Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002351

Physical Location & Seq

Genomic Coordinates Forward (+)

68721198 .. 68722608

Gene Structure 1411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020789

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGCAATCTCGGGTCGGCCCGCCTCTCGAATCCATATGGGTCTACACCACATTGACATTTCGGAGTCGGAACCACCCAAAAGGCGACATCTTGGACCGACTTGCCGCCGCAAAGGACTTGTTTCAGCTGCTCTCCTCTTGCTCAGCTGCCTGCGGTTCCTCAAAAAGCATCGCGTTGCTCGCTCCGGTGGTGCGGTTGGCACACTACGTCATTTTGGATTTGTTTAAGAGGGAGTTGGGGTTGAAGAAAGAGAAGAAAGTGATGAAGGAGGTGAAGAATTTGGTGGGAGTGATTCTGGGGTTTATAAATGTGTGCTGTTCTAGCAGGGATTCCGGTCAGGAGGAACCTTTGATTGATTCGAGTTCAGGTTGGTCTTTTTTGGGTTTAAATTGTGTTTGTTTGAACAGAGATGAGAATGTTAGGAATTTGTTACCTTTAGTGAGTGAGGAGGTGATTGGTGGGCTTAGTGAGATAGATGGGGATGTGAGCTACTTGGCTGGAGTTGTTACTGCAGAGGTTTTTTTGTTGAGACTGTGCTTGAATTGCAAAGCTGGGACTTCAGGGGAGAGTTCTGAAGACGAGGGAGTCGCGGCGGCCAGGGGAGGCGCGGGGAAAGGGAGAGAAGAGAACGGGACTGGCGGCGTCGGAGGAGTGAAGTGGCGGGGGGATCATGACGGGAGAGAGAGAGTTGCCGAAGGGGGAAATGTCGGAGACGGGAAGGGAGGAGTCGATGGCTCCGAGGCGGCGAAGAACCCGACTTGGCGGACCTTCGGAGATCAGTCTCACAAGACCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

266

Amino Acids

28.17

Weight (kDa)

5.9

Isoelectric Point (pI)

41.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11780
fragaria_vesca	FvH4_1g07060
malus_domestica	MD02G1074500.v1.1
prunus_persica	Prupe.7G213400_v2.0.a1
pyrus_communis	pycom02g05890 pycom15g18070
rosa_chinensis	RchiOBHm_Chr2g0092961 RchiOBHm_Chr4g0406051 RchiOBHm_Chr4g0425381
rosa_laevigata	RLG00000008045 RLG00000016353 RLG00000020789 RLG00000033390
rosa_multiflora	Rmu_co8270331.1_g000001 Rmu_sc0000596.1_g000010 Rmu_sc0000965.1_g000017 Rmu_sc0002862.1_g000003 Rmu_sc0002882.1_g000032 Rmu_sc0003902.1_g000018 Rmu_sc0006662.1_g000006 Rmu_sc0010963.1_g000006 Rmu_sc0012535.1_g000006
rosa_roxburghii	Rroxscaffold_2G00148670
rosa_rugosa	Rorug02G0030700
rosa_samantha	Rh1DG034900 Rh2AG076700 Rh2BG078000 Rh2CG080200 Rh2DG075300 Rh2DG566700 Rh3BG038800 Rh3CG266800 Rh3DG038000 Rh3DG262900 Rh6AG284700 Rh6BG048400 Rh6BG286100 Rh6CG287100 Rh7AG478700
rosa_wichuraiana	Rw2G006950 Rw3G003880 Rw3G021260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	305
AasI	GACNNNNNNGTC	1 cut(s)	584
AccI	GTMKAC	1 cut(s)	42
AccII	CGCG	3 cut(s)	173, 590, 608
AclWI	GGATC	1 cut(s)	675
AcoI	YGGCCR	1 cut(s)	594
AcsI	RAATTY	2 cut(s)	277, 424
AcuI	CTGAAG	2 cut(s)	543, 594
AcyI	GRCGYC	1 cut(s)	642
AgsI	TTSAA	3 cut(s)	244, 403, 541
AjnI	CCWGG	1 cut(s)	596
AluBI	AGCT	4 cut(s)	127, 146, 489, 551
AluI	AGCT	4 cut(s)	127, 146, 489, 551
Alw26I	GTCTC	3 cut(s)	523, 705, 786
AlwI	GGATC	1 cut(s)	675
Ama87I	CYCGRG	1 cut(s)	9
AoxI	GGCC	2 cut(s)	16, 594
ApeKI	GCWGC	2 cut(s)	127, 146
ApoI	RAATTY	2 cut(s)	277, 424
AspLEI	GCGC	1 cut(s)	608
AspS9I	GGNCC	3 cut(s)	17, 94, 765
AsuHPI	GGTGA	2 cut(s)	283, 463
AvaI	CYCGRG	1 cut(s)	9
AvaII	GGWCC	2 cut(s)	94, 765
BbsI	GAAGAC	1 cut(s)	582
BbvI	GCAGC	2 cut(s)	114, 133
BccI	CCATC	2 cut(s)	470, 725
BciT130I	CCWGG	1 cut(s)	598
BcoDI	GTCTC	3 cut(s)	523, 705, 786
BfaI	CTAG	1 cut(s)	321
BfmI	CTRYAG	1 cut(s)	510
BisI	GCNGC	8 cut(s)	105, 108, 128, 147, 591, 594, 640, 744
BlpI	GCTNAGC	1 cut(s)	142
BlsI	GCNGC	8 cut(s)	106, 109, 129, 148, 592, 595, 641, 745
Bme1390I	CCNGG	1 cut(s)	598
Bme18I	GGWCC	2 cut(s)	94, 765
BmeT110I	CYCGRG	1 cut(s)	9
BmgT120I	GGNCC	3 cut(s)	17, 94, 765
BmiI	GGNNCC	4 cut(s)	71, 157, 345, 736
BmrFI	CCNGG	1 cut(s)	598
BmsI	GCATC	1 cut(s)	177
BpiI	GAAGAC	1 cut(s)	582
BpmI	CTGGAG	1 cut(s)	519
Bpu1102I	GCTNAGC	1 cut(s)	142
BsaHI	GRCGYC	1 cut(s)	642
BsaJI	CCNNGG	2 cut(s)	597, 738
BsaWI	WCCGGW	2 cut(s)	184, 332
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bse1I	ACTGG	1 cut(s)	640
BseBI	CCWGG	1 cut(s)	598
BseDI	CCNNGG	2 cut(s)	597, 738
BseGI	GGATG	1 cut(s)	487
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	640
BseRI	GAGGAG	4 cut(s)	124, 461, 663, 738
BseXI	GCAGC	2 cut(s)	114, 133
BseYI	CCCAGC	1 cut(s)	551
Bsh1236I	CGCG	3 cut(s)	173, 590, 608
BshFI	GGCC	2 cut(s)	18, 596
BsiHKCI	CYCGRG	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	185, 333
BslFI	GGGAC	2 cut(s)	568, 646
BsmAI	GTCTC	3 cut(s)	523, 705, 786
BsmBI	CGTCTC	1 cut(s)	705
BsmFI	GGGAC	2 cut(s)	568, 646
BsnI	GGCC	2 cut(s)	18, 596
BsoBI	CYCGRG	1 cut(s)	9
Bsp143I	GATC	2 cut(s)	667, 775
Bsp1720I	GCTNAGC	1 cut(s)	142
BspANI	GGCC	2 cut(s)	18, 596
BspCNI	CTCAG	1 cut(s)	155
BspFNI	CGCG	3 cut(s)	173, 590, 608
BspHI	TCATGA	1 cut(s)	670
BspLI	GGNNCC	4 cut(s)	71, 157, 345, 736
BspMAI	CTGCAG	1 cut(s)	514
BspPI	GGATC	1 cut(s)	675
BsrI	ACTGG	1 cut(s)	640
BssECI	CCNNGG	2 cut(s)	597, 738
BssMI	GATC	2 cut(s)	667, 775
BssNI	GRCGYC	1 cut(s)	642
Bst2UI	CCWGG	1 cut(s)	598
Bst4CI	ACNGT	1 cut(s)	534
Bst6I	CTCTTC	1 cut(s)	618
BstACI	GRCGYC	1 cut(s)	642
BstC8I	GCNNGC	3 cut(s)	20, 151, 180
BstDEI	CTNAG	2 cut(s)	142, 464
BstF5I	GGATG	1 cut(s)	487
BstFNI	CGCG	3 cut(s)	173, 590, 608
BstHHI	GCGC	1 cut(s)	608
BstKTI	GATC	2 cut(s)	670, 778
BstMAI	GTCTC	3 cut(s)	523, 705, 786
BstMBI	GATC	2 cut(s)	667, 775
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 321, 543
BstNI	CCWGG	1 cut(s)	598
BstSCI	CCNGG	1 cut(s)	596
BstSFI	CTRYAG	1 cut(s)	510
BstUI	CGCG	3 cut(s)	173, 590, 608
BstV1I	GCAGC	2 cut(s)	114, 133
BstV2I	GAAGAC	1 cut(s)	582
BsuRI	GGCC	2 cut(s)	18, 596
BtgZI	GCGATG	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	487
Cac8I	GCNNGC	3 cut(s)	20, 151, 180
CciI	TCATGA	1 cut(s)	670
CfoI	GCGC	1 cut(s)	608
Cfr13I	GGNCC	3 cut(s)	17, 94, 765
CseI	GACGC	1 cut(s)	631
CviAII	CATG	1 cut(s)	671
CviJI	RGCY	9 cut(s)	18, 127, 146, 463, 489, 497, 551, 596, 735
CviKI_1	RGCY	9 cut(s)	18, 127, 146, 463, 489, 497, 551, 596, 735
DdeI	CTNAG	2 cut(s)	142, 464
DpnI	GATC	2 cut(s)	669, 777
DpnII	GATC	2 cut(s)	667, 775
DraI	TTTAAA	1 cut(s)	387
DrdI	GACNNNNNNGTC	1 cut(s)	584
DseDI	GACNNNNNNGTC	1 cut(s)	584
EaeI	YGGCCR	1 cut(s)	594
Eam1104I	CTCTTC	1 cut(s)	618
EarI	CTCTTC	1 cut(s)	618
EciI	GGCGGA	1 cut(s)	778
Eco47I	GGWCC	2 cut(s)	94, 765
Eco57I	CTGAAG	2 cut(s)	543, 594
Eco88I	CYCGRG	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	596
Esp3I	CGTCTC	1 cut(s)	705
FaeI	CATG	1 cut(s)	674
FaiI	YATR	4 cut(s)	35, 37, 305, 672
FaqI	GGGAC	2 cut(s)	568, 646
FatI	CATG	1 cut(s)	670
FauI	CCCGC	3 cut(s)	27, 601, 654
FauNDI	CATATG	1 cut(s)	35
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	8 cut(s)	105, 108, 128, 147, 591, 594, 640, 744
FokI	GGATG	1 cut(s)	494
Fsp4HI	GCNGC	8 cut(s)	105, 108, 128, 147, 591, 594, 640, 744
FspBI	CTAG	1 cut(s)	321
GlaI	GCGC	1 cut(s)	607
GluI	GCNGC	8 cut(s)	105, 108, 128, 147, 591, 594, 640, 744
GsaI	CCCAGC	1 cut(s)	555
GsuI	CTGGAG	1 cut(s)	519
HaeIII	GGCC	2 cut(s)	18, 596
HapII	CCGG	2 cut(s)	185, 333
HgaI	GACGC	1 cut(s)	631
HhaI	GCGC	1 cut(s)	608
Hin1I	GRCGYC	1 cut(s)	642
Hin1II	CATG	1 cut(s)	674
Hin6I	GCGC	1 cut(s)	606
HinP1I	GCGC	1 cut(s)	606
HinfI	GANTC	7 cut(s)	29, 64, 292, 329, 356, 585, 726
HpaII	CCGG	2 cut(s)	185, 333
HphI	GGTGA	2 cut(s)	283, 463
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	7 cut(s)	63, 69, 574, 647, 710, 739, 773
Hpy188III	TCNNGA	3 cut(s)	26, 338, 671
Hpy8I	GTNNAC	1 cut(s)	43
Hpy99I	CGWCG	1 cut(s)	647
HpyAV	CCTTC	4 cut(s)	259, 689, 712, 778
HpyCH4III	ACNGT	1 cut(s)	534
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	3 cut(s)	4, 512, 546
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 321, 543
HpyF3I	CTNAG	2 cut(s)	142, 464
HpySE526I	ACGT	1 cut(s)	207
Hsp92I	GRCGYC	1 cut(s)	642
Hsp92II	CATG	1 cut(s)	674
HspAI	GCGC	1 cut(s)	606
Kzo9I	GATC	2 cut(s)	667, 775
LmnI	GCTCC	2 cut(s)	187, 740
Lsp1109I	GCAGC	2 cut(s)	114, 133
LweI	GCATC	1 cut(s)	177
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	2 cut(s)	429, 505
MalI	GATC	2 cut(s)	669, 777
MboI	GATC	2 cut(s)	667, 775
MboII	GAAGA	6 cut(s)	256, 265, 286, 587, 635, 760
MluCI	AATT	4 cut(s)	277, 388, 424, 541
MlyI	GAGTC	3 cut(s)	73, 594, 735
MmeI	TCCRAC	3 cut(s)	47, 625, 688
MseI	TTAA	2 cut(s)	225, 386
MspA1I	CMGCKG	2 cut(s)	127, 146
MspI	CCGG	2 cut(s)	185, 333
MspR9I	CCNGG	1 cut(s)	598
MvaI	CCWGG	1 cut(s)	598
MvnI	CGCG	3 cut(s)	173, 590, 608
MwoI	GCNNNNNNNGC	3 cut(s)	179, 321, 543
NdeI	CATATG	1 cut(s)	35
NdeII	GATC	2 cut(s)	667, 775
NlaIII	CATG	1 cut(s)	674
NlaIV	GGNNCC	4 cut(s)	71, 157, 345, 736
PagI	TCATGA	1 cut(s)	670
PcsI	WCGNNNNNNNCGW	1 cut(s)	735
PfeI	GAWTC	4 cut(s)	29, 292, 329, 356
PkrI	GCNGC	8 cut(s)	106, 109, 129, 148, 592, 595, 641, 745
PleI	GAGTC	3 cut(s)	72, 593, 734
PpsI	GAGTC	3 cut(s)	72, 593, 734
PsiI	TTATAA	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	596
PspFI	CCCAGC	1 cut(s)	551
PspGI	CCWGG	1 cut(s)	596
PspN4I	GGNNCC	4 cut(s)	71, 157, 345, 736
PspPI	GGNCC	3 cut(s)	17, 94, 765
PstI	CTGCAG	1 cut(s)	514
PvuII	CAGCTG	2 cut(s)	127, 146
SaqAI	TTAA	2 cut(s)	225, 386
SatI	GCNGC	8 cut(s)	105, 108, 128, 147, 591, 594, 640, 744
Sau3AI	GATC	2 cut(s)	667, 775
Sau96I	GGNCC	3 cut(s)	17, 94, 765
SchI	GAGTC	3 cut(s)	73, 594, 735
ScrFI	CCNGG	1 cut(s)	598
SfaNI	GCATC	1 cut(s)	177
SfcI	CTRYAG	1 cut(s)	510
SinI	GGWCC	2 cut(s)	94, 765
Sse9I	AATT	4 cut(s)	277, 388, 424, 541
SspMI	CTAG	1 cut(s)	321
StyD4I	CCNGG	1 cut(s)	596
TaaI	ACNGT	1 cut(s)	534
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	3 cut(s)	27, 359, 729
TaqII	GACCGA	1 cut(s)	111
TasI	AATT	4 cut(s)	277, 388, 424, 541
TauI	GCSGC	6 cut(s)	107, 110, 593, 596, 642, 746
TfiI	GAWTC	4 cut(s)	29, 292, 329, 356
Tru1I	TTAA	2 cut(s)	225, 386
Tru9I	TTAA	2 cut(s)	225, 386
TseI	GCWGC	2 cut(s)	127, 146
TspDTI	ATGAA	1 cut(s)	278
VpaK11BI	GGWCC	2 cut(s)	94, 765
XapI	RAATTY	2 cut(s)	277, 424
XmiI	GTMKAC	1 cut(s)	42
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.