Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002351

Physical Location & Seq

Genomic Coordinates Forward (+)

2519395 .. 2520165

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG038000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGTTCCATCTCTAATTGAGTTCACGACTTCCTCAAATCCACCAAACTCCGAACCCCAAATTAAGCTAAGCCCATTAATTCAGACCGTTGTAGATGAAATCCACAAGGAAAACCCCAAACTCTCTCCCTTGATTCAACAATTCTACCAACCAATGCAATCTCGGGTCGACCCACCTCTCGAATCCATCTGGGTCTACACCACATTGACATTTCGGAGCCGGAACCACCCAAAAGGCGACATCTTGGACCGAATCACCGCCGCAAAGGACTTGTTTCAACTGCTCTCCTCTTGCTCAACACCCTGCGGTTCCTCAAAGAGCGTAGCGCTGCTCGCTCCGGTGGTGCGGTTGGAACACAATGTCGTTTTGGATTTGTTTGAGAGGGAGTTGGGGTTGAAGAAAGAGAAGAAAGTGATGAAGGAGGTGAAGAATTTGGTGGGATTGATTATGGGGTTTATAAATGTGTGCTGTTCTAGCAGGGATTCAAGTCAGGAGGAACCTTTGATTGATTTGAGTTCAGGTTGGTCTTTTTCGGGTTTAAGTTGTCTTTGTTTGAACATAGATGAGTATGTTAGGAATTTGTTACCTTTAGTGAGTGAGGAGGTGATTGGTGGGCTTAGTGAGAGAGATGGGGATGTGAGCTACTTGGTTGGAGTTGTTATTGCAGAGGTTTTTTTGTTGAGACTGTGCTTGAATTGCAAAGCTGGGACTTCAGGGGAGGTGTTGGAGATAGAGTTGAGGACTTGTAGTGAAGTGGCGGGGGGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

256

Amino Acids

28.2

Weight (kDa)

5.04

Isoelectric Point (pI)

53.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11780
fragaria_vesca	FvH4_1g07060
malus_domestica	MD02G1074500.v1.1
prunus_persica	Prupe.7G213400_v2.0.a1
pyrus_communis	pycom02g05890 pycom15g18070
rosa_chinensis	RchiOBHm_Chr2g0092961 RchiOBHm_Chr4g0406051 RchiOBHm_Chr4g0425381
rosa_laevigata	RLG00000008045 RLG00000016353 RLG00000020789 RLG00000033390
rosa_multiflora	Rmu_co8270331.1_g000001 Rmu_sc0000596.1_g000010 Rmu_sc0000965.1_g000017 Rmu_sc0002862.1_g000003 Rmu_sc0002882.1_g000032 Rmu_sc0003902.1_g000018 Rmu_sc0006662.1_g000006 Rmu_sc0010963.1_g000006 Rmu_sc0012535.1_g000006
rosa_roxburghii	Rroxscaffold_2G00148670
rosa_rugosa	Rorug02G0030700
rosa_samantha	Rh1DG034900 Rh2AG076700 Rh2BG078000 Rh2CG080200 Rh2DG075300 Rh2DG566700 Rh3BG038800 Rh3CG266800 Rh3DG038000 Rh3DG262900 Rh6AG284700 Rh6BG048400 Rh6BG286100 Rh6CG287100 Rh7AG478700
rosa_wichuraiana	Rw2G006950 Rw3G003880 Rw3G021260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	458
AccI	GTMKAC	2 cut(s)	168, 195
AciI	CCGC	5 cut(s)	258, 261, 306, 346, 758
AcsI	RAATTY	2 cut(s)	430, 577
AcuI	CTGAAG	1 cut(s)	696
AfeI	AGCGCT	1 cut(s)	327
AgsI	TTSAA	6 cut(s)	137, 278, 397, 486, 556, 694
AluBI	AGCT	3 cut(s)	67, 642, 704
AluI	AGCT	3 cut(s)	67, 642, 704
Alw26I	GTCTC	1 cut(s)	676
Ama87I	CYCGRG	1 cut(s)	162
Aor51HI	AGCGCT	1 cut(s)	327
ApeKI	GCWGC	1 cut(s)	328
ApoI	RAATTY	2 cut(s)	430, 577
AseI	ATTAAT	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	328
AspS9I	GGNCC	1 cut(s)	247
AsuHPI	GGTGA	3 cut(s)	247, 436, 616
AvaI	CYCGRG	1 cut(s)	162
AvaII	GGWCC	1 cut(s)	247
BbvI	GCAGC	1 cut(s)	315
BccI	CCATC	3 cut(s)	16, 194, 623
BcoDI	GTCTC	1 cut(s)	676
BfaI	CTAG	1 cut(s)	474
BfoI	RGCGCY	1 cut(s)	329
BisI	GCNGC	2 cut(s)	261, 329
BlpI	GCTNAGC	1 cut(s)	68
BlsI	GCNGC	2 cut(s)	262, 330
Bme18I	GGWCC	1 cut(s)	247
BmeT110I	CYCGRG	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	5 cut(s)	6, 218, 224, 310, 498
Bpu1102I	GCTNAGC	1 cut(s)	68
BsaWI	WCCGGW	1 cut(s)	337
BsaXI	ACNNNNNCTCC	4 cut(s)	377, 407, 719, 749
BseGI	GGATG	1 cut(s)	640
BseRI	GAGGAG	2 cut(s)	277, 614
BseXI	GCAGC	1 cut(s)	315
BseYI	CCCAGC	1 cut(s)	704
BsiHKCI	CYCGRG	1 cut(s)	162
BsiSI	CCGG	2 cut(s)	220, 338
BslFI	GGGAC	1 cut(s)	721
BsmAI	GTCTC	1 cut(s)	676
BsmFI	GGGAC	1 cut(s)	721
BsoBI	CYCGRG	1 cut(s)	162
Bsp143I	GATC	1 cut(s)	764
Bsp1720I	GCTNAGC	1 cut(s)	68
BspACI	CCGC	5 cut(s)	258, 261, 306, 346, 758
BspHI	TCATGA	1 cut(s)	767
BspLI	GGNNCC	5 cut(s)	6, 218, 224, 310, 498
BssMI	GATC	1 cut(s)	764
Bst4CI	ACNGT	2 cut(s)	88, 687
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	2 cut(s)	68, 617
BstF5I	GGATG	1 cut(s)	640
BstH2I	RGCGCY	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	1 cut(s)	767
BstMAI	GTCTC	1 cut(s)	676
BstMBI	GATC	1 cut(s)	764
BstMWI	GCNNNNNNNGC	3 cut(s)	332, 474, 696
BstV1I	GCAGC	1 cut(s)	315
BtsCI	GGATG	1 cut(s)	640
Cac8I	GCNNGC	1 cut(s)	333
CciI	TCATGA	1 cut(s)	767
CfoI	GCGC	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	247
CviAII	CATG	1 cut(s)	768
CviJI	RGCY	6 cut(s)	67, 72, 219, 616, 642, 704
CviKI_1	RGCY	6 cut(s)	67, 72, 219, 616, 642, 704
DdeI	CTNAG	2 cut(s)	68, 617
DpnI	GATC	1 cut(s)	766
DpnII	GATC	1 cut(s)	764
Eco47I	GGWCC	1 cut(s)	247
Eco47III	AGCGCT	1 cut(s)	327
Eco57I	CTGAAG	1 cut(s)	696
Eco88I	CYCGRG	1 cut(s)	162
FaeI	CATG	1 cut(s)	771
FaiI	YATR	5 cut(s)	449, 458, 560, 570, 769
FaqI	GGGAC	1 cut(s)	721
FatI	CATG	1 cut(s)	767
FauI	CCCGC	1 cut(s)	751
FblI	GTMKAC	2 cut(s)	168, 195
Fnu4HI	GCNGC	2 cut(s)	261, 329
FokI	GGATG	1 cut(s)	647
Fsp4HI	GCNGC	2 cut(s)	261, 329
FspBI	CTAG	1 cut(s)	474
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	2 cut(s)	261, 329
GsaI	CCCAGC	1 cut(s)	708
HaeII	RGCGCY	1 cut(s)	329
HapII	CCGG	2 cut(s)	220, 338
HhaI	GCGC	1 cut(s)	328
Hin1II	CATG	1 cut(s)	771
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	4 cut(s)	133, 182, 252, 482
HpaII	CCGG	2 cut(s)	220, 338
HphI	GGTGA	3 cut(s)	247, 436, 616
Hpy166II	GTNNAC	3 cut(s)	24, 169, 196
Hpy188I	TCNGA	3 cut(s)	52, 84, 216
Hpy188III	TCNNGA	4 cut(s)	25, 179, 491, 768
Hpy8I	GTNNAC	3 cut(s)	24, 169, 196
HpyAV	CCTTC	1 cut(s)	412
HpyCH4III	ACNGT	2 cut(s)	88, 687
HpyCH4V	TGCA	3 cut(s)	157, 665, 699
HpyF10VI	GCNNNNNNNGC	3 cut(s)	332, 474, 696
HpyF3I	CTNAG	2 cut(s)	68, 617
Hsp92II	CATG	1 cut(s)	771
HspAI	GCGC	1 cut(s)	326
Kzo9I	GATC	1 cut(s)	764
LmnI	GCTCC	2 cut(s)	216, 340
LpnPI	CCDG	9 cut(s)	175, 233, 316, 351, 463, 476, 504, 690, 699
Lsp1109I	GCAGC	1 cut(s)	315
MaeI	CTAG	1 cut(s)	474
MaeIII	GTNAC	1 cut(s)	582
MalI	GATC	1 cut(s)	766
MboI	GATC	1 cut(s)	764
MboII	GAAGA	3 cut(s)	409, 418, 439
MluCI	AATT	7 cut(s)	15, 60, 78, 140, 430, 577, 694
MmeI	TCCRAC	3 cut(s)	330, 631, 705
MseI	TTAA	3 cut(s)	63, 77, 539
MspI	CCGG	2 cut(s)	220, 338
MwoI	GCNNNNNNNGC	3 cut(s)	332, 474, 696
NdeII	GATC	1 cut(s)	764
NlaIII	CATG	1 cut(s)	771
NlaIV	GGNNCC	5 cut(s)	6, 218, 224, 310, 498
PagI	TCATGA	1 cut(s)	767
PfeI	GAWTC	4 cut(s)	133, 182, 252, 482
PkrI	GCNGC	2 cut(s)	262, 330
PshBI	ATTAAT	1 cut(s)	77
PsiI	TTATAA	1 cut(s)	458
PspFI	CCCAGC	1 cut(s)	704
PspN4I	GGNNCC	5 cut(s)	6, 218, 224, 310, 498
PspPI	GGNCC	1 cut(s)	247
SalI	GTCGAC	1 cut(s)	167
SaqAI	TTAA	3 cut(s)	63, 77, 539
SatI	GCNGC	2 cut(s)	261, 329
Sau3AI	GATC	1 cut(s)	764
Sau96I	GGNCC	1 cut(s)	247
SinI	GGWCC	1 cut(s)	247
Sse9I	AATT	7 cut(s)	15, 60, 78, 140, 430, 577, 694
SsiI	CCGC	5 cut(s)	258, 261, 306, 346, 758
SspMI	CTAG	1 cut(s)	474
TaaI	ACNGT	2 cut(s)	88, 687
TaqI	TCGA	2 cut(s)	168, 180
TaqII	GACCGA	1 cut(s)	264
TasI	AATT	7 cut(s)	15, 60, 78, 140, 430, 577, 694
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	4 cut(s)	133, 182, 252, 482
Tru1I	TTAA	3 cut(s)	63, 77, 539
Tru9I	TTAA	3 cut(s)	63, 77, 539
TseI	GCWGC	1 cut(s)	328
TspDTI	ATGAA	2 cut(s)	111, 431
VpaK11BI	GGWCC	1 cut(s)	247
VspI	ATTAAT	1 cut(s)	77
XapI	RAATTY	2 cut(s)	430, 577
XmiI	GTMKAC	2 cut(s)	168, 195
XspI	CTAG	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.