRCGYC 1 cut(s) 435
Hin1II CATG 1 cut(s) 154
Hin6I GCGC 2 cut(s) 8, 435
HinP1I GCGC 2 cut(s) 8, 435
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HinfI GANTC 2 cut(s) 182, 451
HpaII CCGG 2 cut(s) 504, 524
HphI GGTGA 2 cut(s) 109, 289
Hpy166II GTNNAC 1 cut(s) 427
Hpy188I TCNGA 1 cut(s) 293
Hpy8I GTNNAC 1 cut(s) 427
Hpy99I CGWCG 2 cut(s) 44, 431
HpyAV CCTTC 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 360
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 2 cut(s) 28, 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 147, 369
HpyF3I CTNAG 2 cut(s) 290, 540
HpySE526I ACGT 1 cut(s) 42
Hsp92I GRCGYC 1 cut(s) 435
Hsp92II CATG 1 cut(s) 154
HspAI GCGC 2 cut(s) 8, 435
KasI GGCGCC 1 cut(s) 434
Kzo9I GATC 1 cut(s) 169
LpnPI CCDG 8 cut(s) 33, 309, 363, 372, 446, 451, 517, 537
MaeI CTAG 2 cut(s) 147, 531
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 4 cut(s) 85, 255, 314, 495
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 3 cut(s) 91, 112, 412
MflI RGATCY 1 cut(s) 169
MhlI GDGCHC 1 cut(s) 291
MluCI AATT 4 cut(s) 103, 177, 250, 545
Mly113I GGCGCC 1 cut(s) 435
MmeI TCCRAC 1 cut(s) 449
MnlI CCTC 9 cut(s) 57, 88, 160, 265, 268, 334, 385, 405, 465
MseI TTAA 3 cut(s) 60, 176, 212
MspI CCGG 2 cut(s) 504, 524
MspR9I CCNGG 1 cut(s) 525
MvnI CGCG 1 cut(s) 8
MwoI GCNNNNNNNGC 2 cut(s) 147, 369
NarI GGCGCC 1 cut(s) 435
NciI CCSGG 1 cut(s) 525
NdeII GATC 1 cut(s) 169
NlaIII CATG 1 cut(s) 154
NlaIV GGNNCC 3 cut(s) 171, 436, 522
NmuCI GTSAC 1 cut(s) 85
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PfeI GAWTC 2 cut(s) 182, 451
PflFI GACNNNGTC 1 cut(s) 484
PkrI GCNGC 1 cut(s) 12
PluTI GGCGCC 1 cut(s) 438
PsiI TTATAA 1 cut(s) 131
PspEI GGTNACC 1 cut(s) 495
PspFI CCCAGC 1 cut(s) 377
PspN4I GGNNCC 3 cut(s) 171, 436, 522
PspPI GGNCC 2 cut(s) 506, 521
PsuI RGATCY 1 cut(s) 169
PsyI GACNNNGTC 1 cut(s) 484
SalI GTCGAC 1 cut(s) 425
SaqAI TTAA 3 cut(s) 60, 176, 212
SatI GCNGC 1 cut(s) 11
Sau3AI GATC 1 cut(s) 169
Sau96I GGNCC 2 cut(s) 506, 521
ScrFI CCNGG 1 cut(s) 525
SduI GDGCHC 1 cut(s) 291
SetI ASST 7 cut(s) 45, 99, 262, 279, 345, 379, 396
SfoI GGCGCC 1 cut(s) 436
SinI GGWCC 1 cut(s) 521
Sse9I AATT 4 cut(s) 103, 177, 250, 545
SspDI GGCGCC 1 cut(s) 434
SspI AATATT 1 cut(s) 515
SspMI CTAG 2 cut(s) 147, 531
StyD4I CCNGG 1 cut(s) 523
TaaI ACNGT 1 cut(s) 360
TaiI ACGT 1 cut(s) 45
TaqI TCGA 3 cut(s) 185, 206, 426
TasI AATT 4 cut(s) 103, 177, 250, 545
TfiI GAWTC 2 cut(s) 182, 451
Tru1I TTAA 3 cut(s) 60, 176, 212
Tru9I TTAA 3 cut(s) 60, 176, 212
TscAI CASTG 1 cut(s) 27
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 1 cut(s) 10
Tsp45I GTSAC 1 cut(s) 85
TspRI CASTG 1 cut(s) 27
Tth111I GACNNNGTC 1 cut(s) 484
VpaK11BI GGWCC 1 cut(s) 521
XapI RAATTY 2 cut(s) 103, 250
XmiI GTMKAC 1 cut(s) 426
XspI CTAG 2 cut(s) 147, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.